Rorug05G0245700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017632
Physical Location & Seq
Forward (+)
26427895 .. 26430763
2869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0245700.1

Sequence Viewer

Length: 876 bp
ATGGCAAACCCTGCACAGATTACTCTTCTGGGCTCCACTTTCTGTGTGATGCTTACACTGCATTTTTCAGTACAGCTTCTCTCAGAACACTTGTTCTGCTGGAAGAAGCCAAAGGAGCAGAAGGCCATACTGGTCATTATACTTATGGCCCCCTTGTATGCCATAGATTCCTATGTGGGCTTGATTGATTTCCAGGGAAGCAAAGCTTTCTTTATGTTCTTGGACTCGGTCAAGGAGTGCTATGAAGCTTTGGTGATAGCCAAGTTCTTGGCTTTGCTGTATAGCTACTTGAACATATCTATAAGTAAAAACATAGTGCCTGATGAGATCAAAGGGAGGGAGATTCACCATTCGTTTCCAATGACTCTGTTTGTGCCTCGCTCTGTTCGTTTGAACCATCATACACTGAAGCTTCTCAAATACTGGACATGGCAATTTGTTGTTATTCGCCCTGTGTGCTCCATCTTGATGATTAGTCTTCAACTTATTGGAATATATCCCACTTGGGTTAGCTGGACATTCACTATGATTTTGAACATTTCAGTGTCACTGGCTCTGTATTCTCTTGTCATTTTCTACCATGTCTTTGATAAGGAGCTGGCACCACACAAACCTCTTGCTAAGTTCTTGTGCATCAAAGGGATTGTCTTCTTCTGCTTTTGGCAGGGAATTGTTCTTGATATTCTTGTAGCATTAAAAATAATTCGATCTCATCATATTTGGCTAGACGTGGAGCATATTGAGGAAGCTCTGCAGAACATTTTAGTGTGTGTGGAGATGGTTTTCTTCTCGATTGTTCAGAAGTATGCCTACGGTGCTGAACCTTATAGAGATGATGCTATATCAACTGCAAAACGGGATAAGAAGACAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

33.67

Weight (kDa)

8.57

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 11 - 276 1.8e-74 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017632)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g26780
malus_domestica MD03G1160300.v1.1 MD15G1108700.v1.1
prunus_persica Prupe.6G148600_v2.0.a1
pyrus_communis pycom03g11280 pycom08g10970 pycom15g09930
rosa_chinensis RchiOBHm_Chr5g0049201
rosa_rugosa Rorug05G0245700
rosa_samantha Rh5BG334000 Rh5DG346100
rosa_wichuraiana Rw5G030560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 601
AcuI CTGAAG 1 cut(s) 428
AfaI GTAC 1 cut(s) 72
AgsI TTSAA 4 cut(s) 292, 394, 482, 535
AjiI CACGTC 1 cut(s) 730
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 8 cut(s) 76, 206, 248, 285, 412, 513, 598, 749
AluI AGCT 8 cut(s) 76, 206, 248, 285, 412, 513, 598, 749
Alw21I GWGCWC 1 cut(s) 461
AoxI GGCC 2 cut(s) 123, 147
ArsI GACNNNNNNTTYG 2 cut(s) 630, 662
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 265, 338
BanI GGYRCC 1 cut(s) 601
BanII GRGCYC 1 cut(s) 35
BarI GAAGNNNNNNTAC 2 cut(s) 794, 826
BbsI GAAGAC 3 cut(s) 470, 640, 872
Bbv12I GWGCWC 1 cut(s) 461
BccI CCATC 3 cut(s) 405, 470, 772
BciT130I CCWGG 1 cut(s) 194
BfaI CTAG 1 cut(s) 725
BfmI CTRYAG 1 cut(s) 752
Bme1390I CCNGG 1 cut(s) 194
BmgBI CACGTC 1 cut(s) 730
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 3 cut(s) 34, 150, 603
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 3 cut(s) 39, 642, 826
BpiI GAAGAC 3 cut(s) 470, 640, 872
BsaJI CCNNGG 1 cut(s) 193
Bse1I ACTGG 3 cut(s) 135, 428, 555
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 3 cut(s) 135, 428, 555
BshFI GGCC 2 cut(s) 125, 149
BshNI GGYRCC 1 cut(s) 601
BsiHKAI GWGCWC 1 cut(s) 461
BsnI GGCC 2 cut(s) 125, 149
Bsp1286I GDGCHC 2 cut(s) 35, 461
Bsp143I GATC 2 cut(s) 327, 707
BspANI GGCC 2 cut(s) 125, 149
BspCNI CTCAG 1 cut(s) 95
BspLI GGNNCC 3 cut(s) 34, 150, 603
BspMAI CTGCAG 1 cut(s) 756
BspT107I GGYRCC 1 cut(s) 601
BsrI ACTGG 3 cut(s) 135, 428, 555
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 2 cut(s) 327, 707
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 815
Bst6I CTCTTC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 600
BstDEI CTNAG 2 cut(s) 82, 621
BstKTI GATC 2 cut(s) 330, 710
BstMBI GATC 2 cut(s) 327, 707
BstMWI GCNNNNNNNGC 5 cut(s) 11, 58, 115, 456, 815
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstSFI CTRYAG 1 cut(s) 752
BstV2I GAAGAC 3 cut(s) 470, 640, 872
BstXI CCANNNNNNTGG 1 cut(s) 268
BsuRI GGCC 2 cut(s) 125, 149
BtrI CACGTC 1 cut(s) 730
BtsI GCAGTG 1 cut(s) 56
BtsIMutI CAGTG 4 cut(s) 56, 404, 548, 549
Cac8I GCNNGC 1 cut(s) 600
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 71
CviAII CATG 2 cut(s) 429, 581
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 2 cut(s) 82, 621
DpnI GATC 2 cut(s) 329, 709
DpnII GATC 2 cut(s) 327, 707
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 35
FaeI CATG 2 cut(s) 432, 584
FalI AAGNNNNNCTT 2 cut(s) 190, 222
FatI CATG 2 cut(s) 428, 580
FriOI GRGCYC 1 cut(s) 35
FspBI CTAG 1 cut(s) 725
HaeIII GGCC 2 cut(s) 125, 149
Hin1II CATG 2 cut(s) 432, 584
HindIII AAGCTT 3 cut(s) 204, 246, 410
HinfI GANTC 4 cut(s) 167, 224, 343, 364
HphI GGTGA 2 cut(s) 265, 338
Hpy188I TCNGA 2 cut(s) 85, 801
Hpy188III TCNNGA 3 cut(s) 466, 677, 790
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 815
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 5 cut(s) 14, 61, 633, 754, 851
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 58, 115, 456, 815
HpyF3I CTNAG 2 cut(s) 82, 621
HpySE526I ACGT 1 cut(s) 729
Hsp92II CATG 2 cut(s) 432, 584
Kzo9I GATC 2 cut(s) 327, 707
LmnI GCTCC 5 cut(s) 38, 115, 464, 595, 733
LweI GCATC 3 cut(s) 39, 642, 826
MaeI CTAG 1 cut(s) 725
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 1 cut(s) 546
MalI GATC 2 cut(s) 329, 709
MboI GATC 2 cut(s) 327, 707
MboII GAAGA 6 cut(s) 17, 115, 470, 640, 643, 778
MhlI GDGCHC 2 cut(s) 35, 461
MluCI AATT 3 cut(s) 434, 669, 702
MlyI GAGTC 2 cut(s) 218, 358
MnlI CCTC 4 cut(s) 330, 387, 624, 736
MseI TTAA 1 cut(s) 695
MslI CAYNNNNRTG 3 cut(s) 467, 542, 764
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 5 cut(s) 11, 58, 115, 456, 815
NdeII GATC 2 cut(s) 327, 707
NlaIII CATG 2 cut(s) 432, 584
NlaIV GGNNCC 3 cut(s) 34, 150, 603
NmuCI GTSAC 1 cut(s) 546
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PfeI GAWTC 2 cut(s) 167, 343
PflFI GACNNNGTC 1 cut(s) 227
PleI GAGTC 2 cut(s) 218, 358
PpsI GAGTC 2 cut(s) 218, 358
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 3 cut(s) 34, 150, 603
PspPI GGNCC 1 cut(s) 148
PstI CTGCAG 1 cut(s) 756
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
RseI CAYNNNNRTG 3 cut(s) 467, 542, 764
SaqAI TTAA 1 cut(s) 695
Sau3AI GATC 2 cut(s) 327, 707
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 2 cut(s) 218, 358
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 2 cut(s) 35, 461
SfaNI GCATC 3 cut(s) 39, 642, 826
SfcI CTRYAG 1 cut(s) 752
SmiMI CAYNNNNRTG 3 cut(s) 467, 542, 764
Sse9I AATT 3 cut(s) 434, 669, 702
SspMI CTAG 1 cut(s) 725
StyD4I CCNGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 815
TaiI ACGT 1 cut(s) 732
TaqI TCGA 2 cut(s) 706, 791
TaqII GACCGA 1 cut(s) 217
TasI AATT 3 cut(s) 434, 669, 702
TatI WGTACW 1 cut(s) 70
TfiI GAWTC 2 cut(s) 167, 343
Tru1I TTAA 1 cut(s) 695
Tru9I TTAA 1 cut(s) 695
TscAI CASTG 4 cut(s) 63, 411, 549, 555
TseFI GTSAC 1 cut(s) 546
Tsp45I GTSAC 1 cut(s) 546
TspDTI ATGAA 1 cut(s) 258
TspRI CASTG 4 cut(s) 63, 411, 549, 555
Tth111I GACNNNGTC 1 cut(s) 227
XspI CTAG 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.