Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0013459

Physical Location & Seq

Genomic Coordinates Forward (+)

49680393 .. 49684657

Gene Structure 4265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG328200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAAATAACAGCCCACTCTCTTTCCCATTTCTCTGCATCTCCTCGCTTGTTTCGTTCCAATTCCAAAGCCTCCTCCTCTTCTCTTGTTGCTTCTACTACTGCACTTCCTTTTCAGTGCTCCAACAACATTCTTACACGACAGCCCCAAGTCCAAGCCGTCAGGATCAAACTGAAGCAGCAACGAACCATAGGCGTTGGCCCCATATGTGCCTCTAACACACAAACTCCTCCTACAGATGTTTCCGAAAGATGGCTTCTGGAGCCTGTGGGTGATGGAGATACAAGGCATATTGGTTTCAAGGTTCAAATGCCAAATGCATTTGAAATTGCTTCTAATGTGGTGACTGTTGGCCGCCTTCCTGAGAAAGCTGATTTAGTGATTCCAGTTGCAACAGTATCTGGTTTGCATGCTCGCATTCGAAAGACAGATGGGAACCTCTTGGTAACAGATTTGGACAGCACCAATGGGACATTCATTGATGACCAACGGCTGAGACCCGGAGTTGTTGCCACCTTATCACCTGGATCTTGTGTTACATTTGGAGATGAACATTTGGCTGTGTTTCGCGTCTCAAAGTTAGATAATGTAGAAGCTGCAAGCAATCCAGGTCCCTCTGAAGATAAAGTAGAGACTGTCATCCCTGAAGAAATCCCTACTGAAAACAGTAAAACAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

226

Amino Acids

24.31

Weight (kDa)

6.21

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yop-YscD_cpl	PF16697	107 - 188	5.1e-09	Inner membrane component of T3SS, cytoplasmic domain
FHA	PF00498	115 - 182	2.5e-15	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21530
fragaria_vesca	FvH4_3g27180 FvH4_3g27180 FvH4_3g27180
malus_domestica	MD11G1181300.v1.1
prunus_persica	Prupe.6G154100_v2.0.a1
pyrus_communis	pycom11g15640
rosa_chinensis	RchiOBHm_Chr5g0049851
rosa_laevigata	RLG00000034657
rosa_multiflora	Rmu_sc0001991.1_g000006
rosa_roxburghii	Rroxscaffold_1G00031920
rosa_rugosa	Rorug05G0253000 Rorug05G0253100
rosa_samantha	Rh5AG328200 Rh5BG338700 Rh5CG363900 Rh5DG351100
rosa_wichuraiana	Rw5G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	570
AciI	CCGC	1 cut(s)	355
AclWI	GGATC	2 cut(s)	173, 535
AcoI	YGGCCR	1 cut(s)	352
AcuI	CTGAAG	3 cut(s)	194, 639, 666
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	3 cut(s)	301, 308, 326
AjnI	CCWGG	2 cut(s)	523, 607
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	2 cut(s)	371, 596
AluI	AGCT	2 cut(s)	371, 596
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	3 cut(s)	490, 577, 626
AlwI	GGATC	2 cut(s)	173, 535
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	2 cut(s)	199, 352
ApeKI	GCWGC	2 cut(s)	178, 596
AspS9I	GGNCC	2 cut(s)	200, 611
AsuC2I	CCSGG	1 cut(s)	501
AsuHPI	GGTGA	3 cut(s)	284, 355, 513
AsuII	TTCGAA	1 cut(s)	421
AvaII	GGWCC	1 cut(s)	611
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	190, 583
BccI	CCATC	3 cut(s)	246, 269, 425
BceAI	ACGGC	2 cut(s)	143, 506
BciT130I	CCWGG	2 cut(s)	525, 609
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	3 cut(s)	490, 577, 626
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	3 cut(s)	179, 355, 597
BlsI	GCNGC	3 cut(s)	180, 356, 598
Bme1390I	CCNGG	3 cut(s)	501, 525, 609
Bme18I	GGWCC	1 cut(s)	611
BmgT120I	GGNCC	2 cut(s)	200, 611
BmiI	GGNNCC	4 cut(s)	202, 264, 437, 613
BmrFI	CCNGG	3 cut(s)	501, 525, 609
BmsI	GCATC	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	281
Bpu14I	TTCGAA	1 cut(s)	421
BpuMI	CCSGG	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	490
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	386
BseBI	CCWGG	2 cut(s)	525, 609
BseGI	GGATG	1 cut(s)	639
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	2 cut(s)	354, 485
BseNI	ACTGG	1 cut(s)	386
BseRI	GAGGAG	4 cut(s)	33, 64, 67, 219
BseXI	GCAGC	2 cut(s)	190, 583
BsgI	GTGCAG	1 cut(s)	87
Bsh1236I	CGCG	1 cut(s)	570
BshFI	GGCC	2 cut(s)	201, 354
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	501
BslFI	GGGAC	2 cut(s)	484, 597
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	3 cut(s)	490, 577, 626
BsmBI	CGTCTC	1 cut(s)	577
BsmFI	GGGAC	2 cut(s)	484, 597
BsmI	GAATGC	1 cut(s)	417
BsnI	GGCC	2 cut(s)	201, 354
Bso31I	GGTCTC	1 cut(s)	490
Bsp119I	TTCGAA	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	165, 527
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	2 cut(s)	201, 354
BspCNI	CTCAG	2 cut(s)	355, 486
BspFNI	CGCG	1 cut(s)	570
BspLI	GGNNCC	4 cut(s)	202, 264, 437, 613
BspPI	GGATC	2 cut(s)	173, 535
BspT104I	TTCGAA	1 cut(s)	421
BspTNI	GGTCTC	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	386
BssMI	GATC	2 cut(s)	165, 527
Bst2UI	CCWGG	2 cut(s)	525, 609
Bst4CI	ACNGT	4 cut(s)	349, 397, 637, 668
Bst6I	CTCTTC	1 cut(s)	85
BstBI	TTCGAA	1 cut(s)	421
BstC8I	GCNNGC	3 cut(s)	411, 415, 601
BstDEI	CTNAG	2 cut(s)	363, 494
BstF5I	GGATG	1 cut(s)	639
BstFNI	CGCG	1 cut(s)	570
BstKTI	GATC	2 cut(s)	168, 530
BstMAI	GTCTC	3 cut(s)	490, 577, 626
BstMBI	GATC	2 cut(s)	165, 527
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	2 cut(s)	525, 609
BstNSI	RCATGY	1 cut(s)	413
BstSCI	CCNGG	3 cut(s)	499, 523, 607
BstSFI	CTRYAG	1 cut(s)	234
BstUI	CGCG	1 cut(s)	570
BstV1I	GCAGC	2 cut(s)	190, 583
BstX2I	RGATCY	1 cut(s)	527
BstYI	RGATCY	1 cut(s)	527
BsuRI	GGCC	2 cut(s)	201, 354
BtsCI	GGATG	1 cut(s)	639
BtsIMutI	CAGTG	1 cut(s)	122
Cac8I	GCNNGC	3 cut(s)	411, 415, 601
CaiI	CAGNNNCTG	1 cut(s)	401
Cfr13I	GGNCC	2 cut(s)	200, 611
CseI	GACGC	1 cut(s)	559
CviAII	CATG	1 cut(s)	410
DdeI	CTNAG	2 cut(s)	363, 494
DpnI	GATC	2 cut(s)	167, 529
DpnII	GATC	2 cut(s)	165, 527
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	490
Eco47I	GGWCC	1 cut(s)	611
Eco57I	CTGAAG	3 cut(s)	194, 639, 666
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRII	CCWGG	2 cut(s)	523, 607
EcoT22I	ATGCAT	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	577
FaeI	CATG	1 cut(s)	413
FaiI	YATR	6 cut(s)	191, 206, 208, 291, 411, 679
FaqI	GGGAC	2 cut(s)	484, 597
FatI	CATG	1 cut(s)	409
FauNDI	CATATG	1 cut(s)	206
Fnu4HI	GCNGC	3 cut(s)	179, 355, 597
FokI	GGATG	1 cut(s)	626
Fsp4HI	GCNGC	3 cut(s)	179, 355, 597
GluI	GCNGC	3 cut(s)	179, 355, 597
GsuI	CTGGAG	1 cut(s)	281
HaeIII	GGCC	2 cut(s)	201, 354
HapII	CCGG	1 cut(s)	501
HgaI	GACGC	1 cut(s)	559
Hin1II	CATG	1 cut(s)	413
HinfI	GANTC	1 cut(s)	382
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	3 cut(s)	284, 355, 513
Hpy188I	TCNGA	2 cut(s)	247, 619
Hpy188III	TCNNGA	3 cut(s)	163, 260, 362
HpyAV	CCTTC	1 cut(s)	368
HpyCH4III	ACNGT	4 cut(s)	349, 397, 637, 668
HpyCH4V	TGCA	6 cut(s)	38, 104, 320, 392, 409, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	2 cut(s)	363, 494
Hsp92II	CATG	1 cut(s)	413
Kzo9I	GATC	2 cut(s)	165, 527
LmnI	GCTCC	2 cut(s)	125, 262
Lsp1109I	GCAGC	2 cut(s)	190, 583
LweI	GCATC	1 cut(s)	47
MaeIII	GTNAC	3 cut(s)	343, 445, 535
MalI	GATC	2 cut(s)	167, 529
MboI	GATC	2 cut(s)	165, 527
MboII	GAAGA	3 cut(s)	72, 632, 659
MflI	RGATCY	1 cut(s)	527
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	2 cut(s)	61, 327
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	8 cut(s)	54, 82, 85, 88, 223, 240, 449, 625
Mph1103I	ATGCAT	1 cut(s)	322
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	3 cut(s)	501, 525, 609
Mva1269I	GAATGC	1 cut(s)	417
MvaI	CCWGG	2 cut(s)	525, 609
MvnI	CGCG	1 cut(s)	570
MwoI	GCNNNNNNNGC	1 cut(s)	262
NciI	CCSGG	1 cut(s)	501
NdeI	CATATG	1 cut(s)	206
NdeII	GATC	2 cut(s)	165, 527
NlaIII	CATG	1 cut(s)	413
NlaIV	GGNNCC	4 cut(s)	202, 264, 437, 613
NmuCI	GTSAC	1 cut(s)	343
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	1 cut(s)	413
NspV	TTCGAA	1 cut(s)	421
PaeI	GCATGC	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	1 cut(s)	52
PctI	GAATGC	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	382
PkrI	GCNGC	3 cut(s)	180, 356, 598
PpuMI	RGGWCCY	1 cut(s)	611
Psp5II	RGGWCCY	1 cut(s)	611
Psp6I	CCWGG	2 cut(s)	523, 607
PspGI	CCWGG	2 cut(s)	523, 607
PspN4I	GGNNCC	4 cut(s)	202, 264, 437, 613
PspPI	GGNCC	2 cut(s)	200, 611
PspPPI	RGGWCCY	1 cut(s)	611
PstNI	CAGNNNCTG	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	527
SatI	GCNGC	3 cut(s)	179, 355, 597
Sau3AI	GATC	2 cut(s)	165, 527
Sau96I	GGNCC	2 cut(s)	200, 611
ScrFI	CCNGG	3 cut(s)	501, 525, 609
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	7 cut(s)	306, 373, 441, 518, 526, 598, 613
SfaNI	GCATC	1 cut(s)	47
SfcI	CTRYAG	1 cut(s)	234
SfuI	TTCGAA	1 cut(s)	421
SinI	GGWCC	1 cut(s)	611
SphI	GCATGC	1 cut(s)	413
Sse9I	AATT	2 cut(s)	61, 327
SsiI	CCGC	1 cut(s)	355
StyD4I	CCNGG	3 cut(s)	499, 523, 607
TaaI	ACNGT	4 cut(s)	349, 397, 637, 668
TaqI	TCGA	1 cut(s)	421
TasI	AATT	2 cut(s)	61, 327
TauI	GCSGC	1 cut(s)	357
TfiI	GAWTC	1 cut(s)	382
TscAI	CASTG	1 cut(s)	122
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	2 cut(s)	178, 596
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	2 cut(s)	466, 564
TspRI	CASTG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	611
XceI	RCATGY	1 cut(s)	413
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.