Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0013459

Physical Location & Seq

Genomic Coordinates Reverse (-)

27808475 .. 27809184

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0253000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAAAGACGAGACCCTCCAGGCCACCGTCATCAGAGACCTCGTCCTCCTCGCTTGCGTCGGCCTCCGCCCCATTCTGGTCCACGGCGGCGGCCCTGAGATCAACCTCTGGCTCAAGCGCCTCAACATCGAGGTCAACTTCCACGACGGCCTCCGTGTCACCGACGCGCCCACCATGGAGATCGTCTCCATGGTCTTGGCCGGCAAAGTCAGCAAGCATTTGGTCTCCTTGATCAACCGGAAAGGAGTCAAGGCCATCGGCCTCTGCGGCTCCGACGGCGAGCTCATCACCTCCCGCCCCGCCCCCAACGCCGCCAAGTTAGGAAAATGGAATGAGGAGCACAGGGAGAAGGGAGAAGATGCTTATGATGATAACATTTTTGAAGATTTGGTAAGGAGATTTGAGACACCAGATAGAAGAAATCGGTGGAATTCCCCTTTGTTTGAGTTATGGCCACATAGAGAAGGTGTAGGATCTTCTGCTGCCATTCTAGATTCGATTTCGTATCTGACAAAGAAGGTGGACTTCGGAGAGGCTACGGCGGCTCACAGCGACCTGGCTTGGAGGAATGGCAGCTACGGGTTGTCTAGGCTTCTAGGCAGTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

202

Amino Acids

22.44

Weight (kDa)

7.02

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	8 - 100	1.6e-12	Amino acid kinase family
KTI12	PF08433	104 - 152	8.4e-11	Chromatin associated protein KTI12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21530
fragaria_vesca	FvH4_3g27180 FvH4_3g27180 FvH4_3g27180
malus_domestica	MD11G1181300.v1.1
prunus_persica	Prupe.6G154100_v2.0.a1
pyrus_communis	pycom11g15640
rosa_chinensis	RchiOBHm_Chr5g0049851
rosa_laevigata	RLG00000034657
rosa_multiflora	Rmu_sc0001991.1_g000006
rosa_roxburghii	Rroxscaffold_1G00031920
rosa_rugosa	Rorug05G0253000 Rorug05G0253100
rosa_samantha	Rh5AG328200 Rh5BG338700 Rh5CG363900 Rh5DG351100
rosa_wichuraiana	Rw5G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	167
AciI	CCGC	8 cut(s)	67, 87, 90, 267, 295, 300, 312, 542
AclWI	GGATC	1 cut(s)	481
AcoI	YGGCCR	2 cut(s)	198, 452
AcsI	RAATTY	1 cut(s)	430
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	383
AjnI	CCWGG	2 cut(s)	18, 555
AluBI	AGCT	2 cut(s)	283, 576
AluI	AGCT	2 cut(s)	283, 576
Alw21I	GWGCWC	2 cut(s)	285, 342
Alw26I	GTCTC	5 cut(s)	5, 30, 190, 229, 398
AlwI	GGATC	1 cut(s)	481
AoxI	GGCC	8 cut(s)	21, 61, 91, 148, 198, 252, 259, 452
ApeKI	GCWGC	2 cut(s)	482, 573
ApoI	RAATTY	1 cut(s)	430
AspLEI	GCGC	2 cut(s)	120, 169
AspS9I	GGNCC	2 cut(s)	79, 92
AsuHPI	GGTGA	2 cut(s)	151, 280
AvaII	GGWCC	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	2 cut(s)	285, 342
BbvI	GCAGC	2 cut(s)	469, 585
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	4 cut(s)	100, 163, 292, 555
BciT130I	CCWGG	2 cut(s)	20, 557
BclI	TGATCA	1 cut(s)	231
BcoDI	GTCTC	5 cut(s)	5, 30, 190, 229, 398
BfaI	CTAG	3 cut(s)	491, 588, 596
BfoI	RGCGCY	1 cut(s)	121
BglI	GCCNNNNNGGC	1 cut(s)	267
BisI	GCNGC	7 cut(s)	88, 91, 268, 312, 483, 543, 574
BlsI	GCNGC	7 cut(s)	89, 92, 269, 313, 484, 544, 575
Bme1390I	CCNGG	2 cut(s)	20, 557
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	79, 92
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	2 cut(s)	20, 557
BmsI	GCATC	1 cut(s)	349
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpuEI	CTTGAG	1 cut(s)	98
BsaI	GGTCTC	3 cut(s)	5, 30, 229
BsaJI	CCNNGG	3 cut(s)	82, 174, 189
BsaWI	WCCGGW	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	200
BseBI	CCWGG	2 cut(s)	20, 557
BseDI	CCNNGG	3 cut(s)	82, 174, 189
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	87
BseRI	GAGGAG	2 cut(s)	38, 350
BseXI	GCAGC	2 cut(s)	469, 585
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	8 cut(s)	23, 63, 93, 150, 200, 254, 261, 454
BsiHKAI	GWGCWC	2 cut(s)	285, 342
BsiSI	CCGG	2 cut(s)	201, 238
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	5 cut(s)	5, 30, 190, 229, 398
BsmBI	CGTCTC	1 cut(s)	190
BsnI	GGCC	8 cut(s)	23, 63, 93, 150, 200, 254, 261, 454
Bso31I	GGTCTC	3 cut(s)	5, 30, 229
Bsp1286I	GDGCHC	2 cut(s)	285, 342
Bsp143I	GATC	4 cut(s)	99, 180, 231, 473
Bsp19I	CCATGG	2 cut(s)	174, 189
BspACI	CCGC	8 cut(s)	67, 87, 90, 267, 295, 300, 312, 542
BspANI	GGCC	8 cut(s)	23, 63, 93, 150, 200, 254, 261, 454
BspCNI	CTCAG	1 cut(s)	88
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	481
BspTNI	GGTCTC	3 cut(s)	5, 30, 229
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	82, 174, 189
BssMI	GATC	4 cut(s)	99, 180, 231, 473
BssT1I	CCWWGG	2 cut(s)	174, 189
Bst2UI	CCWGG	2 cut(s)	20, 557
Bst4CI	ACNGT	1 cut(s)	28
BstC8I	GCNNGC	4 cut(s)	55, 202, 215, 281
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	3 cut(s)	82, 174, 189
BstFNI	CGCG	1 cut(s)	167
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	2 cut(s)	120, 169
BstKTI	GATC	4 cut(s)	102, 183, 234, 476
BstMAI	GTCTC	5 cut(s)	5, 30, 190, 229, 398
BstMBI	GATC	4 cut(s)	99, 180, 231, 473
BstMWI	GCNNNNNNNGC	5 cut(s)	210, 267, 276, 308, 542
BstNI	CCWGG	2 cut(s)	20, 557
BstSCI	CCNGG	2 cut(s)	18, 555
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	2 cut(s)	469, 585
BstX2I	RGATCY	1 cut(s)	473
BstXI	CCANNNNNNTGG	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	473
BsuRI	GGCC	8 cut(s)	23, 63, 93, 150, 200, 254, 261, 454
BtgI	CCRYGG	3 cut(s)	82, 174, 189
Cac8I	GCNNGC	4 cut(s)	55, 202, 215, 281
CfoI	GCGC	2 cut(s)	120, 169
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	79, 92
CseI	GACGC	2 cut(s)	46, 173
CspCI	CAANNNNNGTGG	2 cut(s)	501, 536
CviAII	CATG	2 cut(s)	175, 190
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	4 cut(s)	101, 182, 233, 475
DpnII	GATC	4 cut(s)	99, 180, 231, 473
EaeI	YGGCCR	2 cut(s)	198, 452
EciI	GGCGGA	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	283
Eco130I	CCWWGG	2 cut(s)	174, 189
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	3 cut(s)	5, 30, 229
Eco47I	GGWCC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	283
EcoICRI	GAGCTC	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	18, 555
EcoT14I	CCWWGG	2 cut(s)	174, 189
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	2 cut(s)	174, 189
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	2 cut(s)	178, 193
FaiI	YATR	5 cut(s)	176, 191, 366, 451, 459
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FatI	CATG	2 cut(s)	174, 189
FauI	CCCGC	2 cut(s)	302, 307
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	7 cut(s)	88, 91, 268, 312, 483, 543, 574
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	7 cut(s)	88, 91, 268, 312, 483, 543, 574
FspBI	CTAG	3 cut(s)	491, 588, 596
GlaI	GCGC	2 cut(s)	119, 168
GluI	GCNGC	7 cut(s)	88, 91, 268, 312, 483, 543, 574
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	8 cut(s)	23, 63, 93, 150, 200, 254, 261, 454
HapII	CCGG	2 cut(s)	201, 238
HgaI	GACGC	2 cut(s)	46, 173
HhaI	GCGC	2 cut(s)	120, 169
Hin1II	CATG	2 cut(s)	178, 193
Hin6I	GCGC	2 cut(s)	118, 167
HinP1I	GCGC	2 cut(s)	118, 167
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	2 cut(s)	246, 494
HpaII	CCGG	2 cut(s)	201, 238
HphI	GGTGA	2 cut(s)	151, 280
Hpy166II	GTNNAC	3 cut(s)	82, 136, 523
Hpy188I	TCNGA	4 cut(s)	35, 274, 510, 530
Hpy188III	TCNNGA	1 cut(s)	491
Hpy8I	GTNNAC	3 cut(s)	82, 136, 523
Hpy99I	CGWCG	4 cut(s)	62, 149, 167, 278
HpyAV	CCTTC	3 cut(s)	343, 458, 511
HpyCH4III	ACNGT	1 cut(s)	28
HpyF10VI	GCNNNNNNNGC	5 cut(s)	210, 267, 276, 308, 542
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	178, 193
HspAI	GCGC	2 cut(s)	118, 167
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	99, 180, 231, 473
LmnI	GCTCC	2 cut(s)	275, 337
Lsp1109I	GCAGC	2 cut(s)	469, 585
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	3 cut(s)	491, 588, 596
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	4 cut(s)	101, 182, 233, 475
MboI	GATC	4 cut(s)	99, 180, 231, 473
MboII	GAAGA	4 cut(s)	368, 395, 429, 468
MflI	RGATCY	1 cut(s)	473
MhlI	GDGCHC	2 cut(s)	285, 342
MlsI	TGGCCA	1 cut(s)	454
MluCI	AATT	1 cut(s)	430
MluNI	TGGCCA	1 cut(s)	454
MlyI	GAGTC	1 cut(s)	255
MmeI	TCCRAC	1 cut(s)	297
Mox20I	TGGCCA	1 cut(s)	454
MroNI	GCCGGC	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	454
Msp20I	TGGCCA	1 cut(s)	454
MspI	CCGG	2 cut(s)	201, 238
MspR9I	CCNGG	2 cut(s)	20, 557
MvaI	CCWGG	2 cut(s)	20, 557
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	5 cut(s)	210, 267, 276, 308, 542
NaeI	GCCGGC	1 cut(s)	202
NcoI	CCATGG	2 cut(s)	174, 189
NdeII	GATC	4 cut(s)	99, 180, 231, 473
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	2 cut(s)	178, 193
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	157
PdiI	GCCGGC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	494
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	7 cut(s)	89, 92, 269, 313, 484, 544, 575
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	2 cut(s)	18, 555
PspGI	CCWGG	2 cut(s)	18, 555
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	2 cut(s)	79, 92
PsuI	RGATCY	1 cut(s)	473
PsyI	GACNNNGTC	1 cut(s)	41
SacI	GAGCTC	1 cut(s)	285
SatI	GCNGC	7 cut(s)	88, 91, 268, 312, 483, 543, 574
Sau3AI	GATC	4 cut(s)	99, 180, 231, 473
Sau96I	GGNCC	2 cut(s)	79, 92
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	2 cut(s)	20, 557
SduI	GDGCHC	2 cut(s)	285, 342
SfaNI	GCATC	1 cut(s)	349
SinI	GGWCC	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	1 cut(s)	430
SsiI	CCGC	8 cut(s)	67, 87, 90, 267, 295, 300, 312, 542
SspMI	CTAG	3 cut(s)	491, 588, 596
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	18, 555
StyI	CCWWGG	2 cut(s)	174, 189
TaaI	ACNGT	1 cut(s)	28
TaqI	TCGA	2 cut(s)	129, 497
TasI	AATT	1 cut(s)	430
TauI	GCSGC	5 cut(s)	90, 93, 270, 314, 545
TfiI	GAWTC	1 cut(s)	494
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	482, 573
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	143
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	430
XbaI	TCTAGA	1 cut(s)	490
XspI	CTAG	3 cut(s)	491, 588, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.