Inner membrane component of T3SS, cytoplasmic domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G21530 |
| fragaria_vesca | FvH4_3g27180 FvH4_3g27180 FvH4_3g27180 |
| malus_domestica | MD11G1181300.v1.1 |
| prunus_persica | Prupe.6G154100_v2.0.a1 |
| pyrus_communis | pycom11g15640 |
| rosa_chinensis | RchiOBHm_Chr5g0049851 |
| rosa_laevigata | RLG00000034657 |
| rosa_multiflora | Rmu_sc0001991.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00031920 |
| rosa_rugosa | Rorug05G0253000 Rorug05G0253100 |
| rosa_samantha | Rh5AG328200 Rh5BG338700 Rh5CG363900 Rh5DG351100 |
| rosa_wichuraiana | Rw5G030990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 328 |
| AciI | CCGC | 1 cut(s) | 322 |
| AclWI | GGATC | 1 cut(s) | 502 |
| AcoI | YGGCCR | 1 cut(s) | 319 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 328 |
| AgsI | TTSAA | 3 cut(s) | 268, 293, 303 |
| AjnI | CCWGG | 2 cut(s) | 466, 490 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 425, 457 |
| AluBI | AGCT | 3 cut(s) | 17, 151, 338 |
| AluI | AGCT | 3 cut(s) | 17, 151, 338 |
| Alw26I | GTCTC | 3 cut(s) | 175, 457, 517 |
| AlwI | GGATC | 1 cut(s) | 502 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 368 |
| Aor13HI | TCCGGA | 1 cut(s) | 328 |
| AoxI | GGCC | 1 cut(s) | 319 |
| ApeKI | GCWGC | 2 cut(s) | 44, 151 |
| AsuHPI | GGTGA | 2 cut(s) | 251, 480 |
| BbvI | GCAGC | 2 cut(s) | 56, 138 |
| BccI | CCATC | 3 cut(s) | 213, 236, 392 |
| BceAI | ACGGC | 1 cut(s) | 473 |
| BciT130I | CCWGG | 2 cut(s) | 468, 492 |
| BcoDI | GTCTC | 3 cut(s) | 175, 457, 517 |
| BfmI | CTRYAG | 2 cut(s) | 42, 201 |
| BisI | GCNGC | 3 cut(s) | 45, 152, 322 |
| BlsI | GCNGC | 3 cut(s) | 46, 153, 323 |
| Bme1390I | CCNGG | 2 cut(s) | 468, 492 |
| BmiI | GGNNCC | 2 cut(s) | 231, 404 |
| BmrFI | CCNGG | 2 cut(s) | 468, 492 |
| BmsI | GCATC | 4 cut(s) | 56, 147, 267, 393 |
| BpmI | CTGGAG | 2 cut(s) | 248, 489 |
| BsaI | GGTCTC | 1 cut(s) | 457 |
| BsaJI | CCNNGG | 1 cut(s) | 127 |
| BsaWI | WCCGGW | 1 cut(s) | 328 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 178, 208 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 328 |
| Bse1I | ACTGG | 1 cut(s) | 353 |
| BseAI | TCCGGA | 1 cut(s) | 328 |
| BseBI | CCWGG | 2 cut(s) | 468, 492 |
| BseDI | CCNNGG | 1 cut(s) | 127 |
| BseGI | GGATG | 1 cut(s) | 384 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 328 |
| BseMII | CTCAG | 1 cut(s) | 452 |
| BseNI | ACTGG | 1 cut(s) | 353 |
| BseRI | GAGGAG | 4 cut(s) | 42, 45, 48, 169 |
| BseXI | GCAGC | 2 cut(s) | 56, 138 |
| BsgI | GTGCAG | 1 cut(s) | 137 |
| BshFI | GGCC | 1 cut(s) | 321 |
| BsiSI | CCGG | 1 cut(s) | 329 |
| BslFI | GGGAC | 1 cut(s) | 451 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 328 |
| BsmAI | GTCTC | 3 cut(s) | 175, 457, 517 |
| BsmBI | CGTCTC | 1 cut(s) | 175 |
| BsmFI | GGGAC | 1 cut(s) | 451 |
| BsnI | GGCC | 1 cut(s) | 321 |
| Bso31I | GGTCTC | 1 cut(s) | 457 |
| Bsp13I | TCCGGA | 1 cut(s) | 328 |
| Bsp143I | GATC | 1 cut(s) | 494 |
| BspACI | CCGC | 1 cut(s) | 322 |
| BspANI | GGCC | 1 cut(s) | 321 |
| BspCNI | CTCAG | 1 cut(s) | 453 |
| BspEI | TCCGGA | 1 cut(s) | 328 |
| BspLI | GGNNCC | 2 cut(s) | 231, 404 |
| BspMAI | CTGCAG | 1 cut(s) | 46 |
| BspPI | GGATC | 1 cut(s) | 502 |
| BspTNI | GGTCTC | 1 cut(s) | 457 |
| BsrI | ACTGG | 1 cut(s) | 353 |
| BssECI | CCNNGG | 1 cut(s) | 127 |
| BssMI | GATC | 1 cut(s) | 494 |
| BssT1I | CCWWGG | 1 cut(s) | 127 |
| Bst2UI | CCWGG | 2 cut(s) | 468, 492 |
| Bst4CI | ACNGT | 3 cut(s) | 13, 316, 364 |
| Bst6I | CTCTTC | 1 cut(s) | 82 |
| BstC8I | GCNNGC | 3 cut(s) | 65, 378, 382 |
| BstDEI | CTNAG | 2 cut(s) | 461, 534 |
| BstF5I | GGATG | 1 cut(s) | 384 |
| BstKTI | GATC | 1 cut(s) | 497 |
| BstMAI | GTCTC | 3 cut(s) | 175, 457, 517 |
| BstMBI | GATC | 1 cut(s) | 494 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 23, 229 |
| BstNI | CCWGG | 2 cut(s) | 468, 492 |
| BstNSI | RCATGY | 1 cut(s) | 380 |
| BstSCI | CCNGG | 2 cut(s) | 466, 490 |
| BstSFI | CTRYAG | 2 cut(s) | 42, 201 |
| BstV1I | GCAGC | 2 cut(s) | 56, 138 |
| BstX2I | RGATCY | 1 cut(s) | 494 |
| BstYI | RGATCY | 1 cut(s) | 494 |
| BsuRI | GGCC | 1 cut(s) | 321 |
| BtsCI | GGATG | 1 cut(s) | 384 |
| Cac8I | GCNNGC | 3 cut(s) | 65, 378, 382 |
| CaiI | CAGNNNCTG | 1 cut(s) | 368 |
| CviAII | CATG | 1 cut(s) | 377 |
| CviJI | RGCY | 7 cut(s) | 17, 151, 223, 232, 321, 338, 460 |
| CviKI_1 | RGCY | 7 cut(s) | 17, 151, 223, 232, 321, 338, 460 |
| DdeI | CTNAG | 2 cut(s) | 461, 534 |
| DpnI | GATC | 1 cut(s) | 496 |
| DpnII | GATC | 1 cut(s) | 494 |
| EaeI | YGGCCR | 1 cut(s) | 319 |
| Eam1104I | CTCTTC | 1 cut(s) | 82 |
| EarI | CTCTTC | 1 cut(s) | 82 |
| Eco130I | CCWWGG | 1 cut(s) | 127 |
| Eco31I | GGTCTC | 1 cut(s) | 457 |
| EcoRII | CCWGG | 2 cut(s) | 466, 490 |
| EcoT14I | CCWWGG | 1 cut(s) | 127 |
| ErhI | CCWWGG | 1 cut(s) | 127 |
| Esp3I | CGTCTC | 1 cut(s) | 175 |
| FaeI | CATG | 1 cut(s) | 380 |
| FaiI | YATR | 2 cut(s) | 258, 378 |
| FaqI | GGGAC | 1 cut(s) | 451 |
| FatI | CATG | 1 cut(s) | 376 |
| Fnu4HI | GCNGC | 3 cut(s) | 45, 152, 322 |
| FokI | GGATG | 1 cut(s) | 371 |
| Fsp4HI | GCNGC | 3 cut(s) | 45, 152, 322 |
| GluI | GCNGC | 3 cut(s) | 45, 152, 322 |
| GsuI | CTGGAG | 2 cut(s) | 248, 489 |
| HaeIII | GGCC | 1 cut(s) | 321 |
| HapII | CCGG | 1 cut(s) | 329 |
| Hin1II | CATG | 1 cut(s) | 380 |
| HinfI | GANTC | 1 cut(s) | 349 |
| HpaII | CCGG | 1 cut(s) | 329 |
| HphI | GGTGA | 2 cut(s) | 251, 480 |
| Hpy188I | TCNGA | 3 cut(s) | 214, 276, 389 |
| Hpy188III | TCNNGA | 2 cut(s) | 227, 329 |
| HpyAV | CCTTC | 3 cut(s) | 81, 207, 335 |
| HpyCH4III | ACNGT | 3 cut(s) | 13, 316, 364 |
| HpyCH4V | TGCA | 6 cut(s) | 44, 154, 287, 359, 376, 520 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 23, 229 |
| HpyF3I | CTNAG | 2 cut(s) | 461, 534 |
| Hsp92II | CATG | 1 cut(s) | 380 |
| Kpn2I | TCCGGA | 1 cut(s) | 328 |
| Kzo9I | GATC | 1 cut(s) | 494 |
| LmnI | GCTCC | 2 cut(s) | 116, 229 |
| Lsp1109I | GCAGC | 2 cut(s) | 56, 138 |
| LweI | GCATC | 4 cut(s) | 56, 147, 267, 393 |
| MaeIII | GTNAC | 3 cut(s) | 310, 412, 502 |
| MalI | GATC | 1 cut(s) | 496 |
| MboI | GATC | 1 cut(s) | 494 |
| MboII | GAAGA | 2 cut(s) | 69, 72 |
| MflI | RGATCY | 1 cut(s) | 494 |
| MluCI | AATT | 1 cut(s) | 294 |
| MmeI | TCCRAC | 1 cut(s) | 138 |
| MnlI | CCTC | 7 cut(s) | 63, 66, 69, 85, 187, 190, 416 |
| MroI | TCCGGA | 1 cut(s) | 328 |
| MspI | CCGG | 1 cut(s) | 329 |
| MspR9I | CCNGG | 2 cut(s) | 468, 492 |
| MvaI | CCWGG | 2 cut(s) | 468, 492 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 23, 229 |
| NdeII | GATC | 1 cut(s) | 494 |
| NlaIII | CATG | 1 cut(s) | 380 |
| NlaIV | GGNNCC | 2 cut(s) | 231, 404 |
| NspI | RCATGY | 1 cut(s) | 380 |
| PaeI | GCATGC | 1 cut(s) | 380 |
| PfeI | GAWTC | 1 cut(s) | 349 |
| PkrI | GCNGC | 3 cut(s) | 46, 153, 323 |
| Psp6I | CCWGG | 2 cut(s) | 466, 490 |
| PspGI | CCWGG | 2 cut(s) | 466, 490 |
| PspN4I | GGNNCC | 2 cut(s) | 231, 404 |
| PstI | CTGCAG | 1 cut(s) | 46 |
| PstNI | CAGNNNCTG | 1 cut(s) | 368 |
| PsuI | RGATCY | 1 cut(s) | 494 |
| SatI | GCNGC | 3 cut(s) | 45, 152, 322 |
| Sau3AI | GATC | 1 cut(s) | 494 |
| ScrFI | CCNGG | 2 cut(s) | 468, 492 |
| SetI | ASST | 9 cut(s) | 19, 133, 153, 273, 340, 408, 469, 485, 493 |
| SfaNI | GCATC | 4 cut(s) | 56, 147, 267, 393 |
| SfcI | CTRYAG | 2 cut(s) | 42, 201 |
| SphI | GCATGC | 1 cut(s) | 380 |
| Sse9I | AATT | 1 cut(s) | 294 |
| SsiI | CCGC | 1 cut(s) | 322 |
| StyD4I | CCNGG | 2 cut(s) | 466, 490 |
| StyI | CCWWGG | 1 cut(s) | 127 |
| TaaI | ACNGT | 3 cut(s) | 13, 316, 364 |
| TasI | AATT | 1 cut(s) | 294 |
| TauI | GCSGC | 1 cut(s) | 324 |
| TfiI | GAWTC | 1 cut(s) | 349 |
| TseI | GCWGC | 2 cut(s) | 44, 151 |
| TspDTI | ATGAA | 1 cut(s) | 433 |
| TspGWI | ACGGA | 1 cut(s) | 160 |
| XceI | RCATGY | 1 cut(s) | 380 |