Inner membrane component of T3SS, cytoplasmic domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G21530 |
| fragaria_vesca | FvH4_3g27180 FvH4_3g27180 FvH4_3g27180 |
| malus_domestica | MD11G1181300.v1.1 |
| prunus_persica | Prupe.6G154100_v2.0.a1 |
| pyrus_communis | pycom11g15640 |
| rosa_chinensis | RchiOBHm_Chr5g0049851 |
| rosa_laevigata | RLG00000034657 |
| rosa_multiflora | Rmu_sc0001991.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00031920 |
| rosa_rugosa | Rorug05G0253000 Rorug05G0253100 |
| rosa_samantha | Rh5AG328200 Rh5BG338700 Rh5CG363900 Rh5DG351100 |
| rosa_wichuraiana | Rw5G030990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 173, 532, 602 |
| AcoI | YGGCCR | 1 cut(s) | 349 |
| AcsI | RAATTY | 1 cut(s) | 324 |
| AcuI | CTGAAG | 1 cut(s) | 636 |
| AfaI | GTAC | 2 cut(s) | 159, 190 |
| AgsI | TTSAA | 4 cut(s) | 69, 298, 323, 419 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 43, 75 |
| AluBI | AGCT | 7 cut(s) | 46, 80, 181, 368, 436, 557, 593 |
| AluI | AGCT | 7 cut(s) | 46, 80, 181, 368, 436, 557, 593 |
| Alw21I | GWGCWC | 1 cut(s) | 131 |
| Alw26I | GTCTC | 1 cut(s) | 574 |
| AlwI | GGATC | 3 cut(s) | 173, 532, 602 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 398 |
| AoxI | GGCC | 4 cut(s) | 53, 148, 196, 349 |
| ApeKI | GCWGC | 3 cut(s) | 86, 178, 593 |
| ApoI | RAATTY | 1 cut(s) | 324 |
| AspS9I | GGNCC | 2 cut(s) | 197, 468 |
| AsuC2I | CCSGG | 1 cut(s) | 522 |
| AsuHPI | GGTGA | 3 cut(s) | 281, 352, 554 |
| AvaII | GGWCC | 1 cut(s) | 468 |
| BbsI | GAAGAC | 2 cut(s) | 347, 662 |
| Bbv12I | GWGCWC | 1 cut(s) | 131 |
| BbvI | GCAGC | 3 cut(s) | 73, 190, 580 |
| BccI | CCATC | 2 cut(s) | 209, 266 |
| BceAI | ACGGC | 1 cut(s) | 336 |
| BcnI | CCSGG | 1 cut(s) | 522 |
| BcoDI | GTCTC | 1 cut(s) | 574 |
| BisI | GCNGC | 3 cut(s) | 87, 179, 594 |
| BlpI | GCTNAGC | 1 cut(s) | 15 |
| BlsI | GCNGC | 3 cut(s) | 88, 180, 595 |
| Bme1390I | CCNGG | 1 cut(s) | 522 |
| Bme18I | GGWCC | 1 cut(s) | 468 |
| BmgT120I | GGNCC | 2 cut(s) | 197, 468 |
| BmiI | GGNNCC | 4 cut(s) | 199, 261, 303, 469 |
| BmrFI | CCNGG | 1 cut(s) | 522 |
| BmsI | GCATC | 1 cut(s) | 28 |
| BpiI | GAAGAC | 2 cut(s) | 347, 662 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 15 |
| BpuMI | CCSGG | 1 cut(s) | 522 |
| BsaJI | CCNNGG | 3 cut(s) | 50, 145, 151 |
| Bse1I | ACTGG | 1 cut(s) | 383 |
| BseDI | CCNNGG | 3 cut(s) | 50, 145, 151 |
| BseMII | CTCAG | 1 cut(s) | 29 |
| BseNI | ACTGG | 1 cut(s) | 383 |
| BseRI | GAGGAG | 3 cut(s) | 202, 205, 225 |
| BseXI | GCAGC | 3 cut(s) | 73, 190, 580 |
| BsgI | GTGCAG | 1 cut(s) | 516 |
| BshFI | GGCC | 4 cut(s) | 55, 150, 198, 351 |
| BsiHKAI | GWGCWC | 1 cut(s) | 131 |
| BsiSI | CCGG | 1 cut(s) | 522 |
| BslFI | GGGAC | 1 cut(s) | 481 |
| BsmAI | GTCTC | 1 cut(s) | 574 |
| BsmFI | GGGAC | 1 cut(s) | 481 |
| BsmI | GAATGC | 1 cut(s) | 414 |
| BsnI | GGCC | 4 cut(s) | 55, 150, 198, 351 |
| Bsp1286I | GDGCHC | 1 cut(s) | 131 |
| Bsp143I | GATC | 3 cut(s) | 165, 524, 607 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 15 |
| BspANI | GGCC | 4 cut(s) | 55, 150, 198, 351 |
| BspCNI | CTCAG | 1 cut(s) | 28 |
| BspLI | GGNNCC | 4 cut(s) | 199, 261, 303, 469 |
| BspPI | GGATC | 3 cut(s) | 173, 532, 602 |
| BsrI | ACTGG | 1 cut(s) | 383 |
| BssECI | CCNNGG | 3 cut(s) | 50, 145, 151 |
| BssMI | GATC | 3 cut(s) | 165, 524, 607 |
| BssT1I | CCWWGG | 3 cut(s) | 50, 145, 151 |
| Bst4CI | ACNGT | 4 cut(s) | 346, 394, 489, 514 |
| Bst6I | CTCTTC | 1 cut(s) | 99 |
| BstC8I | GCNNGC | 2 cut(s) | 412, 598 |
| BstDEI | CTNAG | 5 cut(s) | 15, 161, 182, 219, 553 |
| BstKTI | GATC | 3 cut(s) | 168, 527, 610 |
| BstMAI | GTCTC | 1 cut(s) | 574 |
| BstMBI | GATC | 3 cut(s) | 165, 524, 607 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 52, 86 |
| BstSCI | CCNGG | 1 cut(s) | 520 |
| BstV1I | GCAGC | 3 cut(s) | 73, 190, 580 |
| BstV2I | GAAGAC | 2 cut(s) | 347, 662 |
| BstX2I | RGATCY | 2 cut(s) | 524, 607 |
| BstYI | RGATCY | 2 cut(s) | 524, 607 |
| BsuRI | GGCC | 4 cut(s) | 55, 150, 198, 351 |
| BtsIMutI | CAGTG | 1 cut(s) | 131 |
| Cac8I | GCNNGC | 2 cut(s) | 412, 598 |
| CaiI | CAGNNNCTG | 1 cut(s) | 398 |
| Cfr13I | GGNCC | 2 cut(s) | 197, 468 |
| Csp6I | GTAC | 2 cut(s) | 158, 189 |
| CviAII | CATG | 1 cut(s) | 407 |
| CviQI | GTAC | 2 cut(s) | 158, 189 |
| DdeI | CTNAG | 5 cut(s) | 15, 161, 182, 219, 553 |
| DpnI | GATC | 3 cut(s) | 167, 526, 609 |
| DpnII | GATC | 3 cut(s) | 165, 524, 607 |
| EaeI | YGGCCR | 1 cut(s) | 349 |
| Eam1104I | CTCTTC | 1 cut(s) | 99 |
| EarI | CTCTTC | 1 cut(s) | 99 |
| Eco130I | CCWWGG | 3 cut(s) | 50, 145, 151 |
| Eco147I | AGGCCT | 1 cut(s) | 55 |
| Eco32I | GATATC | 1 cut(s) | 637 |
| Eco47I | GGWCC | 1 cut(s) | 468 |
| Eco57I | CTGAAG | 1 cut(s) | 636 |
| EcoO109I | RGGNCCY | 1 cut(s) | 468 |
| EcoRV | GATATC | 1 cut(s) | 637 |
| EcoT14I | CCWWGG | 3 cut(s) | 50, 145, 151 |
| ErhI | CCWWGG | 3 cut(s) | 50, 145, 151 |
| FaeI | CATG | 1 cut(s) | 410 |
| FaiI | YATR | 6 cut(s) | 39, 207, 288, 290, 374, 408 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 144, 176 |
| FaqI | GGGAC | 1 cut(s) | 481 |
| FatI | CATG | 1 cut(s) | 406 |
| Fnu4HI | GCNGC | 3 cut(s) | 87, 179, 594 |
| Fsp4HI | GCNGC | 3 cut(s) | 87, 179, 594 |
| GluI | GCNGC | 3 cut(s) | 87, 179, 594 |
| HaeIII | GGCC | 4 cut(s) | 55, 150, 198, 351 |
| HapII | CCGG | 1 cut(s) | 522 |
| Hin1II | CATG | 1 cut(s) | 410 |
| HindIII | AAGCTT | 1 cut(s) | 44 |
| HpaII | CCGG | 1 cut(s) | 522 |
| HphI | GGTGA | 3 cut(s) | 281, 352, 554 |
| Hpy166II | GTNNAC | 1 cut(s) | 158 |
| Hpy188I | TCNGA | 2 cut(s) | 77, 616 |
| Hpy188III | TCNNGA | 2 cut(s) | 257, 359 |
| Hpy8I | GTNNAC | 1 cut(s) | 158 |
| HpyAV | CCTTC | 3 cut(s) | 422, 481, 621 |
| HpyCH4III | ACNGT | 4 cut(s) | 346, 394, 489, 514 |
| HpyCH4V | TGCA | 3 cut(s) | 389, 497, 596 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 52, 86 |
| HpyF3I | CTNAG | 5 cut(s) | 15, 161, 182, 219, 553 |
| Hsp92II | CATG | 1 cut(s) | 410 |
| Kzo9I | GATC | 3 cut(s) | 165, 524, 607 |
| LmnI | GCTCC | 1 cut(s) | 134 |
| LpnPI | CCDG | 8 cut(s) | 242, 276, 372, 384, 396, 483, 535, 618 |
| Lsp1109I | GCAGC | 3 cut(s) | 73, 190, 580 |
| LweI | GCATC | 1 cut(s) | 28 |
| MaeIII | GTNAC | 2 cut(s) | 340, 442 |
| MalI | GATC | 3 cut(s) | 167, 526, 609 |
| MboI | GATC | 3 cut(s) | 165, 524, 607 |
| MboII | GAAGA | 5 cut(s) | 54, 57, 86, 347, 629 |
| MflI | RGATCY | 2 cut(s) | 524, 607 |
| MhlI | GDGCHC | 1 cut(s) | 131 |
| MluCI | AATT | 2 cut(s) | 324, 575 |
| MmeI | TCCRAC | 1 cut(s) | 156 |
| MnlI | CCTC | 9 cut(s) | 220, 223, 226, 243, 246, 252, 331, 355, 622 |
| MspI | CCGG | 1 cut(s) | 522 |
| MspR9I | CCNGG | 1 cut(s) | 522 |
| Mva1269I | GAATGC | 1 cut(s) | 414 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 52, 86 |
| NciI | CCSGG | 1 cut(s) | 522 |
| NdeII | GATC | 3 cut(s) | 165, 524, 607 |
| NlaIII | CATG | 1 cut(s) | 410 |
| NlaIV | GGNNCC | 4 cut(s) | 199, 261, 303, 469 |
| NmuCI | GTSAC | 1 cut(s) | 340 |
| PceI | AGGCCT | 1 cut(s) | 55 |
| PctI | GAATGC | 1 cut(s) | 414 |
| PkrI | GCNGC | 3 cut(s) | 88, 180, 595 |
| PpuMI | RGGWCCY | 1 cut(s) | 468 |
| Psp5II | RGGWCCY | 1 cut(s) | 468 |
| PspN4I | GGNNCC | 4 cut(s) | 199, 261, 303, 469 |
| PspPI | GGNCC | 2 cut(s) | 197, 468 |
| PspPPI | RGGWCCY | 1 cut(s) | 468 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 387, 419 |
| PstNI | CAGNNNCTG | 1 cut(s) | 398 |
| PsuI | RGATCY | 2 cut(s) | 524, 607 |
| RsaI | GTAC | 2 cut(s) | 159, 190 |
| RsaNI | GTAC | 2 cut(s) | 158, 189 |
| SatI | GCNGC | 3 cut(s) | 87, 179, 594 |
| Sau3AI | GATC | 3 cut(s) | 165, 524, 607 |
| Sau96I | GGNCC | 2 cut(s) | 197, 468 |
| ScrFI | CCNGG | 1 cut(s) | 522 |
| SduI | GDGCHC | 1 cut(s) | 131 |
| SfaNI | GCATC | 1 cut(s) | 28 |
| SinI | GGWCC | 1 cut(s) | 468 |
| Sse9I | AATT | 2 cut(s) | 324, 575 |
| SseBI | AGGCCT | 1 cut(s) | 55 |
| StuI | AGGCCT | 1 cut(s) | 55 |
| StyD4I | CCNGG | 1 cut(s) | 520 |
| StyI | CCWWGG | 3 cut(s) | 50, 145, 151 |
| TaaI | ACNGT | 4 cut(s) | 346, 394, 489, 514 |
| TasI | AATT | 2 cut(s) | 324, 575 |
| TatI | WGTACW | 2 cut(s) | 157, 188 |
| TscAI | CASTG | 1 cut(s) | 131 |
| TseFI | GTSAC | 1 cut(s) | 340 |
| TseI | GCWGC | 3 cut(s) | 86, 178, 593 |
| Tsp45I | GTSAC | 1 cut(s) | 340 |
| TspDTI | ATGAA | 4 cut(s) | 395, 463, 561, 660 |
| TspRI | CASTG | 1 cut(s) | 131 |
| VpaK11BI | GGWCC | 1 cut(s) | 468 |
| XapI | RAATTY | 1 cut(s) | 324 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 246 |