Rh5DG346100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0017632
Physical Location & Seq
Reverse (-)
47323157 .. 47323450
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG346100.1

Sequence Viewer

Length: 294 bp
ATGAACCTGCTCGTCTTGGCCTTCTACAAGCTCCCTCGGGGCCTCTGCAGGAAGGCTTCGGCCAAGATCAAGAAGAAGCGCCGCTGCAAGAAGGGCCTGTTGCCCCGCCCCAGGCCCACTGGCGACGGCGACTTTAAGACGACGGTCAGCGGCGGCGTGCACGATGATGATTGTGACAAGAAGAAGAACGACGACGCGGAATCCGATGGGGCTGCCTTCGAGAAGGAGATGTGGGACCGGTTTTACGGCAACGGTTTTTGGAGGAGCGCCTCGTCTAACAACAAAGAAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.97

Weight (kDa)

9.6

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017632)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g26780
malus_domestica MD03G1160300.v1.1 MD15G1108700.v1.1
prunus_persica Prupe.6G148600_v2.0.a1
pyrus_communis pycom03g11280 pycom08g10970 pycom15g09930
rosa_chinensis RchiOBHm_Chr5g0049201
rosa_rugosa Rorug05G0245700
rosa_samantha Rh5BG334000 Rh5DG346100
rosa_wichuraiana Rw5G030560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 15
AccII CGCG 1 cut(s) 197
AciI CCGC 5 cut(s) 82, 106, 150, 153, 197
AcoI YGGCCR 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 111
AgeI ACCGGT 1 cut(s) 237
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw21I GWGCWC 1 cut(s) 162
Alw44I GTGCAC 1 cut(s) 158
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 5 cut(s) 18, 40, 60, 94, 113
ApaLI GTGCAC 1 cut(s) 158
ApeKI GCWGC 2 cut(s) 84, 212
AsiGI ACCGGT 1 cut(s) 237
AspLEI GCGC 2 cut(s) 81, 269
AspS9I GGNCC 4 cut(s) 40, 94, 114, 235
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 1 cut(s) 235
BaeGI GKGCMC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 71, 199
BccI CCATC 1 cut(s) 200
BceAI ACGGC 2 cut(s) 142, 262
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 1 cut(s) 112
BfmI CTRYAG 1 cut(s) 46
BfoI RGCGCY 2 cut(s) 82, 270
BfuAI ACCTGC 1 cut(s) 15
BisI GCNGC 5 cut(s) 82, 85, 151, 154, 213
BlsI GCNGC 5 cut(s) 83, 86, 152, 155, 214
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 235
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 4 cut(s) 40, 94, 114, 235
BmiI GGNNCC 2 cut(s) 41, 236
BmrFI CCNGG 1 cut(s) 112
BoxI GACNNNNGTC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 35, 110
BsaWI WCCGGW 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse118I RCCGGY 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 2 cut(s) 35, 110
BseLI CCNNNNNNNGG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 277
BseSI GKGCMC 1 cut(s) 162
BseXI GCAGC 2 cut(s) 71, 199
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 5 cut(s) 20, 42, 62, 96, 115
BshTI ACCGGT 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 238
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 5 cut(s) 20, 42, 62, 96, 115
BsoBI CYCGRG 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 5 cut(s) 82, 106, 150, 153, 197
BspANI GGCC 5 cut(s) 20, 42, 62, 96, 115
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 2 cut(s) 41, 236
BspMAI CTGCAG 1 cut(s) 50
BspMI ACCTGC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 237
BsrI ACTGG 1 cut(s) 124
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 2 cut(s) 35, 110
BssMI GATC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 2 cut(s) 145, 254
BstC8I GCNNGC 1 cut(s) 158
BstFNI CGCG 1 cut(s) 197
BstH2I RGCGCY 2 cut(s) 82, 270
BstHHI GCGC 2 cut(s) 81, 269
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstNI CCWGG 1 cut(s) 112
BstPAI GACNNNNGTC 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 46
BstSLI GKGCMC 1 cut(s) 162
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 71, 199
BsuRI GGCC 5 cut(s) 20, 42, 62, 96, 115
BtsIMutI CAGTG 1 cut(s) 117
BveI ACCTGC 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 158
CfoI GCGC 2 cut(s) 81, 269
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 4 cut(s) 40, 94, 114, 235
CseI GACGC 1 cut(s) 203
CspAI ACCGGT 1 cut(s) 237
CviJI RGCY 8 cut(s) 20, 31, 42, 56, 62, 96, 115, 212
CviKI_1 RGCY 8 cut(s) 20, 31, 42, 56, 62, 96, 115, 212
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 36
EcoO109I RGGNCCY 2 cut(s) 40, 94
EcoRII CCWGG 1 cut(s) 110
FaqI GGGAC 1 cut(s) 248
FauI CCCGC 1 cut(s) 113
Fnu4HI GCNGC 5 cut(s) 82, 85, 151, 154, 213
Fsp4HI GCNGC 5 cut(s) 82, 85, 151, 154, 213
GlaI GCGC 2 cut(s) 80, 268
GluI GCNGC 5 cut(s) 82, 85, 151, 154, 213
HaeII RGCGCY 2 cut(s) 82, 270
HaeIII GGCC 5 cut(s) 20, 42, 62, 96, 115
HapII CCGG 1 cut(s) 238
HgaI GACGC 1 cut(s) 203
HhaI GCGC 2 cut(s) 81, 269
Hin6I GCGC 2 cut(s) 79, 267
HinP1I GCGC 2 cut(s) 79, 267
HinfI GANTC 1 cut(s) 200
HpaII CCGG 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 2 cut(s) 70, 220
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 4 cut(s) 128, 145, 194, 197
HpyAV CCTTC 5 cut(s) 31, 46, 85, 217, 226
HpyCH4III ACNGT 2 cut(s) 145, 254
HpyCH4IV ACGT 1 cut(s) 290
HpyCH4V TGCA 3 cut(s) 48, 87, 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 290
HspAI GCGC 2 cut(s) 79, 267
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 2 cut(s) 36, 264
LpnPI CCDG 7 cut(s) 20, 34, 97, 105, 110, 124, 251
Lsp1109I GCAGC 2 cut(s) 71, 199
MaeII ACGT 1 cut(s) 290
MaeIII GTNAC 1 cut(s) 173
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 3 cut(s) 85, 193, 196
MhlI GDGCHC 1 cut(s) 162
MnlI CCTC 4 cut(s) 45, 53, 255, 280
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 2 cut(s) 84, 150
MspI CCGG 1 cut(s) 238
MspR9I CCNGG 1 cut(s) 112
MvaI CCWGG 1 cut(s) 112
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 93
NdeII GATC 1 cut(s) 66
NlaIV GGNNCC 2 cut(s) 41, 236
NmuCI GTSAC 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 1 cut(s) 200
PinAI ACCGGT 1 cut(s) 237
PkrI GCNGC 5 cut(s) 83, 86, 152, 155, 214
PshAI GACNNNNGTC 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 41, 236
PspPI GGNCC 4 cut(s) 40, 94, 114, 235
PstI CTGCAG 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 5 cut(s) 82, 85, 151, 154, 213
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 4 cut(s) 40, 94, 114, 235
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 1 cut(s) 162
SetI ASST 3 cut(s) 9, 33, 293
SfcI CTRYAG 1 cut(s) 46
SinI GGWCC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 165
SsiI CCGC 5 cut(s) 82, 106, 150, 153, 197
StyD4I CCNGG 1 cut(s) 110
TaaI ACNGT 2 cut(s) 145, 254
TaiI ACGT 1 cut(s) 293
TaqI TCGA 1 cut(s) 219
TauI GCSGC 3 cut(s) 84, 153, 156
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 2 cut(s) 84, 212
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 124
VneI GTGCAC 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.