Rw5G030560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0017632
Physical Location & Seq
Reverse (-)
48549997 .. 48550416
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G030560.1

Sequence Viewer

Length: 420 bp
ATGACCCGGAAAGCTCTGCTGGAATCGCCACCCACAATGAAGCGGCGCGTGGGGGAGGTGGCGGGAGGAGCCGCGGCGGAGTGCGCGGCGGTGTGCTGCTGCTGCCCCTGCAGCATGATGAACCTGCTCGTCTTGGCCTTCTACAAGCTCCCTCGGGGCCTCTGCAGGAAGGCTTCGGCCAAGATCAAGAAGAAGCGCCGCTGCAAGAAGGGCCTGTTGCCCCGGCCCAGGCCCACTGTCGACGGCGACTTTAAGACCACGACCACGACGGTCAGCGGCCGCGTGCACGATGATGATTGTGACAAGAAGAAGAACGACGACGCGGAATCCGATGGGGCTGCCTTCGAGAAGGAGATGTGGGACCGCTTTTACGGCAACGGTTTTTGGAGGAGCGCCTCGTTTAACAACAAAGAAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.46

Weight (kDa)

9.39

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017632)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g26780
malus_domestica MD03G1160300.v1.1 MD15G1108700.v1.1
prunus_persica Prupe.6G148600_v2.0.a1
pyrus_communis pycom03g11280 pycom08g10970 pycom15g09930
rosa_chinensis RchiOBHm_Chr5g0049201
rosa_rugosa Rorug05G0245700
rosa_samantha Rh5BG334000 Rh5DG346100
rosa_wichuraiana Rw5G030560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 132
AccI GTMKAC 1 cut(s) 240
AccII CGCG 5 cut(s) 48, 74, 86, 282, 323
AcoI YGGCCR 2 cut(s) 177, 277
AfiI CCNNNNNNNGG 1 cut(s) 228
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 2 cut(s) 14, 148
AluI AGCT 2 cut(s) 14, 148
Alw21I GWGCWC 1 cut(s) 288
Alw44I GTGCAC 1 cut(s) 284
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 7 cut(s) 135, 157, 177, 211, 224, 230, 277
ApaLI GTGCAC 1 cut(s) 284
ApeKI GCWGC 6 cut(s) 96, 99, 102, 111, 201, 338
AspLEI GCGC 4 cut(s) 48, 86, 198, 395
AspS9I GGNCC 5 cut(s) 157, 211, 225, 231, 361
AsuC2I CCSGG 2 cut(s) 7, 223
AvaI CYCGRG 1 cut(s) 153
AvaII GGWCC 1 cut(s) 361
BaeGI GKGCMC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 6 cut(s) 83, 86, 89, 123, 188, 325
BccI CCATC 1 cut(s) 326
BceAI ACGGC 2 cut(s) 259, 388
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BciT130I CCWGG 1 cut(s) 229
BcnI CCSGG 2 cut(s) 7, 223
BfmI CTRYAG 2 cut(s) 109, 163
BfoI RGCGCY 2 cut(s) 199, 396
BfuAI ACCTGC 1 cut(s) 132
Bme1390I CCNGG 3 cut(s) 7, 223, 229
Bme18I GGWCC 1 cut(s) 361
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 5 cut(s) 157, 211, 225, 231, 361
BmiI GGNNCC 3 cut(s) 70, 158, 362
BmrFI CCNGG 3 cut(s) 7, 223, 229
BpuMI CCSGG 2 cut(s) 7, 223
BsaJI CCNNGG 4 cut(s) 72, 152, 221, 227
Bsc4I CCNNNNNNNGG 1 cut(s) 228
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 4 cut(s) 72, 152, 221, 227
BseLI CCNNNNNNNGG 1 cut(s) 228
BseRI GAGGAG 2 cut(s) 81, 403
BseSI GKGCMC 1 cut(s) 288
BseX3I CGGCCG 1 cut(s) 277
BseXI GCAGC 6 cut(s) 83, 86, 89, 123, 188, 325
Bsh1236I CGCG 5 cut(s) 48, 74, 86, 282, 323
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 7 cut(s) 137, 159, 179, 213, 226, 232, 279
BsiEI CGRYCG 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 288
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 2 cut(s) 7, 223
BslFI GGGAC 1 cut(s) 374
BslI CCNNNNNNNGG 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 374
BsnI GGCC 7 cut(s) 137, 159, 179, 213, 226, 232, 279
BsoBI CYCGRG 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 1 cut(s) 183
BspANI GGCC 7 cut(s) 137, 159, 179, 213, 226, 232, 279
BspFNI CGCG 5 cut(s) 48, 74, 86, 282, 323
BspLI GGNNCC 3 cut(s) 70, 158, 362
BspMAI CTGCAG 2 cut(s) 113, 167
BspMI ACCTGC 1 cut(s) 132
BssECI CCNNGG 4 cut(s) 72, 152, 221, 227
BssMI GATC 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 3 cut(s) 238, 271, 380
BstC8I GCNNGC 1 cut(s) 284
BstDSI CCRYGG 1 cut(s) 72
BstFNI CGCG 5 cut(s) 48, 74, 86, 282, 323
BstH2I RGCGCY 2 cut(s) 199, 396
BstHHI GCGC 4 cut(s) 48, 86, 198, 395
BstKTI GATC 1 cut(s) 186
BstMBI GATC 1 cut(s) 183
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 8 cut(s) 25, 68, 83, 102, 108, 111, 210, 372
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 3 cut(s) 5, 221, 227
BstSFI CTRYAG 2 cut(s) 109, 163
BstSLI GKGCMC 1 cut(s) 288
BstUI CGCG 5 cut(s) 48, 74, 86, 282, 323
BstV1I GCAGC 6 cut(s) 83, 86, 89, 123, 188, 325
BstZI CGGCCG 1 cut(s) 277
BsuRI GGCC 7 cut(s) 137, 159, 179, 213, 226, 232, 279
BtgI CCRYGG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 284
CciNI GCGGCCGC 1 cut(s) 277
CfoI GCGC 4 cut(s) 48, 86, 198, 395
Cfr13I GGNCC 5 cut(s) 157, 211, 225, 231, 361
Cfr42I CCGCGG 1 cut(s) 75
CseI GACGC 1 cut(s) 329
CviAII CATG 1 cut(s) 115
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
EaeI YGGCCR 2 cut(s) 177, 277
EagI CGGCCG 1 cut(s) 277
EciI GGCGGA 1 cut(s) 92
EclXI CGGCCG 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 361
Eco52I CGGCCG 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 153
EcoO109I RGGNCCY 2 cut(s) 157, 211
EcoRII CCWGG 1 cut(s) 227
FaeI CATG 1 cut(s) 118
FaiI YATR 1 cut(s) 116
FaqI GGGAC 1 cut(s) 374
FatI CATG 1 cut(s) 114
FauI CCCGC 1 cut(s) 55
FblI GTMKAC 1 cut(s) 240
GlaI GCGC 4 cut(s) 47, 85, 197, 394
HaeII RGCGCY 2 cut(s) 199, 396
HaeIII GGCC 7 cut(s) 137, 159, 179, 213, 226, 232, 279
HapII CCGG 2 cut(s) 7, 223
HgaI GACGC 1 cut(s) 329
HhaI GCGC 4 cut(s) 48, 86, 198, 395
Hin1II CATG 1 cut(s) 118
Hin6I GCGC 4 cut(s) 46, 84, 196, 393
HinP1I GCGC 4 cut(s) 46, 84, 196, 393
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 2 cut(s) 23, 326
HpaII CCGG 2 cut(s) 7, 223
Hpy166II GTNNAC 2 cut(s) 241, 286
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 2 cut(s) 187, 346
Hpy8I GTNNAC 2 cut(s) 241, 286
Hpy99I CGWCG 4 cut(s) 245, 271, 320, 323
HpyAV CCTTC 5 cut(s) 148, 163, 202, 343, 352
HpyCH4III ACNGT 3 cut(s) 238, 271, 380
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 4 cut(s) 111, 165, 204, 286
HpyF10VI GCNNNNNNNGC 8 cut(s) 25, 68, 83, 102, 108, 111, 210, 372
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 1 cut(s) 118
HspAI GCGC 4 cut(s) 46, 84, 196, 393
KspI CCGCGG 1 cut(s) 75
Kzo9I GATC 1 cut(s) 183
LmnI GCTCC 3 cut(s) 68, 153, 390
LpnPI CCDG 9 cut(s) 5, 20, 121, 137, 151, 214, 227, 236, 241
Lsp1109I GCAGC 6 cut(s) 83, 86, 89, 123, 188, 325
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 1 cut(s) 299
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 3 cut(s) 202, 319, 322
MhlI GDGCHC 1 cut(s) 288
MnlI CCTC 6 cut(s) 49, 59, 162, 170, 381, 406
MseI TTAA 2 cut(s) 252, 402
MslI CAYNNNNRTG 1 cut(s) 291
MspA1I CMGCKG 3 cut(s) 74, 201, 276
MspI CCGG 2 cut(s) 7, 223
MspR9I CCNGG 3 cut(s) 7, 223, 229
MvaI CCWGG 1 cut(s) 229
MvnI CGCG 5 cut(s) 48, 74, 86, 282, 323
MwoI GCNNNNNNNGC 8 cut(s) 25, 68, 83, 102, 108, 111, 210, 372
NciI CCSGG 2 cut(s) 7, 223
NdeII GATC 1 cut(s) 183
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 3 cut(s) 70, 158, 362
NmuCI GTSAC 1 cut(s) 299
NotI GCGGCCGC 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PfeI GAWTC 2 cut(s) 23, 326
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 3 cut(s) 70, 158, 362
PspPI GGNCC 5 cut(s) 157, 211, 225, 231, 361
PstI CTGCAG 2 cut(s) 113, 167
RseI CAYNNNNRTG 1 cut(s) 291
SacII CCGCGG 1 cut(s) 75
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 2 cut(s) 252, 402
Sau3AI GATC 1 cut(s) 183
Sau96I GGNCC 5 cut(s) 157, 211, 225, 231, 361
ScrFI CCNGG 3 cut(s) 7, 223, 229
SduI GDGCHC 1 cut(s) 288
SetI ASST 5 cut(s) 16, 60, 126, 150, 419
SfcI CTRYAG 2 cut(s) 109, 163
Sfr303I CCGCGG 1 cut(s) 75
SgrBI CCGCGG 1 cut(s) 75
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 291
StyD4I CCNGG 3 cut(s) 5, 221, 227
TaaI ACNGT 3 cut(s) 238, 271, 380
TaiI ACGT 1 cut(s) 419
TaqI TCGA 2 cut(s) 240, 345
TauI GCSGC 7 cut(s) 46, 74, 77, 89, 201, 279, 282
TfiI GAWTC 2 cut(s) 23, 326
Tru1I TTAA 2 cut(s) 252, 402
Tru9I TTAA 2 cut(s) 252, 402
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 6 cut(s) 96, 99, 102, 111, 201, 338
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 2 cut(s) 53, 134
TspRI CASTG 1 cut(s) 241
VneI GTGCAC 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.