Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016797

Physical Location & Seq

Genomic Coordinates Reverse (-)

19799887 .. 19800951

Gene Structure 1065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g25850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTTCCTGAATGCTTCTCTGATGGCAGATTTGGCGGGTGCAAGAGTTGTGACTAAAGATAGCAATCACATAGTGGCACTCAAAGTCCTCTTCAAGAGCCAGTTGCAACAATCTCAGGTTGAGCATCAGTTTCGTCGGGAAGTTGAAATACAAAGTCATCTTCGCCATCCCAATATTCTACGTCTTTATGGCTACTTTTATGATCAGAAACGAGTTTATTTGATATTGGAATATGCCGCCAAAGGTGAACTACAAGAGGAACTCCAGAAGTGTAAATACTTTAGTGAAAGACGTGCAGCCACCTATGTTGCATCATTGGCCCCATCCCTTATATACTGTCATGGAAAGCACGTAATTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000922 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009504 GO:0009524 GO:0009987 GO:0010564 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

121

Amino Acids

14.01

Weight (kDa)

9.3

Isoelectric Point (pI)

69.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	15 - 120	3.2e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	18 - 120	2.7e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016797)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27322 FvH4_3g27322 FvH4_4g11030 FvH4_4g11060 FvH4_4g11063 FvH4_4g11430 FvH4_5g27997 FvH4_5g28160 FvH4_5g28220 FvH4_5g28371 FvH4_6g25551 FvH4_6g25850 FvH4_c17g00081 FvH4_c17g00081

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	35, 237
AdeI	CACNNNGTG	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	94, 146
AjiI	CACGTC	1 cut(s)	293
AoxI	GGCC	1 cut(s)	318
ApeKI	GCWGC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	257
BarI	GAAGNNNNNNTAC	4 cut(s)	132, 164, 260, 292
BbvI	GCAGC	1 cut(s)	308
BccI	CCATC	3 cut(s)	16, 174, 331
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BclI	TGATCA	1 cut(s)	202
BisI	GCNGC	2 cut(s)	237, 297
BlsI	GCNGC	2 cut(s)	238, 298
BmgBI	CACGTC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	321
BmsI	GCATC	2 cut(s)	133, 320
BpmI	CTGGAG	1 cut(s)	248
BsaAI	YACGTR	1 cut(s)	352
BsaBI	GATNNNNATC	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	63
BseGI	GGATG	2 cut(s)	166, 323
BseJI	GATNNNNATC	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	308
BsgI	GTGCAG	1 cut(s)	315
BshFI	GGCC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	320
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	2 cut(s)	35, 237
BspANI	GGCC	1 cut(s)	320
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	100
BssMI	GATC	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	95
BstBAI	YACGTR	1 cut(s)	352
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	166, 323
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 317
BstV1I	GCAGC	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	320
BtrI	CACGTC	1 cut(s)	293
BtsCI	GGATG	2 cut(s)	166, 323
Cfr13I	GGNCC	1 cut(s)	319
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	4 cut(s)	99, 192, 299, 320
CviKI_1	RGCY	4 cut(s)	99, 192, 299, 320
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
DraIII	CACNNNGTG	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
FaeI	CATG	1 cut(s)	344
FaiI	YATR	8 cut(s)	71, 189, 201, 234, 306, 332, 334, 342
FatI	CATG	1 cut(s)	340
FauI	CCCGC	1 cut(s)	28
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	2 cut(s)	237, 297
FokI	GGATG	2 cut(s)	153, 310
Fsp4HI	GCNGC	2 cut(s)	237, 297
GluI	GCNGC	2 cut(s)	237, 297
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	320
Hin1II	CATG	1 cut(s)	344
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	2 cut(s)	21, 207
Hpy188III	TCNNGA	4 cut(s)	7, 94, 137, 265
Hpy8I	GTNNAC	1 cut(s)	248
Hpy99I	CGWCG	1 cut(s)	138
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	3 cut(s)	181, 292, 351
HpyCH4V	TGCA	4 cut(s)	41, 106, 296, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 317
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	3 cut(s)	181, 292, 351
Hsp92II	CATG	1 cut(s)	344
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	4 cut(s)	20, 101, 113, 278
Lsp1109I	GCAGC	1 cut(s)	308
LweI	GCATC	2 cut(s)	133, 320
MaeII	ACGT	3 cut(s)	181, 292, 351
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	2 cut(s)	82, 152
MluCI	AATT	1 cut(s)	354
MnlI	CCTC	2 cut(s)	98, 250
Mva1269I	GAATGC	1 cut(s)	16
MwoI	GCNNNNNNNGC	2 cut(s)	32, 317
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	49
PctI	GAATGC	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	238, 298
Ppu21I	YACGTR	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	319
SatI	GCNGC	2 cut(s)	237, 297
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	1 cut(s)	319
SetI	ASST	6 cut(s)	120, 184, 247, 295, 305, 354
SfaNI	GCATC	2 cut(s)	133, 320
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	2 cut(s)	35, 237
SspI	AATATT	1 cut(s)	175
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	3 cut(s)	184, 295, 354
TasI	AATT	1 cut(s)	354
TauI	GCSGC	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.