Prupe.6G148600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017632
Physical Location & Seq
Reverse (-)
12595436 .. 12595876
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G148600.1

Sequence Viewer

Length: 441 bp
ATGACTCGGAACTCCTCGTTTGAATCGCCGCCGTCGACTCGGCCGTTACCTCGCGAGAAGCGCCGAGTCGGCGAAGTCGCCGGCGGCGCGGCAGCGGAGTGCGCAGCGGTGTGCTGCTGCTGTCCCTGCAGCGTGATGAATCTGCTGATACTGACGGTGTACAAGGTCCCAAAGGGGCTGTGCAGGAAGGCCTGGGCCAATACCAAGAAGAAGCGGCGGTGCGCTGCTCAGAAGAAGGGGCTGCTGCAGCCCAGGCCTAAAGGGCTCGCCGGCGGCGTCCTCTTCAGAGATGACATGGACGCCAATAGAGACGCCGACGACGGCGGCGATGAGAAGAAGAGCGACGCGGAATCGGAGGGCGCAGATTTGCTGGAGAAGGAGATGTGGGCCCGCTTTTACGGAGCTGGCTTTTGGAGAAGTGCTTCTCAGAGAGAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.01

Weight (kDa)

9.2

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017632)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g26780
malus_domestica MD03G1160300.v1.1 MD15G1108700.v1.1
prunus_persica Prupe.6G148600_v2.0.a1
pyrus_communis pycom03g11280 pycom08g10970 pycom15g09930
rosa_chinensis RchiOBHm_Chr5g0049201
rosa_rugosa Rorug05G0245700
rosa_samantha Rh5BG334000 Rh5DG346100
rosa_wichuraiana Rw5G030560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 103
AccI GTMKAC 1 cut(s) 35
AccII CGCG 3 cut(s) 54, 89, 347
AcoI YGGCCR 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 268
AcyI GRCGYC 3 cut(s) 276, 300, 312
AfaI GTAC 1 cut(s) 161
AgsI TTSAA 1 cut(s) 23
AjnI CCWGG 2 cut(s) 191, 251
AluBI AGCT 1 cut(s) 404
AluI AGCT 1 cut(s) 404
Alw26I GTCTC 1 cut(s) 303
AoxI GGCC 5 cut(s) 41, 189, 195, 254, 387
ApaI GGGCCC 1 cut(s) 391
ApeKI GCWGC 9 cut(s) 92, 104, 114, 117, 129, 224, 241, 244, 247
Asp700I GAANNNNTTC 1 cut(s) 421
AspLEI GCGC 5 cut(s) 63, 89, 104, 224, 362
AspS9I GGNCC 4 cut(s) 166, 195, 387, 388
AvaII GGWCC 1 cut(s) 166
BaeGI GKGCMC 1 cut(s) 391
BanII GRGCYC 2 cut(s) 267, 391
BbvI GCAGC 9 cut(s) 101, 104, 104, 116, 141, 211, 228, 231, 259
BceAI ACGGC 3 cut(s) 16, 28, 337
BciT130I CCWGG 2 cut(s) 193, 253
BcoDI GTCTC 1 cut(s) 303
BfmI CTRYAG 2 cut(s) 127, 245
BfoI RGCGCY 1 cut(s) 64
BglI GCCNNNNNGGC 2 cut(s) 69, 262
Bme1390I CCNGG 2 cut(s) 193, 253
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 4 cut(s) 166, 195, 387, 388
BmiI GGNNCC 2 cut(s) 168, 389
BmrFI CCNGG 2 cut(s) 193, 253
BpmI CTGGAG 1 cut(s) 392
BsaHI GRCGYC 3 cut(s) 276, 300, 312
BsaJI CCNNGG 2 cut(s) 192, 251
Bse118I RCCGGY 2 cut(s) 80, 269
BseBI CCWGG 2 cut(s) 193, 253
BseDI CCNNGG 2 cut(s) 192, 251
BseMII CTCAG 2 cut(s) 242, 440
BseRI GAGGAG 1 cut(s) 4
BseSI GKGCMC 1 cut(s) 391
BseX3I CGGCCG 1 cut(s) 41
BseXI GCAGC 9 cut(s) 101, 104, 104, 116, 141, 211, 228, 231, 259
BsgI GTGCAG 1 cut(s) 202
Bsh1236I CGCG 3 cut(s) 54, 89, 347
Bsh1285I CGRYCG 1 cut(s) 44
BshFI GGCC 5 cut(s) 43, 191, 197, 256, 389
BsiEI CGRYCG 1 cut(s) 44
BsiSI CCGG 2 cut(s) 81, 270
BslFI GGGAC 2 cut(s) 108, 152
BsmAI GTCTC 1 cut(s) 303
BsmBI CGTCTC 1 cut(s) 303
BsmFI GGGAC 2 cut(s) 108, 152
BsnI GGCC 5 cut(s) 43, 191, 197, 256, 389
Bsp120I GGGCCC 1 cut(s) 387
Bsp1286I GDGCHC 2 cut(s) 267, 391
Bsp1407I TGTACA 1 cut(s) 159
Bsp68I TCGCGA 1 cut(s) 54
BspANI GGCC 5 cut(s) 43, 191, 197, 256, 389
BspCNI CTCAG 2 cut(s) 241, 439
BspFNI CGCG 3 cut(s) 54, 89, 347
BspLI GGNNCC 2 cut(s) 168, 389
BspMAI CTGCAG 2 cut(s) 131, 249
BspQI GCTCTTC 1 cut(s) 332
BsrFI RCCGGY 2 cut(s) 80, 269
BsrGI TGTACA 1 cut(s) 159
BssAI RCCGGY 2 cut(s) 80, 269
BssECI CCNNGG 2 cut(s) 192, 251
BssNI GRCGYC 3 cut(s) 276, 300, 312
Bst2UI CCWGG 2 cut(s) 193, 253
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 2 cut(s) 287, 332
BstACI GRCGYC 3 cut(s) 276, 300, 312
BstAUI TGTACA 1 cut(s) 159
BstC8I GCNNGC 5 cut(s) 82, 267, 271, 391, 406
BstDEI CTNAG 2 cut(s) 228, 426
BstFNI CGCG 3 cut(s) 54, 89, 347
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 5 cut(s) 63, 89, 104, 224, 362
BstMAI GTCTC 1 cut(s) 303
BstMCI CGRYCG 1 cut(s) 44
BstMWI GCNNNNNNNGC 8 cut(s) 60, 69, 86, 101, 126, 247, 253, 262
BstNI CCWGG 2 cut(s) 193, 253
BstSCI CCNGG 2 cut(s) 191, 251
BstSFI CTRYAG 2 cut(s) 127, 245
BstSLI GKGCMC 1 cut(s) 391
BstUI CGCG 3 cut(s) 54, 89, 347
BstV1I GCAGC 9 cut(s) 101, 104, 104, 116, 141, 211, 228, 231, 259
BstZI CGGCCG 1 cut(s) 41
BsuRI GGCC 5 cut(s) 43, 191, 197, 256, 389
BtgZI GCGATG 1 cut(s) 342
BtuMI TCGCGA 1 cut(s) 54
Cac8I GCNNGC 5 cut(s) 82, 267, 271, 391, 406
CfoI GCGC 5 cut(s) 63, 89, 104, 224, 362
Cfr10I RCCGGY 2 cut(s) 80, 269
Cfr13I GGNCC 4 cut(s) 166, 195, 387, 388
CseI GACGC 4 cut(s) 265, 308, 320, 353
Csp6I GTAC 1 cut(s) 160
CviAII CATG 1 cut(s) 295
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 2 cut(s) 228, 426
EaeI YGGCCR 1 cut(s) 41
EagI CGGCCG 1 cut(s) 41
Eam1104I CTCTTC 2 cut(s) 287, 332
EarI CTCTTC 2 cut(s) 287, 332
EclXI CGGCCG 1 cut(s) 41
Eco147I AGGCCT 2 cut(s) 191, 256
Eco24I GRGCYC 2 cut(s) 267, 391
Eco47I GGWCC 1 cut(s) 166
Eco52I CGGCCG 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 268
EcoO109I RGGNCCY 1 cut(s) 166
EcoRII CCWGG 2 cut(s) 191, 251
EcoT38I GRGCYC 2 cut(s) 267, 391
Esp3I CGTCTC 1 cut(s) 303
FaeI CATG 1 cut(s) 298
FaiI YATR 2 cut(s) 296, 439
FaqI GGGAC 2 cut(s) 108, 152
FatI CATG 1 cut(s) 294
FauI CCCGC 1 cut(s) 398
FblI GTMKAC 1 cut(s) 35
FriOI GRGCYC 2 cut(s) 267, 391
FspI TGCGCA 1 cut(s) 103
GlaI GCGC 5 cut(s) 62, 88, 103, 223, 361
GsuI CTGGAG 1 cut(s) 392
HaeII RGCGCY 1 cut(s) 64
HaeIII GGCC 5 cut(s) 43, 191, 197, 256, 389
HapII CCGG 2 cut(s) 81, 270
HgaI GACGC 4 cut(s) 265, 308, 320, 353
HhaI GCGC 5 cut(s) 63, 89, 104, 224, 362
Hin1I GRCGYC 3 cut(s) 276, 300, 312
Hin1II CATG 1 cut(s) 298
Hin6I GCGC 5 cut(s) 61, 87, 102, 222, 360
HinP1I GCGC 5 cut(s) 61, 87, 102, 222, 360
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HinfI GANTC 6 cut(s) 4, 23, 37, 66, 139, 350
HpaII CCGG 2 cut(s) 81, 270
Hpy166II GTNNAC 2 cut(s) 36, 160
Hpy188I TCNGA 5 cut(s) 9, 231, 287, 355, 429
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 2 cut(s) 36, 160
Hpy99I CGWCG 4 cut(s) 37, 320, 323, 347
HpyAV CCTTC 3 cut(s) 181, 229, 370
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 3 cut(s) 129, 183, 247
HpyF10VI GCNNNNNNNGC 8 cut(s) 60, 69, 86, 101, 126, 247, 253, 262
HpyF3I CTNAG 2 cut(s) 228, 426
Hsp92I GRCGYC 3 cut(s) 276, 300, 312
Hsp92II CATG 1 cut(s) 298
HspAI GCGC 5 cut(s) 61, 87, 102, 222, 360
KroI GCCGGC 2 cut(s) 80, 269
KroNI GCCGGC 2 cut(s) 82, 271
LguI GCTCTTC 1 cut(s) 332
LmnI GCTCC 1 cut(s) 401
Lsp1109I GCAGC 9 cut(s) 101, 104, 104, 116, 141, 211, 228, 231, 259
MaeIII GTNAC 1 cut(s) 45
MboII GAAGA 5 cut(s) 220, 244, 274, 346, 349
MhlI GDGCHC 2 cut(s) 267, 391
MluCI AATT 1 cut(s) 434
MlyI GAGTC 2 cut(s) 31, 75
MnlI CCTC 4 cut(s) 25, 60, 290, 349
MreI CGCCGGCG 2 cut(s) 80, 269
MroNI GCCGGC 2 cut(s) 80, 269
MroXI GAANNNNTTC 1 cut(s) 421
MspA1I CMGCKG 2 cut(s) 95, 107
MspI CCGG 2 cut(s) 81, 270
MspR9I CCNGG 2 cut(s) 193, 253
MvaI CCWGG 2 cut(s) 193, 253
MvnI CGCG 3 cut(s) 54, 89, 347
MwoI GCNNNNNNNGC 8 cut(s) 60, 69, 86, 101, 126, 247, 253, 262
NaeI GCCGGC 2 cut(s) 82, 271
NgoMIV GCCGGC 2 cut(s) 80, 269
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 2 cut(s) 168, 389
NmeAIII GCCGAG 2 cut(s) 19, 89
NruI TCGCGA 1 cut(s) 54
NsbI TGCGCA 1 cut(s) 103
PceI AGGCCT 2 cut(s) 191, 256
PciSI GCTCTTC 1 cut(s) 332
PcsI WCGNNNNNNNCGW 4 cut(s) 32, 41, 273, 324
PdiI GCCGGC 2 cut(s) 82, 271
PdmI GAANNNNTTC 1 cut(s) 421
PfeI GAWTC 3 cut(s) 23, 139, 350
PleI GAGTC 2 cut(s) 31, 74
PpsI GAGTC 2 cut(s) 31, 74
PpuMI RGGWCCY 1 cut(s) 166
Psp5II RGGWCCY 1 cut(s) 166
Psp6I CCWGG 2 cut(s) 191, 251
PspGI CCWGG 2 cut(s) 191, 251
PspN4I GGNNCC 2 cut(s) 168, 389
PspOMI GGGCCC 1 cut(s) 387
PspPI GGNCC 4 cut(s) 166, 195, 387, 388
PspPPI RGGWCCY 1 cut(s) 166
PstI CTGCAG 2 cut(s) 131, 249
RruI TCGCGA 1 cut(s) 54
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SalI GTCGAC 1 cut(s) 34
SapI GCTCTTC 1 cut(s) 332
Sau96I GGNCC 4 cut(s) 166, 195, 387, 388
SchI GAGTC 2 cut(s) 31, 75
ScrFI CCNGG 2 cut(s) 193, 253
SduI GDGCHC 2 cut(s) 267, 391
SetI ASST 3 cut(s) 52, 168, 406
SfcI CTRYAG 2 cut(s) 127, 245
SgrAI CRCCGGYG 2 cut(s) 80, 269
SinI GGWCC 1 cut(s) 166
Sse9I AATT 1 cut(s) 434
SseBI AGGCCT 2 cut(s) 191, 256
StuI AGGCCT 2 cut(s) 191, 256
StyD4I CCNGG 2 cut(s) 191, 251
TaaI ACNGT 1 cut(s) 157
TaqI TCGA 1 cut(s) 35
TasI AATT 1 cut(s) 434
TatI WGTACW 1 cut(s) 159
TauI GCSGC 6 cut(s) 31, 87, 92, 217, 276, 327
TfiI GAWTC 3 cut(s) 23, 139, 350
TseI GCWGC 9 cut(s) 92, 104, 114, 117, 129, 224, 241, 244, 247
TspDTI ATGAA 1 cut(s) 152
TspGWI ACGGA 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 35
XmnI GAANNNNTTC 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.