Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0013459

Physical Location & Seq

Genomic Coordinates Forward (+)

27815307 .. 27817284

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0253100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGTGTCGATTTCAAGTGGTTTCCGTGAGTACTTGAAACGTAGTCTCGCAAGAGTTGCTAAGATCACTAGATGGAGTCTGACGGCACGAATGATTCTGGGCCTTACTGTTTTTCTGGTTATCTGGAGCTACAAATTGTACTGGAAAAAGTTCCTAAAGGAAGATGCAATTGAGGAATTCTTCAATGCATGCAAGAAACACAGGACATATGGCGAGAGGGAGAAGTTCCTGTTGCTGATTTCTTGTGGTATTCTGCTGCCAGACCCTCAGGCAGGAAAAGAGATGCCCTTCCACAGGATGGCTGAGGAGGCTGAAAAGCTTAAAGATGAAGTAGAGGCACTGCAACAAGAAAAGTCAAGGTTGCTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

123

Amino Acids

14.5

Weight (kDa)

9.42

Isoelectric Point (pI)

50.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21530
fragaria_vesca	FvH4_3g27180 FvH4_3g27180 FvH4_3g27180
malus_domestica	MD11G1181300.v1.1
prunus_persica	Prupe.6G154100_v2.0.a1
pyrus_communis	pycom11g15640
rosa_chinensis	RchiOBHm_Chr5g0049851
rosa_laevigata	RLG00000034657
rosa_multiflora	Rmu_sc0001991.1_g000006
rosa_roxburghii	Rroxscaffold_1G00031920
rosa_rugosa	Rorug05G0253000 Rorug05G0253100
rosa_samantha	Rh5AG328200 Rh5BG338700 Rh5CG363900 Rh5DG351100
rosa_wichuraiana	Rw5G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	176
AfaI	GTAC	2 cut(s)	32, 140
AfiI	CCNNNNNNNGG	3 cut(s)	272, 294, 298
AgsI	TTSAA	3 cut(s)	15, 37, 184
AluBI	AGCT	2 cut(s)	129, 319
AluI	AGCT	2 cut(s)	129, 319
Alw26I	GTCTC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	176
Asp700I	GAANNNNTTC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	100
AxyI	CCTNAGG	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	2 cut(s)	66, 292
BceAI	ACGGC	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	368
BisI	GCNGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	258
BmcAI	AGTACT	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	100
BmsI	GCATC	2 cut(s)	154, 273
BpmI	CTGGAG	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	3 cut(s)	272, 294, 298
Bse1I	ACTGG	1 cut(s)	146
Bse21I	CCTNAGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	3 cut(s)	272, 294, 298
BseMII	CTCAG	2 cut(s)	281, 294
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	243
BshFI	GGCC	1 cut(s)	102
BslI	CCNNNNNNNGG	3 cut(s)	272, 294, 298
BsmAI	GTCTC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	2 cut(s)	280, 295
BsrI	ACTGG	1 cut(s)	146
BssMI	GATC	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	109
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	3 cut(s)	60, 267, 303
BstENI	CCTNNNNNAGG	2 cut(s)	270, 292
BstF5I	GGATG	1 cut(s)	303
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 308
BstNSI	RCATGY	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	368
BstV1I	GCAGC	1 cut(s)	243
Bsu36I	CCTNAGG	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	303
BtsI	GCAGTG	1 cut(s)	338
BtsIMutI	CAGTG	1 cut(s)	338
Cac8I	GCNNGC	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	31, 139
CviAII	CATG	1 cut(s)	189
CviJI	RGCY	5 cut(s)	102, 129, 302, 311, 319
CviKI_1	RGCY	5 cut(s)	102, 129, 302, 311, 319
CviQI	GTAC	2 cut(s)	31, 139
DdeI	CTNAG	3 cut(s)	60, 267, 303
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eco81I	CCTNAGG	1 cut(s)	267
EcoNI	CCTNNNNNAGG	2 cut(s)	270, 292
EcoRI	GAATTC	1 cut(s)	176
EcoT22I	ATGCAT	1 cut(s)	190
FaeI	CATG	1 cut(s)	192
FaiI	YATR	4 cut(s)	190, 208, 210, 370
FatI	CATG	1 cut(s)	188
FauNDI	CATATG	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	257
FokI	GGATG	1 cut(s)	310
Fsp4HI	GCNGC	1 cut(s)	257
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	1 cut(s)	257
GsuI	CTGGAG	1 cut(s)	145
HaeIII	GGCC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	192
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	2 cut(s)	76, 94
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	4 cut(s)	167, 188, 192, 343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 308
HpyF3I	CTNAG	3 cut(s)	60, 267, 303
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	126
Lsp1109I	GCAGC	1 cut(s)	243
LweI	GCATC	2 cut(s)	154, 273
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	40
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	2 cut(s)	172, 173
MfeI	CAATTG	1 cut(s)	168
MluCI	AATT	3 cut(s)	134, 168, 176
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	6 cut(s)	166, 210, 276, 298, 301, 328
Mph1103I	ATGCAT	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	1 cut(s)	321
MunI	CAATTG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	56, 308
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	1 cut(s)	192
NsiI	ATGCAT	1 cut(s)	190
NspI	RCATGY	1 cut(s)	192
PaeI	GCATGC	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	94
PflMI	CCANNNNNTGG	1 cut(s)	298
PkrI	GCNGC	1 cut(s)	258
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	100
RsaI	GTAC	2 cut(s)	32, 140
RsaNI	GTAC	2 cut(s)	31, 139
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	100
ScaI	AGTACT	1 cut(s)	32
SchI	GAGTC	1 cut(s)	85
SetI	ASST	4 cut(s)	43, 131, 321, 362
SfaNI	GCATC	2 cut(s)	154, 273
SfcI	CTRYAG	1 cut(s)	368
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	3 cut(s)	134, 168, 176
SspMI	CTAG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	8
TasI	AATT	3 cut(s)	134, 168, 176
TatI	WGTACW	2 cut(s)	30, 138
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	1 cut(s)	345
TseI	GCWGC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	342
TspGWI	ACGGA	1 cut(s)	14
TspRI	CASTG	1 cut(s)	345
Van91I	CCANNNNNTGG	1 cut(s)	298
XagI	CCTNNNNNAGG	2 cut(s)	270, 292
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	1 cut(s)	69
ZrmI	AGTACT	1 cut(s)	32
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.