pycom03g11280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0017632
Physical Location & Seq
Reverse (-)
10960521 .. 10960943
423 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g11280.1

Sequence Viewer

Length: 423 bp
ATGACTCGGGACCCCCTCTTTCAATCGCCAAAGTTGACTCGGCCGCCGCCCCGAGAGAAGCGGCGAGTCGGAGAAGTGGCCGGCGGCGCGGCAGCCGAGTGCGCGGCGGTGTGTTGCTGCTGCCCGTGCAGTGTAATGAATTTGCTTATATTGGCGGTGTACAAGGTCCCGAAGGGGCTGTGCATGAAGGCCTGGGCCCACAGGAAAAGGAAGCGACGGTGCGCGGTTCAGAAGAAGGGACGGCTCGGCGGCGGTGGCGACGACGACGACGACGACGGGAAGAGAGCGAGCAGCTGTACAGAAGGTGAGGGAGAGAAGAAGAGAAACGCCGAAACGGAGGGCGCTGATTTGTTGGAGAAGGAGATGTGGGACCGATTTCACGGTGCCGGATTTTGGAGGAGTGCTTCCCGGAGAGAATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.46

Weight (kDa)

9.26

Isoelectric Point (pI)

60.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017632)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g26780
malus_domestica MD03G1160300.v1.1 MD15G1108700.v1.1
prunus_persica Prupe.6G148600_v2.0.a1
pyrus_communis pycom03g11280 pycom08g10970 pycom15g09930
rosa_chinensis RchiOBHm_Chr5g0049201
rosa_rugosa Rorug05G0245700
rosa_samantha Rh5BG334000 Rh5DG346100
rosa_wichuraiana Rw5G030560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 383
AccII CGCG 3 cut(s) 89, 104, 224
AcoI YGGCCR 2 cut(s) 41, 78
AcsI RAATTY 1 cut(s) 139
AfaI GTAC 2 cut(s) 161, 298
AfiI CCNNNNNNNGG 1 cut(s) 393
AgsI TTSAA 1 cut(s) 23
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 1 cut(s) 294
AluI AGCT 1 cut(s) 294
Ama87I CYCGRG 2 cut(s) 6, 51
AoxI GGCC 4 cut(s) 41, 78, 189, 195
ApaI GGGCCC 1 cut(s) 199
ApeKI GCWGC 4 cut(s) 92, 117, 120, 291
ApoI RAATTY 1 cut(s) 139
AspLEI GCGC 4 cut(s) 89, 104, 224, 344
AspS9I GGNCC 5 cut(s) 10, 166, 195, 196, 370
AsuC2I CCSGG 1 cut(s) 409
AsuHPI GGTGA 1 cut(s) 317
AvaI CYCGRG 2 cut(s) 6, 51
AvaII GGWCC 3 cut(s) 10, 166, 370
BaeGI GKGCMC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 1 cut(s) 199
BbvI GCAGC 4 cut(s) 104, 104, 107, 303
BceAI ACGGC 1 cut(s) 257
BciT130I CCWGG 1 cut(s) 193
BcnI CCSGG 1 cut(s) 409
BfoI RGCGCY 1 cut(s) 345
Bme1390I CCNGG 2 cut(s) 193, 409
Bme18I GGWCC 3 cut(s) 10, 166, 370
BmeT110I CYCGRG 2 cut(s) 6, 51
BmgT120I GGNCC 5 cut(s) 10, 166, 195, 196, 370
BmiI GGNNCC 6 cut(s) 11, 12, 168, 197, 371, 385
BmrFI CCNGG 2 cut(s) 193, 409
BpuMI CCSGG 1 cut(s) 409
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse118I RCCGGY 1 cut(s) 80
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 393
BseRI GAGGAG 1 cut(s) 412
BseSI GKGCMC 1 cut(s) 199
BseX3I CGGCCG 1 cut(s) 41
BseXI GCAGC 4 cut(s) 104, 104, 107, 303
BsgI GTGCAG 1 cut(s) 148
Bsh1236I CGCG 3 cut(s) 89, 104, 224
Bsh1285I CGRYCG 1 cut(s) 44
BshFI GGCC 4 cut(s) 43, 80, 191, 197
BshNI GGYRCC 1 cut(s) 383
BsiEI CGRYCG 1 cut(s) 44
BsiHKCI CYCGRG 2 cut(s) 6, 51
BsiSI CCGG 3 cut(s) 81, 387, 409
BslFI GGGAC 4 cut(s) 23, 152, 252, 383
BslI CCNNNNNNNGG 1 cut(s) 393
BsmFI GGGAC 4 cut(s) 23, 152, 252, 383
BsnI GGCC 4 cut(s) 43, 80, 191, 197
BsoBI CYCGRG 2 cut(s) 6, 51
Bsp120I GGGCCC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 199
Bsp1407I TGTACA 2 cut(s) 159, 296
BspANI GGCC 4 cut(s) 43, 80, 191, 197
BspFNI CGCG 3 cut(s) 89, 104, 224
BspLI GGNNCC 6 cut(s) 11, 12, 168, 197, 371, 385
BspT107I GGYRCC 1 cut(s) 383
BsrFI RCCGGY 1 cut(s) 80
BsrGI TGTACA 2 cut(s) 159, 296
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 2 cut(s) 219, 383
Bst6I CTCTTC 2 cut(s) 275, 314
BstAUI TGTACA 2 cut(s) 159, 296
BstC8I GCNNGC 2 cut(s) 82, 289
BstFNI CGCG 3 cut(s) 89, 104, 224
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 4 cut(s) 89, 104, 224, 344
BstMCI CGRYCG 1 cut(s) 44
BstMWI GCNNNNNNNGC 4 cut(s) 86, 101, 126, 255
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 2 cut(s) 191, 407
BstSLI GKGCMC 1 cut(s) 199
BstUI CGCG 3 cut(s) 89, 104, 224
BstV1I GCAGC 4 cut(s) 104, 104, 107, 303
BstZI CGGCCG 1 cut(s) 41
BsuRI GGCC 4 cut(s) 43, 80, 191, 197
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 82, 289
CfoI GCGC 4 cut(s) 89, 104, 224, 344
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 5 cut(s) 10, 166, 195, 196, 370
Csp6I GTAC 2 cut(s) 160, 297
CviAII CATG 1 cut(s) 184
CviJI RGCY 8 cut(s) 43, 80, 95, 178, 191, 197, 244, 294
CviKI_1 RGCY 8 cut(s) 43, 80, 95, 178, 191, 197, 244, 294
CviQI GTAC 2 cut(s) 160, 297
EaeI YGGCCR 2 cut(s) 41, 78
EagI CGGCCG 1 cut(s) 41
Eam1104I CTCTTC 2 cut(s) 275, 314
EarI CTCTTC 2 cut(s) 275, 314
EclXI CGGCCG 1 cut(s) 41
Eco147I AGGCCT 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 199
Eco47I GGWCC 3 cut(s) 10, 166, 370
Eco52I CGGCCG 1 cut(s) 41
Eco88I CYCGRG 2 cut(s) 6, 51
EcoO109I RGGNCCY 2 cut(s) 10, 166
EcoRII CCWGG 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 199
FaeI CATG 1 cut(s) 187
FaiI YATR 2 cut(s) 149, 185
FaqI GGGAC 4 cut(s) 23, 152, 252, 383
FatI CATG 1 cut(s) 183
FriOI GRGCYC 1 cut(s) 199
GlaI GCGC 4 cut(s) 88, 103, 223, 343
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 4 cut(s) 43, 80, 191, 197
HapII CCGG 3 cut(s) 81, 387, 409
HhaI GCGC 4 cut(s) 89, 104, 224, 344
Hin1II CATG 1 cut(s) 187
Hin6I GCGC 4 cut(s) 87, 102, 222, 342
HinP1I GCGC 4 cut(s) 87, 102, 222, 342
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HinfI GANTC 4 cut(s) 4, 37, 66, 416
HpaII CCGG 3 cut(s) 81, 387, 409
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 36, 160
Hpy188I TCNGA 2 cut(s) 71, 231
Hpy188III TCNNGA 3 cut(s) 8, 169, 420
Hpy8I GTNNAC 2 cut(s) 36, 160
Hpy99I CGWCG 7 cut(s) 219, 263, 266, 269, 272, 275, 278
HpyAV CCTTC 5 cut(s) 166, 181, 229, 296, 352
HpyCH4III ACNGT 2 cut(s) 219, 383
HpyCH4V TGCA 2 cut(s) 129, 183
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 101, 126, 255
Hsp92II CATG 1 cut(s) 187
HspAI GCGC 4 cut(s) 87, 102, 222, 342
KflI GGGWCCC 1 cut(s) 10
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
LpnPI CCDG 5 cut(s) 94, 178, 187, 205, 400
Lsp1109I GCAGC 4 cut(s) 104, 104, 107, 303
MboII GAAGA 4 cut(s) 244, 292, 328, 331
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 1 cut(s) 139
MlyI GAGTC 2 cut(s) 31, 75
MmeI TCCRAC 2 cut(s) 49, 333
MnlI CCTC 4 cut(s) 26, 301, 331, 390
MroNI GCCGGC 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 294
MspI CCGG 3 cut(s) 81, 387, 409
MspR9I CCNGG 2 cut(s) 193, 409
MvaI CCWGG 1 cut(s) 193
MvnI CGCG 3 cut(s) 89, 104, 224
MwoI GCNNNNNNNGC 4 cut(s) 86, 101, 126, 255
NaeI GCCGGC 1 cut(s) 82
NciI CCSGG 1 cut(s) 409
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 6 cut(s) 11, 12, 168, 197, 371, 385
NmeAIII GCCGAG 3 cut(s) 19, 121, 225
PceI AGGCCT 1 cut(s) 191
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 270
PdiI GCCGGC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 416
PfoI TCCNGGA 1 cut(s) 407
PleI GAGTC 2 cut(s) 31, 74
PpsI GAGTC 2 cut(s) 31, 74
PpuMI RGGWCCY 2 cut(s) 10, 166
Psp5II RGGWCCY 2 cut(s) 10, 166
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 6 cut(s) 11, 12, 168, 197, 371, 385
PspOMI GGGCCC 1 cut(s) 195
PspPI GGNCC 5 cut(s) 10, 166, 195, 196, 370
PspPPI RGGWCCY 2 cut(s) 10, 166
PvuII CAGCTG 1 cut(s) 294
RsaI GTAC 2 cut(s) 161, 298
RsaNI GTAC 2 cut(s) 160, 297
Sau96I GGNCC 5 cut(s) 10, 166, 195, 196, 370
SchI GAGTC 2 cut(s) 31, 75
ScrFI CCNGG 2 cut(s) 193, 409
SduI GDGCHC 1 cut(s) 199
SetI ASST 3 cut(s) 168, 296, 307
SinI GGWCC 3 cut(s) 10, 166, 370
Sse9I AATT 1 cut(s) 139
SseBI AGGCCT 1 cut(s) 191
StuI AGGCCT 1 cut(s) 191
StyD4I CCNGG 2 cut(s) 191, 407
TaaI ACNGT 2 cut(s) 219, 383
TaqII GACCGA 1 cut(s) 387
TasI AATT 1 cut(s) 139
TatI WGTACW 2 cut(s) 159, 296
TauI GCSGC 7 cut(s) 46, 49, 64, 87, 92, 107, 252
TfiI GAWTC 1 cut(s) 416
TscAI CASTG 1 cut(s) 136
TseI GCWGC 4 cut(s) 92, 117, 120, 291
TspDTI ATGAA 2 cut(s) 152, 200
TspGWI ACGGA 1 cut(s) 350
TspRI CASTG 1 cut(s) 136
VpaK11BI GGWCC 3 cut(s) 10, 166, 370
XapI RAATTY 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.