Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016797

Physical Location & Seq

Genomic Coordinates Forward (+)

19480855 .. 19483057

Gene Structure 2203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g25551.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTCATCCAGCAAGGCTTGTGCGGCATGGCTGGGAGGATGGTCACTGATTTTCGATTTACCAAAAGCAATCACAATTGAAGAGATAATTGGAGCTGGCTGGAAACTAGCTATGGAAACTAAAGGAGTATGTTTTGAGTTAGTGTCTGTTGATATTAATTTTTCCTCAAGATTGACGACATCAATTGTTCCCGTAGCGTATGACAGAGCGGCGATCAAGTTCAGGGGAGTAGAGGGTGACATAAATTTTGACATGGAAGACTATGAAGACTATGACATGGAGTACGTTTATTTGGGATTATTTGATGCTGACAACGACGCAGAAGGGCCTATGACAAAGCTGCAATCAAGTATAATGGGAAATAATCTGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010073 GO:0010093 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

125

Amino Acids

13.71

Weight (kDa)

4.16

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016797)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27322 FvH4_3g27322 FvH4_4g11030 FvH4_4g11060 FvH4_4g11063 FvH4_4g11430 FvH4_5g27997 FvH4_5g28160 FvH4_5g28220 FvH4_5g28371 FvH4_6g25551 FvH4_6g25850 FvH4_c17g00081 FvH4_c17g00081

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	209
AciI	CCGC	2 cut(s)	23, 209
AcsI	RAATTY	1 cut(s)	244
AfaI	GTAC	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	80
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	3 cut(s)	95, 110, 340
AluI	AGCT	3 cut(s)	95, 110, 340
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	1 cut(s)	340
ApoI	RAATTY	1 cut(s)	244
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AseI	ATTAAT	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	248
BbsI	GAAGAC	2 cut(s)	264, 273
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	1 cut(s)	33
BfaI	CTAG	1 cut(s)	107
BisI	GCNGC	3 cut(s)	24, 210, 341
BlsI	GCNGC	3 cut(s)	25, 211, 342
BmgT120I	GGNCC	1 cut(s)	326
BmsI	GCATC	1 cut(s)	295
BpiI	GAAGAC	2 cut(s)	264, 273
BpuEI	CTTGAG	1 cut(s)	151
BseGI	GGATG	2 cut(s)	5, 44
BseXI	GCAGC	1 cut(s)	327
BseYI	CCCAGC	1 cut(s)	31
BshFI	GGCC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	213
BspACI	CCGC	2 cut(s)	23, 209
BspANI	GGCC	1 cut(s)	328
BsrBI	CCGCTC	1 cut(s)	209
BssMI	GATC	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	97
BstF5I	GGATG	2 cut(s)	5, 44
BstKTI	GATC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	327
BstV2I	GAAGAC	2 cut(s)	264, 273
BsuRI	GGCC	1 cut(s)	328
BtsCI	GGATG	2 cut(s)	5, 44
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	326
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	3 cut(s)	27, 253, 277
CviJI	RGCY	7 cut(s)	17, 31, 95, 99, 110, 328, 340
CviKI_1	RGCY	7 cut(s)	17, 31, 95, 99, 110, 328, 340
CviQI	GTAC	1 cut(s)	283
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	326
FaeI	CATG	3 cut(s)	30, 256, 280
FatI	CATG	3 cut(s)	26, 252, 276
Fnu4HI	GCNGC	3 cut(s)	24, 210, 341
FokI	GGATG	1 cut(s)	51
Fsp4HI	GCNGC	3 cut(s)	24, 210, 341
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	3 cut(s)	24, 210, 341
GsaI	CCCAGC	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	328
HgaI	GACGC	1 cut(s)	326
Hin1II	CATG	3 cut(s)	30, 256, 280
HphI	GGTGA	1 cut(s)	248
Hpy188III	TCNNGA	1 cut(s)	168
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	1 cut(s)	317
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	1 cut(s)	343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	30, 256, 280
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	5 cut(s)	17, 22, 81, 85, 208
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	2 cut(s)	42, 236
MalI	GATC	1 cut(s)	215
MbiI	CCGCTC	1 cut(s)	209
MboI	GATC	1 cut(s)	213
MboII	GAAGA	3 cut(s)	92, 269, 278
MfeI	CAATTG	2 cut(s)	75, 183
MluCI	AATT	5 cut(s)	75, 87, 157, 183, 244
MnlI	CCTC	3 cut(s)	29, 175, 226
MseI	TTAA	1 cut(s)	156
MunI	CAATTG	2 cut(s)	75, 183
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	3 cut(s)	30, 256, 280
NmuCI	GTSAC	2 cut(s)	42, 236
PkrI	GCNGC	3 cut(s)	25, 211, 342
PshBI	ATTAAT	1 cut(s)	156
PspFI	CCCAGC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	326
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	24, 210, 341
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	1 cut(s)	326
SetI	ASST	4 cut(s)	97, 112, 288, 342
SfaNI	GCATC	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	5 cut(s)	75, 87, 157, 183, 244
SsiI	CCGC	2 cut(s)	23, 209
SspMI	CTAG	1 cut(s)	107
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	54
TasI	AATT	5 cut(s)	75, 87, 157, 183, 244
TauI	GCSGC	2 cut(s)	26, 212
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	2 cut(s)	42, 236
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	2 cut(s)	42, 236
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	51
VspI	ATTAAT	1 cut(s)	156
XapI	RAATTY	1 cut(s)	244
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.