Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016797

Physical Location & Seq

Genomic Coordinates Reverse (-)

20438254 .. 20439111

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27322.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGATAGAGCTGCGATCAAGTTCAAAGTTCAGGGGAGTAGAGGCTGAGATAAATGATGACATTGAAGACTATGAAGATGACTCAAAACAATACCGGTTCCCTAGAGGCGGCTCAAAATATAGGGGAGTGCCATTGCATAAGTGTGGGACATGGGAGACTCGGATGGGCCAATTTTTAGGTAAAAAGTTTGTTATTGATATCCCAGCGACAACTGCTGCAAGCTCTGGTGAGTACTTTACAGTTCTCCACTTTGTGCTATTGGGTTATTTCTATTATCTGAATATGATTTGTAACGAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010073 GO:0010093 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

101

Amino Acids

11.58

Weight (kDa)

5.63

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016797)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27322 FvH4_3g27322 FvH4_4g11030 FvH4_4g11060 FvH4_4g11063 FvH4_4g11430 FvH4_5g27997 FvH4_5g28160 FvH4_5g28220 FvH4_5g28371 FvH4_6g25551 FvH4_6g25850 FvH4_c17g00081 FvH4_c17g00081

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	108
AdeI	CACNNNGTG	1 cut(s)	253
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgeI	ACCGGT	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	24, 65
AluBI	AGCT	2 cut(s)	10, 222
AluI	AGCT	2 cut(s)	10, 222
Alw26I	GTCTC	1 cut(s)	149
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	2 cut(s)	10, 215
AsiGI	ACCGGT	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	102
BisI	GCNGC	3 cut(s)	11, 109, 216
BlsI	GCNGC	3 cut(s)	12, 110, 217
BmcAI	AGTACT	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse118I	RCCGGY	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	131
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	202
BseYI	CCCAGC	1 cut(s)	202
BshFI	GGCC	1 cut(s)	168
BshTI	ACCGGT	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	14
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	93
BssMI	GATC	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	168
BstKTI	GATC	1 cut(s)	17
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	232
CspAI	ACCGGT	1 cut(s)	93
CviAII	CATG	1 cut(s)	150
CviJI	RGCY	5 cut(s)	10, 44, 111, 168, 222
CviKI_1	RGCY	5 cut(s)	10, 44, 111, 168, 222
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
DraIII	CACNNNGTG	1 cut(s)	253
Eco32I	GATATC	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	199
FaeI	CATG	1 cut(s)	153
FaiI	YATR	5 cut(s)	72, 120, 138, 151, 284
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	1 cut(s)	149
Fnu4HI	GCNGC	3 cut(s)	11, 109, 216
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	3 cut(s)	11, 109, 216
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	3 cut(s)	11, 109, 216
GsaI	CCCAGC	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	1 cut(s)	94
Hin1II	CATG	1 cut(s)	153
HinfI	GANTC	2 cut(s)	80, 157
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	1 cut(s)	239
Hpy188I	TCNGA	2 cut(s)	162, 279
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	2 cut(s)	136, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	14
LpnPI	CCDG	4 cut(s)	16, 107, 210, 216
Lsp1109I	GCAGC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	2 cut(s)	77, 86
MluCI	AATT	1 cut(s)	170
MlyI	GAGTC	2 cut(s)	74, 151
MnlI	CCTC	2 cut(s)	34, 98
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	1 cut(s)	153
NlaIV	GGNNCC	1 cut(s)	98
PinAI	ACCGGT	1 cut(s)	93
PkrI	GCNGC	3 cut(s)	12, 110, 217
PleI	GAGTC	2 cut(s)	74, 151
PpsI	GAGTC	2 cut(s)	74, 151
PspFI	CCCAGC	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	166
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	141
SatI	GCNGC	3 cut(s)	11, 109, 216
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	166
ScaI	AGTACT	1 cut(s)	233
SchI	GAGTC	2 cut(s)	74, 151
SetI	ASST	3 cut(s)	12, 181, 224
SgeI	CNNG	9 cut(s)	30, 43, 106, 114, 162, 171, 215, 231, 237
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	1 cut(s)	108
SspMI	CTAG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	241
TasI	AATT	1 cut(s)	170
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	1 cut(s)	111
TseI	GCWGC	2 cut(s)	10, 215
TspDTI	ATGAA	1 cut(s)	87
XspI	CTAG	1 cut(s)	102
ZrmI	AGTACT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.