Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013459

Physical Location & Seq

Genomic Coordinates Forward (+)

43792368 .. 43796431

Gene Structure 4064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG363900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAAATAACAGCCCACTCTCTTTCCCATTTCTCTGCATCTCCTCGCTTGTTTCGTTCCAAAGCCTCCTGCTCTTCTCTTGTTGCTTCTACTACTGGACTACCTTTTCAGTGCTCCAACAACATTCTTACACGACAGCCCCAAGTCCAAGCCGTCAGGATCAAACCGAAGCAGCAACGAACCATAGGCGTTGGCCCCATATGTGCCTCTAACACACAAACTCCTCCTACAGATGTTTCCGAAAGATGGCTTCTGGAGCCTGTGGGTGATGGAGATACAAGGCATATTGGTTTCAAGGTTCAAATGCCGAATGCATTTGAAATTGCTTCTAATGTGATGACTGTTGGCCGCCTTCCTGAGAAAGCTGATTTAGTGATTCCAGTTGCAACAGTATCTGGTTTGCATGCTCGCATTCGAAAGAAAGATGGGAACCTCTTGGTAACAGATTTGGACAGCACCAATGGGACATTCATTGATGACCAACGGCTGAGACCCGGAGTTGTTGCCACCTTATCACCTGGATCTTGTGTTACATTTGGAGATGAACATTTGGCTGTGTTTCGTGTCTCAAAGTTAGATAATGTAGAAGCTGCAAGCAATCCAGGTCCCTCTGAAGATAAAGTAGAGACCGTCATCCCTGAAGAAGTAGAGACCGTCATCCCTACAGAAAACAGTAAAACAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

228

Amino Acids

24.58

Weight (kDa)

6.21

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yop-YscD_cpl	PF16697	105 - 186	3.3e-09	Inner membrane component of T3SS, cytoplasmic domain
FHA	PF00498	114 - 180	2.9e-15	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21530
fragaria_vesca	FvH4_3g27180 FvH4_3g27180 FvH4_3g27180
malus_domestica	MD11G1181300.v1.1
prunus_persica	Prupe.6G154100_v2.0.a1
pyrus_communis	pycom11g15640
rosa_chinensis	RchiOBHm_Chr5g0049851
rosa_laevigata	RLG00000034657
rosa_multiflora	Rmu_sc0001991.1_g000006
rosa_roxburghii	Rroxscaffold_1G00031920
rosa_rugosa	Rorug05G0253000 Rorug05G0253100
rosa_samantha	Rh5AG328200 Rh5BG338700 Rh5CG363900 Rh5DG351100
rosa_wichuraiana	Rw5G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	349
AclWI	GGATC	2 cut(s)	167, 529
AcoI	YGGCCR	1 cut(s)	346
AcuI	CTGAAG	2 cut(s)	633, 660
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	295, 302, 320
AjnI	CCWGG	2 cut(s)	517, 601
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	2 cut(s)	365, 590
AluI	AGCT	2 cut(s)	365, 590
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	4 cut(s)	484, 571, 620, 644
AlwI	GGATC	2 cut(s)	167, 529
AlwNI	CAGNNNCTG	1 cut(s)	395
AoxI	GGCC	2 cut(s)	193, 346
ApeKI	GCWGC	2 cut(s)	172, 590
AspS9I	GGNCC	2 cut(s)	194, 605
AsuC2I	CCSGG	1 cut(s)	495
AsuHPI	GGTGA	2 cut(s)	278, 507
AsuII	TTCGAA	1 cut(s)	415
AvaII	GGWCC	1 cut(s)	605
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	184, 577
BccI	CCATC	3 cut(s)	240, 263, 419
BceAI	ACGGC	2 cut(s)	137, 500
BciT130I	CCWGG	2 cut(s)	519, 603
BcnI	CCSGG	1 cut(s)	495
BcoDI	GTCTC	4 cut(s)	484, 571, 620, 644
BfmI	CTRYAG	2 cut(s)	228, 663
BisI	GCNGC	3 cut(s)	173, 349, 591
BlsI	GCNGC	3 cut(s)	174, 350, 592
Bme1390I	CCNGG	3 cut(s)	495, 519, 603
Bme18I	GGWCC	1 cut(s)	605
BmgT120I	GGNCC	2 cut(s)	194, 605
BmiI	GGNNCC	4 cut(s)	196, 258, 431, 607
BmrFI	CCNGG	3 cut(s)	495, 519, 603
BmsI	GCATC	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	275
Bpu14I	TTCGAA	1 cut(s)	415
BpuMI	CCSGG	1 cut(s)	495
BsaI	GGTCTC	3 cut(s)	484, 620, 644
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	2 cut(s)	100, 380
BseBI	CCWGG	2 cut(s)	519, 603
BseGI	GGATG	2 cut(s)	633, 657
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	348, 479
BseNI	ACTGG	2 cut(s)	100, 380
BseRI	GAGGAG	2 cut(s)	33, 213
BseXI	GCAGC	2 cut(s)	184, 577
BshFI	GGCC	2 cut(s)	195, 348
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	495
BslFI	GGGAC	2 cut(s)	478, 591
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	4 cut(s)	484, 571, 620, 644
BsmFI	GGGAC	2 cut(s)	478, 591
BsmI	GAATGC	2 cut(s)	316, 411
BsnI	GGCC	2 cut(s)	195, 348
Bso31I	GGTCTC	3 cut(s)	484, 620, 644
Bsp119I	TTCGAA	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	2 cut(s)	159, 521
BspACI	CCGC	1 cut(s)	349
BspANI	GGCC	2 cut(s)	195, 348
BspCNI	CTCAG	2 cut(s)	349, 480
BspLI	GGNNCC	4 cut(s)	196, 258, 431, 607
BspPI	GGATC	2 cut(s)	167, 529
BspQI	GCTCTTC	1 cut(s)	79
BspT104I	TTCGAA	1 cut(s)	415
BspTNI	GGTCTC	3 cut(s)	484, 620, 644
BsrI	ACTGG	2 cut(s)	100, 380
BssMI	GATC	2 cut(s)	159, 521
Bst2UI	CCWGG	2 cut(s)	519, 603
Bst4CI	ACNGT	5 cut(s)	343, 391, 631, 655, 674
Bst6I	CTCTTC	1 cut(s)	79
BstBI	TTCGAA	1 cut(s)	415
BstC8I	GCNNGC	3 cut(s)	405, 409, 595
BstDEI	CTNAG	2 cut(s)	357, 488
BstF5I	GGATG	2 cut(s)	633, 657
BstKTI	GATC	2 cut(s)	162, 524
BstMAI	GTCTC	4 cut(s)	484, 571, 620, 644
BstMBI	GATC	2 cut(s)	159, 521
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstNI	CCWGG	2 cut(s)	519, 603
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	3 cut(s)	493, 517, 601
BstSFI	CTRYAG	2 cut(s)	228, 663
BstV1I	GCAGC	2 cut(s)	184, 577
BstX2I	RGATCY	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	521
BsuRI	GGCC	2 cut(s)	195, 348
BtsCI	GGATG	2 cut(s)	633, 657
BtsIMutI	CAGTG	1 cut(s)	116
Cac8I	GCNNGC	3 cut(s)	405, 409, 595
CaiI	CAGNNNCTG	1 cut(s)	395
Cfr13I	GGNCC	2 cut(s)	194, 605
CviAII	CATG	1 cut(s)	404
DdeI	CTNAG	2 cut(s)	357, 488
DpnI	GATC	2 cut(s)	161, 523
DpnII	GATC	2 cut(s)	159, 521
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
Eco31I	GGTCTC	3 cut(s)	484, 620, 644
Eco47I	GGWCC	1 cut(s)	605
Eco57I	CTGAAG	2 cut(s)	633, 660
EcoO109I	RGGNCCY	1 cut(s)	605
EcoRII	CCWGG	2 cut(s)	517, 601
EcoT22I	ATGCAT	1 cut(s)	316
FaeI	CATG	1 cut(s)	407
FaiI	YATR	6 cut(s)	185, 200, 202, 285, 405, 685
FaqI	GGGAC	2 cut(s)	478, 591
FatI	CATG	1 cut(s)	403
FauNDI	CATATG	1 cut(s)	200
Fnu4HI	GCNGC	3 cut(s)	173, 349, 591
FokI	GGATG	2 cut(s)	620, 644
Fsp4HI	GCNGC	3 cut(s)	173, 349, 591
GluI	GCNGC	3 cut(s)	173, 349, 591
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	195, 348
HapII	CCGG	1 cut(s)	495
Hin1II	CATG	1 cut(s)	407
HinfI	GANTC	1 cut(s)	376
HpaII	CCGG	1 cut(s)	495
HphI	GGTGA	2 cut(s)	278, 507
Hpy188I	TCNGA	2 cut(s)	241, 613
Hpy188III	TCNNGA	3 cut(s)	157, 254, 356
HpyAV	CCTTC	1 cut(s)	362
HpyCH4III	ACNGT	5 cut(s)	343, 391, 631, 655, 674
HpyCH4V	TGCA	5 cut(s)	38, 314, 386, 403, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpyF3I	CTNAG	2 cut(s)	357, 488
Hsp92II	CATG	1 cut(s)	407
Kzo9I	GATC	2 cut(s)	159, 521
LguI	GCTCTTC	1 cut(s)	79
LmnI	GCTCC	2 cut(s)	119, 256
Lsp1109I	GCAGC	2 cut(s)	184, 577
LweI	GCATC	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	439, 529
MalI	GATC	2 cut(s)	161, 523
MboI	GATC	2 cut(s)	159, 521
MboII	GAAGA	3 cut(s)	66, 626, 653
MflI	RGATCY	1 cut(s)	521
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	1 cut(s)	321
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	6 cut(s)	54, 76, 217, 234, 443, 619
Mph1103I	ATGCAT	1 cut(s)	316
MspI	CCGG	1 cut(s)	495
MspR9I	CCNGG	3 cut(s)	495, 519, 603
Mva1269I	GAATGC	2 cut(s)	316, 411
MvaI	CCWGG	2 cut(s)	519, 603
MwoI	GCNNNNNNNGC	1 cut(s)	256
NciI	CCSGG	1 cut(s)	495
NdeI	CATATG	1 cut(s)	200
NdeII	GATC	2 cut(s)	159, 521
NlaIII	CATG	1 cut(s)	407
NlaIV	GGNNCC	4 cut(s)	196, 258, 431, 607
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	407
NspV	TTCGAA	1 cut(s)	415
PaeI	GCATGC	1 cut(s)	407
PciSI	GCTCTTC	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	1 cut(s)	52
PctI	GAATGC	2 cut(s)	316, 411
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	3 cut(s)	174, 350, 592
PpuMI	RGGWCCY	1 cut(s)	605
Psp5II	RGGWCCY	1 cut(s)	605
Psp6I	CCWGG	2 cut(s)	517, 601
PspGI	CCWGG	2 cut(s)	517, 601
PspN4I	GGNNCC	4 cut(s)	196, 258, 431, 607
PspPI	GGNCC	2 cut(s)	194, 605
PspPPI	RGGWCCY	1 cut(s)	605
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	521
SapI	GCTCTTC	1 cut(s)	79
SatI	GCNGC	3 cut(s)	173, 349, 591
Sau3AI	GATC	2 cut(s)	159, 521
Sau96I	GGNCC	2 cut(s)	194, 605
ScrFI	CCNGG	3 cut(s)	495, 519, 603
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	8 cut(s)	106, 300, 367, 435, 512, 520, 592, 607
SfaNI	GCATC	1 cut(s)	47
SfcI	CTRYAG	2 cut(s)	228, 663
SfuI	TTCGAA	1 cut(s)	415
SinI	GGWCC	1 cut(s)	605
SphI	GCATGC	1 cut(s)	407
Sse9I	AATT	1 cut(s)	321
SsiI	CCGC	1 cut(s)	349
StyD4I	CCNGG	3 cut(s)	493, 517, 601
TaaI	ACNGT	5 cut(s)	343, 391, 631, 655, 674
TaqI	TCGA	1 cut(s)	415
TasI	AATT	1 cut(s)	321
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	1 cut(s)	376
TscAI	CASTG	1 cut(s)	116
TseI	GCWGC	2 cut(s)	172, 590
TspDTI	ATGAA	2 cut(s)	460, 558
TspRI	CASTG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	605
XceI	RCATGY	1 cut(s)	407
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.