Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001991.1

Orthogroup ID

OG0013459

Physical Location & Seq

Genomic Coordinates Reverse (-)

39735 .. 44429

Gene Structure 4695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001991.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atggaaataacagcccactctctttcccatttctctgcatctcctcgcttgtttcgttccaattccaaagcctcctcctcttctcttgttgcttctactactgcactaccttttcagtgctccaacaacattaatcttacacgacagccccgagtccaagccgtcaggatcaaaccgaagcagcaacgaaccatcggcgttggccccatatgtgcctctaacacacaaactcctcctacagatgtttccgaaagatggcttctggagcctgtgggtgatggagatacaaggcatattggtttcaaggttcaaatgccaaatgcatttgaaattgcttctaatgtggtgactgttggccgccttcctgagaaagctgatttagtgattccagttgcaacagtatctggtttgcatgctcgcattcgaaagaaagatgggaacctcttggtaacagatttggacagcaccaatgggacattcattgatgaccaacggctgagacccggagttgttgccaccttatcacctggatcttgtgttacatttgtatctggtttgcatgctcgcattcgaaagaaagatgggaacctattggtaacagatttggacagcaccaatgggacattcattgatgaccaacggatgagacctggagttgttgccaccttatcacctggatcttgtgttacatttggagatgaacatttggctgtgtttcgcgtctcaaagttagataatgtagaagctgcaagcaatccaggtccctctgaagataaagtagagaccgtcatccctgaagaaatccctactgaaaacagtaaaacagtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

276

Amino Acids

29.69

Weight (kDa)

7.73

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21530
fragaria_vesca	FvH4_3g27180 FvH4_3g27180 FvH4_3g27180
malus_domestica	MD11G1181300.v1.1
prunus_persica	Prupe.6G154100_v2.0.a1
pyrus_communis	pycom11g15640
rosa_chinensis	RchiOBHm_Chr5g0049851
rosa_laevigata	RLG00000034657
rosa_multiflora	Rmu_sc0001991.1_g000006
rosa_roxburghii	Rroxscaffold_1G00031920
rosa_rugosa	Rorug05G0253000 Rorug05G0253100
rosa_samantha	Rh5AG328200 Rh5BG338700 Rh5CG363900 Rh5DG351100
rosa_wichuraiana	Rw5G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	720
AciI	CCGC	1 cut(s)	358
AclWI	GGATC	3 cut(s)	176, 538, 685
AcoI	YGGCCR	1 cut(s)	355
AcuI	CTGAAG	2 cut(s)	789, 816
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	3 cut(s)	304, 311, 329
AjnI	CCWGG	4 cut(s)	526, 649, 673, 757
AjuI	GAANNNNNNNTTGG	4 cut(s)	461, 493, 608, 640
AluBI	AGCT	2 cut(s)	374, 746
AluI	AGCT	2 cut(s)	374, 746
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	4 cut(s)	493, 640, 727, 776
AlwI	GGATC	3 cut(s)	176, 538, 685
AlwNI	CAGNNNCTG	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	150
AoxI	GGCC	2 cut(s)	202, 355
ApeKI	GCWGC	2 cut(s)	181, 746
AseI	ATTAAT	1 cut(s)	132
AspS9I	GGNCC	2 cut(s)	203, 761
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	4 cut(s)	287, 358, 516, 663
AsuII	TTCGAA	2 cut(s)	424, 571
AvaI	CYCGRG	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	761
BaeI	ACNNNNGTAYC	2 cut(s)	531, 564
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	193, 733
BccI	CCATC	5 cut(s)	200, 249, 272, 428, 575
BceAI	ACGGC	2 cut(s)	146, 509
BciT130I	CCWGG	4 cut(s)	528, 651, 675, 759
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	4 cut(s)	493, 640, 727, 776
BfmI	CTRYAG	1 cut(s)	237
BisI	GCNGC	3 cut(s)	182, 358, 747
BlsI	GCNGC	3 cut(s)	183, 359, 748
Bme1390I	CCNGG	5 cut(s)	504, 528, 651, 675, 759
Bme18I	GGWCC	1 cut(s)	761
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	2 cut(s)	203, 761
BmiI	GGNNCC	5 cut(s)	205, 267, 440, 587, 763
BmrFI	CCNGG	5 cut(s)	504, 528, 651, 675, 759
BmsI	GCATC	1 cut(s)	47
BpmI	CTGGAG	2 cut(s)	284, 672
Bpu14I	TTCGAA	2 cut(s)	424, 571
BpuMI	CCSGG	1 cut(s)	504
BsaI	GGTCTC	3 cut(s)	493, 640, 776
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	389
BseBI	CCWGG	4 cut(s)	528, 651, 675, 759
BseGI	GGATG	2 cut(s)	648, 789
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	357, 488
BseNI	ACTGG	1 cut(s)	389
BseRI	GAGGAG	4 cut(s)	33, 64, 67, 222
BseXI	GCAGC	2 cut(s)	193, 733
BsgI	GTGCAG	1 cut(s)	87
Bsh1236I	CGCG	1 cut(s)	720
BshFI	GGCC	2 cut(s)	204, 357
BsiHKAI	GWGCWC	1 cut(s)	122
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	504
BslFI	GGGAC	3 cut(s)	487, 634, 747
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	4 cut(s)	493, 640, 727, 776
BsmBI	CGTCTC	1 cut(s)	727
BsmFI	GGGAC	3 cut(s)	487, 634, 747
BsmI	GAATGC	2 cut(s)	420, 567
BsnI	GGCC	2 cut(s)	204, 357
Bso31I	GGTCTC	3 cut(s)	493, 640, 776
BsoBI	CYCGRG	1 cut(s)	150
Bsp119I	TTCGAA	2 cut(s)	424, 571
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	3 cut(s)	168, 530, 677
BspACI	CCGC	1 cut(s)	358
BspANI	GGCC	2 cut(s)	204, 357
BspCNI	CTCAG	2 cut(s)	358, 489
BspFNI	CGCG	1 cut(s)	720
BspLI	GGNNCC	5 cut(s)	205, 267, 440, 587, 763
BspPI	GGATC	3 cut(s)	176, 538, 685
BspT104I	TTCGAA	2 cut(s)	424, 571
BspTNI	GGTCTC	3 cut(s)	493, 640, 776
BsrI	ACTGG	1 cut(s)	389
BssMI	GATC	3 cut(s)	168, 530, 677
Bst2UI	CCWGG	4 cut(s)	528, 651, 675, 759
Bst4CI	ACNGT	5 cut(s)	352, 400, 787, 818, 826
Bst6I	CTCTTC	1 cut(s)	85
BstBI	TTCGAA	2 cut(s)	424, 571
BstC8I	GCNNGC	5 cut(s)	414, 418, 561, 565, 751
BstDEI	CTNAG	2 cut(s)	366, 497
BstF5I	GGATG	2 cut(s)	648, 789
BstFNI	CGCG	1 cut(s)	720
BstKTI	GATC	3 cut(s)	171, 533, 680
BstMAI	GTCTC	4 cut(s)	493, 640, 727, 776
BstMBI	GATC	3 cut(s)	168, 530, 677
BstMWI	GCNNNNNNNGC	1 cut(s)	265
BstNI	CCWGG	4 cut(s)	528, 651, 675, 759
BstNSI	RCATGY	2 cut(s)	416, 563
BstSCI	CCNGG	5 cut(s)	502, 526, 649, 673, 757
BstSFI	CTRYAG	1 cut(s)	237
BstUI	CGCG	1 cut(s)	720
BstV1I	GCAGC	2 cut(s)	193, 733
BstX2I	RGATCY	2 cut(s)	530, 677
BstYI	RGATCY	2 cut(s)	530, 677
BsuRI	GGCC	2 cut(s)	204, 357
BtsCI	GGATG	2 cut(s)	648, 789
BtsIMutI	CAGTG	1 cut(s)	122
Cac8I	GCNNGC	5 cut(s)	414, 418, 561, 565, 751
CaiI	CAGNNNCTG	1 cut(s)	404
Cfr13I	GGNCC	2 cut(s)	203, 761
CseI	GACGC	1 cut(s)	709
CviAII	CATG	2 cut(s)	413, 560
DdeI	CTNAG	2 cut(s)	366, 497
DpnI	GATC	3 cut(s)	170, 532, 679
DpnII	GATC	3 cut(s)	168, 530, 677
EaeI	YGGCCR	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco31I	GGTCTC	3 cut(s)	493, 640, 776
Eco47I	GGWCC	1 cut(s)	761
Eco57I	CTGAAG	2 cut(s)	789, 816
Eco88I	CYCGRG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRII	CCWGG	4 cut(s)	526, 649, 673, 757
EcoT22I	ATGCAT	1 cut(s)	325
Esp3I	CGTCTC	1 cut(s)	727
FaeI	CATG	2 cut(s)	416, 563
FaiI	YATR	6 cut(s)	209, 211, 294, 414, 561, 829
FaqI	GGGAC	3 cut(s)	487, 634, 747
FatI	CATG	2 cut(s)	412, 559
FauNDI	CATATG	1 cut(s)	209
Fnu4HI	GCNGC	3 cut(s)	182, 358, 747
FokI	GGATG	2 cut(s)	655, 776
Fsp4HI	GCNGC	3 cut(s)	182, 358, 747
GluI	GCNGC	3 cut(s)	182, 358, 747
GsuI	CTGGAG	2 cut(s)	284, 672
HaeIII	GGCC	2 cut(s)	204, 357
HapII	CCGG	1 cut(s)	504
HgaI	GACGC	1 cut(s)	709
Hin1II	CATG	2 cut(s)	416, 563
HinfI	GANTC	2 cut(s)	153, 385
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	4 cut(s)	287, 358, 516, 663
Hpy188I	TCNGA	2 cut(s)	250, 769
Hpy188III	TCNNGA	3 cut(s)	166, 263, 365
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	5 cut(s)	352, 400, 787, 818, 826
HpyCH4V	TGCA	7 cut(s)	38, 104, 323, 395, 412, 559, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	265
HpyF3I	CTNAG	2 cut(s)	366, 497
Hsp92II	CATG	2 cut(s)	416, 563
Kzo9I	GATC	3 cut(s)	168, 530, 677
LmnI	GCTCC	2 cut(s)	125, 265
Lsp1109I	GCAGC	2 cut(s)	193, 733
LweI	GCATC	1 cut(s)	47
MaeIII	GTNAC	5 cut(s)	346, 448, 538, 595, 685
MalI	GATC	3 cut(s)	170, 532, 679
MboI	GATC	3 cut(s)	168, 530, 677
MboII	GAAGA	3 cut(s)	72, 782, 809
MflI	RGATCY	2 cut(s)	530, 677
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	2 cut(s)	61, 330
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	8 cut(s)	54, 82, 85, 88, 226, 243, 452, 775
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	1 cut(s)	132
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	5 cut(s)	504, 528, 651, 675, 759
Mva1269I	GAATGC	2 cut(s)	420, 567
MvaI	CCWGG	4 cut(s)	528, 651, 675, 759
MvnI	CGCG	1 cut(s)	720
MwoI	GCNNNNNNNGC	1 cut(s)	265
NciI	CCSGG	1 cut(s)	504
NdeI	CATATG	1 cut(s)	209
NdeII	GATC	3 cut(s)	168, 530, 677
NlaIII	CATG	2 cut(s)	416, 563
NlaIV	GGNNCC	5 cut(s)	205, 267, 440, 587, 763
NmuCI	GTSAC	1 cut(s)	346
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	2 cut(s)	416, 563
NspV	TTCGAA	2 cut(s)	424, 571
PaeI	GCATGC	2 cut(s)	416, 563
PcsI	WCGNNNNNNNCGW	2 cut(s)	52, 148
PctI	GAATGC	2 cut(s)	420, 567
PfeI	GAWTC	1 cut(s)	385
PkrI	GCNGC	3 cut(s)	183, 359, 748
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PpuMI	RGGWCCY	1 cut(s)	761
PshBI	ATTAAT	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	761
Psp6I	CCWGG	4 cut(s)	526, 649, 673, 757
PspGI	CCWGG	4 cut(s)	526, 649, 673, 757
PspN4I	GGNNCC	5 cut(s)	205, 267, 440, 587, 763
PspPI	GGNCC	2 cut(s)	203, 761
PspPPI	RGGWCCY	1 cut(s)	761
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	2 cut(s)	530, 677
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	3 cut(s)	182, 358, 747
Sau3AI	GATC	3 cut(s)	168, 530, 677
Sau96I	GGNCC	2 cut(s)	203, 761
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	5 cut(s)	504, 528, 651, 675, 759
SduI	GDGCHC	1 cut(s)	122
SfaNI	GCATC	1 cut(s)	47
SfcI	CTRYAG	1 cut(s)	237
SfuI	TTCGAA	2 cut(s)	424, 571
SinI	GGWCC	1 cut(s)	761
SphI	GCATGC	2 cut(s)	416, 563
Sse9I	AATT	2 cut(s)	61, 330
SsiI	CCGC	1 cut(s)	358
StyD4I	CCNGG	5 cut(s)	502, 526, 649, 673, 757
TaaI	ACNGT	5 cut(s)	352, 400, 787, 818, 826
TaqI	TCGA	2 cut(s)	424, 571
TasI	AATT	2 cut(s)	61, 330
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	122
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	2 cut(s)	181, 746
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	3 cut(s)	469, 616, 714
TspGWI	ACGGA	1 cut(s)	655
TspRI	CASTG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	761
VspI	ATTAAT	1 cut(s)	132
XceI	RCATGY	2 cut(s)	416, 563
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.