Rh5BG334000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0017632
Physical Location & Seq
Reverse (-)
46557464 .. 46559370
1907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG334000.1

Sequence Viewer

Length: 411 bp
ATGACCCGGAAAGCTCTGCTGGAATCGCCACCCACAATGAAGCGGCGCGTGGGGGAGGTGGCGGGAGGGGCGGCGGCCGAGTGCGCGGCGGTGTGCTGCTGCTGCCCCTGCAGCATGATGAACCTGCTCGTCTTGGCCTTCTACAAGCTCCCTCGGGGCCTCTGCAGGAAGGCTTCGGCCAAGATCAAGAAGAAGCGCCGCTGCAAGAAGGGCCTGTTGCCCCGCCCCAGGCCCACTGGCGACGGCGACTTTAAGACGACGGTCAGCGGCGGCGTGCACGATGATGATTGTGACAAGAAGAAGAACGACGACGCGGAATCCGATGGGGCTGCCTTCGAGAAGGAGATGTGGGACCGGTTTTACGGCAACGGTTTTTGGAGGAGCGCCTCGTCTAACAACAAAGAAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.96

Weight (kDa)

9.3

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017632)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g26780
malus_domestica MD03G1160300.v1.1 MD15G1108700.v1.1
prunus_persica Prupe.6G148600_v2.0.a1
pyrus_communis pycom03g11280 pycom08g10970 pycom15g09930
rosa_chinensis RchiOBHm_Chr5g0049201
rosa_rugosa Rorug05G0245700
rosa_samantha Rh5BG334000 Rh5DG346100
rosa_wichuraiana Rw5G030560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 132
AccII CGCG 3 cut(s) 48, 86, 314
AcoI YGGCCR 2 cut(s) 75, 177
AfiI CCNNNNNNNGG 1 cut(s) 228
AgeI ACCGGT 1 cut(s) 354
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 2 cut(s) 14, 148
AluI AGCT 2 cut(s) 14, 148
Alw21I GWGCWC 1 cut(s) 279
Alw44I GTGCAC 1 cut(s) 275
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 6 cut(s) 75, 135, 157, 177, 211, 230
ApaLI GTGCAC 1 cut(s) 275
ApeKI GCWGC 6 cut(s) 96, 99, 102, 111, 201, 329
AsiGI ACCGGT 1 cut(s) 354
AspLEI GCGC 4 cut(s) 48, 86, 198, 386
AspS9I GGNCC 4 cut(s) 157, 211, 231, 352
AsuC2I CCSGG 1 cut(s) 7
AvaI CYCGRG 1 cut(s) 153
AvaII GGWCC 1 cut(s) 352
BaeGI GKGCMC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 6 cut(s) 83, 86, 89, 123, 188, 316
BccI CCATC 1 cut(s) 317
BceAI ACGGC 2 cut(s) 259, 379
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BciT130I CCWGG 1 cut(s) 229
BcnI CCSGG 1 cut(s) 7
BfmI CTRYAG 2 cut(s) 109, 163
BfoI RGCGCY 2 cut(s) 199, 387
BfuAI ACCTGC 1 cut(s) 132
Bme1390I CCNGG 2 cut(s) 7, 229
Bme18I GGWCC 1 cut(s) 352
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 4 cut(s) 157, 211, 231, 352
BmiI GGNNCC 2 cut(s) 158, 353
BmrFI CCNGG 2 cut(s) 7, 229
BoxI GACNNNNGTC 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 7
BsaJI CCNNGG 2 cut(s) 152, 227
BsaWI WCCGGW 1 cut(s) 354
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse118I RCCGGY 1 cut(s) 354
Bse1I ACTGG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 152, 227
BseLI CCNNNNNNNGG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 394
BseSI GKGCMC 1 cut(s) 279
BseX3I CGGCCG 1 cut(s) 75
BseXI GCAGC 6 cut(s) 83, 86, 89, 123, 188, 316
Bsh1236I CGCG 3 cut(s) 48, 86, 314
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 6 cut(s) 77, 137, 159, 179, 213, 232
BshTI ACCGGT 1 cut(s) 354
BsiEI CGRYCG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 2 cut(s) 7, 355
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 6 cut(s) 77, 137, 159, 179, 213, 232
BsoBI CYCGRG 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 1 cut(s) 183
BspANI GGCC 6 cut(s) 77, 137, 159, 179, 213, 232
BspFNI CGCG 3 cut(s) 48, 86, 314
BspLI GGNNCC 2 cut(s) 158, 353
BspMAI CTGCAG 2 cut(s) 113, 167
BspMI ACCTGC 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 354
BsrI ACTGG 1 cut(s) 241
BssAI RCCGGY 1 cut(s) 354
BssECI CCNNGG 2 cut(s) 152, 227
BssMI GATC 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 2 cut(s) 262, 371
BstC8I GCNNGC 1 cut(s) 275
BstFNI CGCG 3 cut(s) 48, 86, 314
BstH2I RGCGCY 2 cut(s) 199, 387
BstHHI GCGC 4 cut(s) 48, 86, 198, 386
BstKTI GATC 1 cut(s) 186
BstMBI GATC 1 cut(s) 183
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 7 cut(s) 25, 68, 83, 102, 108, 111, 210
BstNI CCWGG 1 cut(s) 229
BstPAI GACNNNNGTC 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 5, 227
BstSFI CTRYAG 2 cut(s) 109, 163
BstSLI GKGCMC 1 cut(s) 279
BstUI CGCG 3 cut(s) 48, 86, 314
BstV1I GCAGC 6 cut(s) 83, 86, 89, 123, 188, 316
BstZI CGGCCG 1 cut(s) 75
BsuRI GGCC 6 cut(s) 77, 137, 159, 179, 213, 232
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 275
CfoI GCGC 4 cut(s) 48, 86, 198, 386
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 4 cut(s) 157, 211, 231, 352
CseI GACGC 1 cut(s) 320
CspAI ACCGGT 1 cut(s) 354
CviAII CATG 1 cut(s) 115
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
EaeI YGGCCR 2 cut(s) 75, 177
EagI CGGCCG 1 cut(s) 75
EclXI CGGCCG 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 352
Eco52I CGGCCG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 153
EcoO109I RGGNCCY 2 cut(s) 157, 211
EcoRII CCWGG 1 cut(s) 227
FaeI CATG 1 cut(s) 118
FaiI YATR 1 cut(s) 116
FaqI GGGAC 1 cut(s) 365
FatI CATG 1 cut(s) 114
FauI CCCGC 2 cut(s) 55, 230
GlaI GCGC 4 cut(s) 47, 85, 197, 385
HaeII RGCGCY 2 cut(s) 199, 387
HaeIII GGCC 6 cut(s) 77, 137, 159, 179, 213, 232
HapII CCGG 2 cut(s) 7, 355
HgaI GACGC 1 cut(s) 320
HhaI GCGC 4 cut(s) 48, 86, 198, 386
Hin1II CATG 1 cut(s) 118
Hin6I GCGC 4 cut(s) 46, 84, 196, 384
HinP1I GCGC 4 cut(s) 46, 84, 196, 384
HinfI GANTC 2 cut(s) 23, 317
HpaII CCGG 2 cut(s) 7, 355
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 2 cut(s) 187, 337
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 4 cut(s) 245, 262, 311, 314
HpyAV CCTTC 5 cut(s) 148, 163, 202, 334, 343
HpyCH4III ACNGT 2 cut(s) 262, 371
HpyCH4IV ACGT 1 cut(s) 407
HpyCH4V TGCA 4 cut(s) 111, 165, 204, 277
HpyF10VI GCNNNNNNNGC 7 cut(s) 25, 68, 83, 102, 108, 111, 210
HpySE526I ACGT 1 cut(s) 407
Hsp92II CATG 1 cut(s) 118
HspAI GCGC 4 cut(s) 46, 84, 196, 384
Kzo9I GATC 1 cut(s) 183
LmnI GCTCC 2 cut(s) 153, 381
Lsp1109I GCAGC 6 cut(s) 83, 86, 89, 123, 188, 316
MaeII ACGT 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 290
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 3 cut(s) 202, 310, 313
MhlI GDGCHC 1 cut(s) 279
MnlI CCTC 6 cut(s) 49, 59, 162, 170, 372, 397
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 282
MspA1I CMGCKG 2 cut(s) 201, 267
MspI CCGG 2 cut(s) 7, 355
MspR9I CCNGG 2 cut(s) 7, 229
MvaI CCWGG 1 cut(s) 229
MvnI CGCG 3 cut(s) 48, 86, 314
MwoI GCNNNNNNNGC 7 cut(s) 25, 68, 83, 102, 108, 111, 210
NciI CCSGG 1 cut(s) 7
NdeII GATC 1 cut(s) 183
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 2 cut(s) 158, 353
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 290
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PfeI GAWTC 2 cut(s) 23, 317
PinAI ACCGGT 1 cut(s) 354
PshAI GACNNNNGTC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 158, 353
PspPI GGNCC 4 cut(s) 157, 211, 231, 352
PstI CTGCAG 2 cut(s) 113, 167
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 1 cut(s) 252
Sau3AI GATC 1 cut(s) 183
Sau96I GGNCC 4 cut(s) 157, 211, 231, 352
ScrFI CCNGG 2 cut(s) 7, 229
SduI GDGCHC 1 cut(s) 279
SetI ASST 5 cut(s) 16, 60, 126, 150, 410
SfcI CTRYAG 2 cut(s) 109, 163
SinI GGWCC 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 282
StyD4I CCNGG 2 cut(s) 5, 227
TaaI ACNGT 2 cut(s) 262, 371
TaiI ACGT 1 cut(s) 410
TaqI TCGA 1 cut(s) 336
TauI GCSGC 7 cut(s) 46, 74, 77, 89, 201, 270, 273
TfiI GAWTC 2 cut(s) 23, 317
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 6 cut(s) 96, 99, 102, 111, 201, 329
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 53, 134
TspRI CASTG 1 cut(s) 241
VneI GTGCAC 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.