Inner membrane component of T3SS, cytoplasmic domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G21530 |
| fragaria_vesca | FvH4_3g27180 FvH4_3g27180 FvH4_3g27180 |
| malus_domestica | MD11G1181300.v1.1 |
| prunus_persica | Prupe.6G154100_v2.0.a1 |
| pyrus_communis | pycom11g15640 |
| rosa_chinensis | RchiOBHm_Chr5g0049851 |
| rosa_laevigata | RLG00000034657 |
| rosa_multiflora | Rmu_sc0001991.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00031920 |
| rosa_rugosa | Rorug05G0253000 Rorug05G0253100 |
| rosa_samantha | Rh5AG328200 Rh5BG338700 Rh5CG363900 Rh5DG351100 |
| rosa_wichuraiana | Rw5G030990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 358 |
| AclWI | GGATC | 2 cut(s) | 176, 538 |
| AcoI | YGGCCR | 1 cut(s) | 355 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 255 |
| AgsI | TTSAA | 3 cut(s) | 304, 311, 329 |
| AjnI | CCWGG | 1 cut(s) | 526 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 461, 493 |
| AluBI | AGCT | 1 cut(s) | 374 |
| AluI | AGCT | 1 cut(s) | 374 |
| Alw21I | GWGCWC | 1 cut(s) | 122 |
| Alw26I | GTCTC | 1 cut(s) | 493 |
| AlwI | GGATC | 2 cut(s) | 176, 538 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 404 |
| AoxI | GGCC | 2 cut(s) | 202, 355 |
| ApeKI | GCWGC | 1 cut(s) | 181 |
| AseI | ATTAAT | 1 cut(s) | 132 |
| AspS9I | GGNCC | 1 cut(s) | 203 |
| AsuC2I | CCSGG | 1 cut(s) | 504 |
| AsuHPI | GGTGA | 3 cut(s) | 287, 358, 516 |
| AsuII | TTCGAA | 1 cut(s) | 424 |
| Bbv12I | GWGCWC | 1 cut(s) | 122 |
| BbvI | GCAGC | 1 cut(s) | 193 |
| BccI | CCATC | 3 cut(s) | 249, 272, 428 |
| BceAI | ACGGC | 2 cut(s) | 146, 509 |
| BciT130I | CCWGG | 1 cut(s) | 528 |
| BcnI | CCSGG | 1 cut(s) | 504 |
| BcoDI | GTCTC | 1 cut(s) | 493 |
| BfmI | CTRYAG | 1 cut(s) | 237 |
| BisI | GCNGC | 2 cut(s) | 182, 358 |
| BlsI | GCNGC | 2 cut(s) | 183, 359 |
| Bme1390I | CCNGG | 2 cut(s) | 504, 528 |
| BmgT120I | GGNCC | 1 cut(s) | 203 |
| BmiI | GGNNCC | 3 cut(s) | 205, 267, 440 |
| BmrFI | CCNGG | 2 cut(s) | 504, 528 |
| BmsI | GCATC | 1 cut(s) | 47 |
| BpmI | CTGGAG | 1 cut(s) | 284 |
| Bpu14I | TTCGAA | 1 cut(s) | 424 |
| BpuMI | CCSGG | 1 cut(s) | 504 |
| BsaI | GGTCTC | 1 cut(s) | 493 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 214, 244 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 255 |
| Bse1I | ACTGG | 1 cut(s) | 389 |
| BseBI | CCWGG | 1 cut(s) | 528 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 255 |
| BseMII | CTCAG | 2 cut(s) | 357, 488 |
| BseNI | ACTGG | 1 cut(s) | 389 |
| BseRI | GAGGAG | 4 cut(s) | 33, 64, 67, 222 |
| BseXI | GCAGC | 1 cut(s) | 193 |
| BsgI | GTGCAG | 1 cut(s) | 87 |
| BshFI | GGCC | 2 cut(s) | 204, 357 |
| BsiHKAI | GWGCWC | 1 cut(s) | 122 |
| BsiSI | CCGG | 1 cut(s) | 504 |
| BslFI | GGGAC | 2 cut(s) | 487, 541 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 255 |
| BsmAI | GTCTC | 1 cut(s) | 493 |
| BsmFI | GGGAC | 2 cut(s) | 487, 541 |
| BsmI | GAATGC | 1 cut(s) | 420 |
| BsnI | GGCC | 2 cut(s) | 204, 357 |
| Bso31I | GGTCTC | 1 cut(s) | 493 |
| Bsp119I | TTCGAA | 1 cut(s) | 424 |
| Bsp1286I | GDGCHC | 1 cut(s) | 122 |
| Bsp143I | GATC | 2 cut(s) | 168, 530 |
| BspACI | CCGC | 1 cut(s) | 358 |
| BspANI | GGCC | 2 cut(s) | 204, 357 |
| BspCNI | CTCAG | 2 cut(s) | 358, 489 |
| BspLI | GGNNCC | 3 cut(s) | 205, 267, 440 |
| BspPI | GGATC | 2 cut(s) | 176, 538 |
| BspT104I | TTCGAA | 1 cut(s) | 424 |
| BspTNI | GGTCTC | 1 cut(s) | 493 |
| BsrI | ACTGG | 1 cut(s) | 389 |
| BssMI | GATC | 2 cut(s) | 168, 530 |
| Bst2UI | CCWGG | 1 cut(s) | 528 |
| Bst4CI | ACNGT | 2 cut(s) | 352, 400 |
| Bst6I | CTCTTC | 1 cut(s) | 85 |
| BstBI | TTCGAA | 1 cut(s) | 424 |
| BstC8I | GCNNGC | 2 cut(s) | 414, 418 |
| BstDEI | CTNAG | 2 cut(s) | 366, 497 |
| BstKTI | GATC | 2 cut(s) | 171, 533 |
| BstMAI | GTCTC | 1 cut(s) | 493 |
| BstMBI | GATC | 2 cut(s) | 168, 530 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 265 |
| BstNI | CCWGG | 1 cut(s) | 528 |
| BstNSI | RCATGY | 1 cut(s) | 416 |
| BstSCI | CCNGG | 2 cut(s) | 502, 526 |
| BstSFI | CTRYAG | 1 cut(s) | 237 |
| BstV1I | GCAGC | 1 cut(s) | 193 |
| BstX2I | RGATCY | 1 cut(s) | 530 |
| BstYI | RGATCY | 1 cut(s) | 530 |
| BsuRI | GGCC | 2 cut(s) | 204, 357 |
| BtsIMutI | CAGTG | 1 cut(s) | 122 |
| Cac8I | GCNNGC | 2 cut(s) | 414, 418 |
| CaiI | CAGNNNCTG | 1 cut(s) | 404 |
| Cfr13I | GGNCC | 1 cut(s) | 203 |
| CviAII | CATG | 1 cut(s) | 413 |
| DdeI | CTNAG | 2 cut(s) | 366, 497 |
| DpnI | GATC | 2 cut(s) | 170, 532 |
| DpnII | GATC | 2 cut(s) | 168, 530 |
| EaeI | YGGCCR | 1 cut(s) | 355 |
| Eam1104I | CTCTTC | 1 cut(s) | 85 |
| EarI | CTCTTC | 1 cut(s) | 85 |
| Eco31I | GGTCTC | 1 cut(s) | 493 |
| EcoRII | CCWGG | 1 cut(s) | 526 |
| EcoT22I | ATGCAT | 1 cut(s) | 325 |
| FaeI | CATG | 1 cut(s) | 416 |
| FaiI | YATR | 8 cut(s) | 194, 209, 211, 294, 414, 609, 611, 613 |
| FaqI | GGGAC | 2 cut(s) | 487, 541 |
| FatI | CATG | 1 cut(s) | 412 |
| FauNDI | CATATG | 1 cut(s) | 209 |
| Fnu4HI | GCNGC | 2 cut(s) | 182, 358 |
| Fsp4HI | GCNGC | 2 cut(s) | 182, 358 |
| GluI | GCNGC | 2 cut(s) | 182, 358 |
| GsuI | CTGGAG | 1 cut(s) | 284 |
| HaeIII | GGCC | 2 cut(s) | 204, 357 |
| HapII | CCGG | 1 cut(s) | 504 |
| Hin1II | CATG | 1 cut(s) | 416 |
| HinfI | GANTC | 1 cut(s) | 385 |
| HpaII | CCGG | 1 cut(s) | 504 |
| HphI | GGTGA | 3 cut(s) | 287, 358, 516 |
| Hpy188I | TCNGA | 1 cut(s) | 250 |
| Hpy188III | TCNNGA | 3 cut(s) | 166, 263, 365 |
| HpyAV | CCTTC | 1 cut(s) | 371 |
| HpyCH4III | ACNGT | 2 cut(s) | 352, 400 |
| HpyCH4V | TGCA | 5 cut(s) | 38, 104, 323, 395, 412 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 265 |
| HpyF3I | CTNAG | 2 cut(s) | 366, 497 |
| Hsp92II | CATG | 1 cut(s) | 416 |
| Kzo9I | GATC | 2 cut(s) | 168, 530 |
| LmnI | GCTCC | 2 cut(s) | 125, 265 |
| Lsp1109I | GCAGC | 1 cut(s) | 193 |
| LweI | GCATC | 1 cut(s) | 47 |
| MaeIII | GTNAC | 3 cut(s) | 346, 448, 538 |
| MalI | GATC | 2 cut(s) | 170, 532 |
| MboI | GATC | 2 cut(s) | 168, 530 |
| MboII | GAAGA | 1 cut(s) | 72 |
| MflI | RGATCY | 1 cut(s) | 530 |
| MhlI | GDGCHC | 1 cut(s) | 122 |
| MluCI | AATT | 2 cut(s) | 61, 330 |
| MmeI | TCCRAC | 1 cut(s) | 147 |
| MnlI | CCTC | 7 cut(s) | 54, 82, 85, 88, 226, 243, 452 |
| Mph1103I | ATGCAT | 1 cut(s) | 325 |
| MseI | TTAA | 1 cut(s) | 132 |
| MspI | CCGG | 1 cut(s) | 504 |
| MspR9I | CCNGG | 2 cut(s) | 504, 528 |
| Mva1269I | GAATGC | 1 cut(s) | 420 |
| MvaI | CCWGG | 1 cut(s) | 528 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 265 |
| NciI | CCSGG | 1 cut(s) | 504 |
| NdeI | CATATG | 1 cut(s) | 209 |
| NdeII | GATC | 2 cut(s) | 168, 530 |
| NlaIII | CATG | 1 cut(s) | 416 |
| NlaIV | GGNNCC | 3 cut(s) | 205, 267, 440 |
| NmuCI | GTSAC | 1 cut(s) | 346 |
| NsiI | ATGCAT | 1 cut(s) | 325 |
| NspI | RCATGY | 1 cut(s) | 416 |
| NspV | TTCGAA | 1 cut(s) | 424 |
| PaeI | GCATGC | 1 cut(s) | 416 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 52 |
| PctI | GAATGC | 1 cut(s) | 420 |
| PfeI | GAWTC | 1 cut(s) | 385 |
| PkrI | GCNGC | 2 cut(s) | 183, 359 |
| PshBI | ATTAAT | 1 cut(s) | 132 |
| Psp6I | CCWGG | 1 cut(s) | 526 |
| PspGI | CCWGG | 1 cut(s) | 526 |
| PspN4I | GGNNCC | 3 cut(s) | 205, 267, 440 |
| PspPI | GGNCC | 1 cut(s) | 203 |
| PstNI | CAGNNNCTG | 1 cut(s) | 404 |
| PsuI | RGATCY | 1 cut(s) | 530 |
| SaqAI | TTAA | 1 cut(s) | 132 |
| SatI | GCNGC | 2 cut(s) | 182, 358 |
| Sau3AI | GATC | 2 cut(s) | 168, 530 |
| Sau96I | GGNCC | 1 cut(s) | 203 |
| ScrFI | CCNGG | 2 cut(s) | 504, 528 |
| SduI | GDGCHC | 1 cut(s) | 122 |
| SetI | ASST | 6 cut(s) | 112, 309, 376, 444, 521, 529 |
| SfaNI | GCATC | 1 cut(s) | 47 |
| SfcI | CTRYAG | 1 cut(s) | 237 |
| SfuI | TTCGAA | 1 cut(s) | 424 |
| SphI | GCATGC | 1 cut(s) | 416 |
| Sse9I | AATT | 2 cut(s) | 61, 330 |
| SsiI | CCGC | 1 cut(s) | 358 |
| StyD4I | CCNGG | 2 cut(s) | 502, 526 |
| TaaI | ACNGT | 2 cut(s) | 352, 400 |
| TaqI | TCGA | 1 cut(s) | 424 |
| TasI | AATT | 2 cut(s) | 61, 330 |
| TauI | GCSGC | 1 cut(s) | 360 |
| TfiI | GAWTC | 1 cut(s) | 385 |
| Tru1I | TTAA | 1 cut(s) | 132 |
| Tru9I | TTAA | 1 cut(s) | 132 |
| TscAI | CASTG | 1 cut(s) | 122 |
| TseFI | GTSAC | 1 cut(s) | 346 |
| TseI | GCWGC | 1 cut(s) | 181 |
| Tsp45I | GTSAC | 1 cut(s) | 346 |
| TspDTI | ATGAA | 1 cut(s) | 469 |
| TspRI | CASTG | 1 cut(s) | 122 |
| VspI | ATTAAT | 1 cut(s) | 132 |
| XceI | RCATGY | 1 cut(s) | 416 |
| Zsp2I | ATGCAT | 1 cut(s) | 325 |