FvH4_4g11430

histone serine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016797
Physical Location & Seq
Forward (+)
15171985 .. 15172925
941 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11430.t1

Sequence Viewer

Length: 342 bp
ATGGATCTTTCCAACTGCCGATGTTTAACCATGACCCCGGACTTCAGCGCGGTCCCAAATCTTGAGACATTGATCCTTGAAGGTTCTACAGAGTTATTAGAGGTTCACTCAAAGTCCTCTTCAAGAACCAGTTGCAACAATCTTCAGCTTCGCCCGGAAGTTGAAATACAAAGTCCTCTTCGCCATCCCAATATTCTACGTCTTTATGGCTACTTTTATGATCAGGGTGAACTCAAGATAGCAGATTTGGGGTGGTCAGTGCATACATTCAATCGCAGTCGGACCATGTGTGGCACTCTTGATTACCTCCCTGCTGAGATGGAGCCGATGAGATATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Pkinase

Protein Analysis

114

Amino Acids

12.97

Weight (kDa)

5.26

Isoelectric Point (pI)

60.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 50
AciI CCGC 1 cut(s) 50
AclWI GGATC 2 cut(s) 12, 67
AcuI CTGAAG 2 cut(s) 28, 128
AgsI TTSAA 4 cut(s) 80, 123, 164, 271
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 2 cut(s) 12, 67
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 52, 282
AsuC2I CCSGG 2 cut(s) 38, 155
AsuHPI GGTGA 1 cut(s) 239
AvaII GGWCC 2 cut(s) 52, 282
BarI GAAGNNNNNNTAC 2 cut(s) 150, 182
BccI CCATC 2 cut(s) 192, 313
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 2 cut(s) 38, 155
BcoDI GTCTC 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 87
Bme1390I CCNGG 2 cut(s) 38, 155
Bme18I GGWCC 2 cut(s) 52, 282
BmgT120I GGNCC 2 cut(s) 52, 282
BmiI GGNNCC 2 cut(s) 54, 324
BmrFI CCNGG 2 cut(s) 38, 155
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpuEI CTTGAG 2 cut(s) 83, 218
BpuMI CCSGG 2 cut(s) 38, 155
BsaJI CCNNGG 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 50
BsiSI CCGG 2 cut(s) 38, 155
BslFI GGGAC 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 38
Bsp143I GATC 3 cut(s) 4, 72, 220
BspACI CCGC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 2 cut(s) 54, 324
BspPI GGATC 2 cut(s) 12, 67
BsrI ACTGG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 3 cut(s) 4, 72, 220
Bst6I CTCTTC 2 cut(s) 124, 183
BstDEI CTNAG 1 cut(s) 315
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 1 cut(s) 50
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 3 cut(s) 7, 75, 223
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 3 cut(s) 4, 72, 220
BstSCI CCNGG 2 cut(s) 36, 153
BstSFI CTRYAG 1 cut(s) 87
BstUI CGCG 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtsCI GGATG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 264
CfoI GCGC 1 cut(s) 50
Cfr13I GGNCC 2 cut(s) 52, 282
CviAII CATG 2 cut(s) 31, 286
CviJI RGCY 3 cut(s) 148, 210, 325
CviKI_1 RGCY 3 cut(s) 148, 210, 325
DdeI CTNAG 1 cut(s) 315
DpnI GATC 3 cut(s) 6, 74, 222
DpnII GATC 3 cut(s) 4, 72, 220
Eam1104I CTCTTC 2 cut(s) 124, 183
EarI CTCTTC 2 cut(s) 124, 183
Eco32I GATATC 1 cut(s) 335
Eco47I GGWCC 2 cut(s) 52, 282
Eco57I CTGAAG 2 cut(s) 28, 128
EcoRV GATATC 1 cut(s) 335
FaeI CATG 2 cut(s) 34, 289
FaiI YATR 5 cut(s) 32, 207, 219, 264, 287
FaqI GGGAC 1 cut(s) 38
FatI CATG 2 cut(s) 30, 285
FbaI TGATCA 1 cut(s) 220
FokI GGATG 1 cut(s) 171
GlaI GCGC 1 cut(s) 49
HapII CCGG 2 cut(s) 38, 155
HhaI GCGC 1 cut(s) 50
Hin1II CATG 2 cut(s) 34, 289
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HpaII CCGG 2 cut(s) 38, 155
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 2 cut(s) 106, 230
Hpy188I TCNGA 1 cut(s) 282
Hpy188III TCNNGA 4 cut(s) 62, 123, 235, 299
Hpy8I GTNNAC 2 cut(s) 106, 230
HpyAV CCTTC 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 2 cut(s) 135, 262
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 2 cut(s) 34, 289
HspAI GCGC 1 cut(s) 48
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 3 cut(s) 4, 72, 220
LmnI GCTCC 1 cut(s) 322
LpnPI CCDG 5 cut(s) 51, 142, 168, 209, 324
MaeII ACGT 1 cut(s) 199
MalI GATC 3 cut(s) 6, 74, 222
MboI GATC 3 cut(s) 4, 72, 220
MboII GAAGA 3 cut(s) 111, 134, 170
MflI RGATCY 1 cut(s) 4
MmeI TCCRAC 2 cut(s) 36, 260
MnlI CCTC 4 cut(s) 94, 127, 186, 317
MseI TTAA 1 cut(s) 26
MspI CCGG 2 cut(s) 38, 155
MspR9I CCNGG 2 cut(s) 38, 155
MvnI CGCG 1 cut(s) 50
NciI CCSGG 2 cut(s) 38, 155
NdeII GATC 3 cut(s) 4, 72, 220
NlaIII CATG 2 cut(s) 34, 289
NlaIV GGNNCC 2 cut(s) 54, 324
PspN4I GGNNCC 2 cut(s) 54, 324
PspPI GGNCC 2 cut(s) 52, 282
PsuI RGATCY 1 cut(s) 4
SaqAI TTAA 1 cut(s) 26
Sau3AI GATC 3 cut(s) 4, 72, 220
Sau96I GGNCC 2 cut(s) 52, 282
ScrFI CCNGG 2 cut(s) 38, 155
SetI ASST 5 cut(s) 85, 105, 150, 202, 309
SfcI CTRYAG 1 cut(s) 87
SinI GGWCC 2 cut(s) 52, 282
SmlI CTYRAG 2 cut(s) 62, 233
SmoI CTYRAG 2 cut(s) 62, 233
SsiI CCGC 1 cut(s) 50
SspI AATATT 1 cut(s) 193
StyD4I CCNGG 2 cut(s) 36, 153
TaiI ACGT 1 cut(s) 202
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 1 cut(s) 264
TspRI CASTG 1 cut(s) 264
VpaK11BI GGWCC 2 cut(s) 52, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.