Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016797

Physical Location & Seq

Genomic Coordinates Forward (+)

19249299 .. 19253114

Gene Structure 3816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27997.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGATAGAGCTGCAATTAAGTGCGATGAAGTTCAGGGGAGTAGAGGCCGACATAAATGATGACATTGAAGACTATGATGATGACTTGAAACAATCCTTCCTCTTTTTCGCCGATTCCGACTTCGACGAAGACGACGGCTCCAGGAAACGCCGCAAAGACAGAAAGGCCGACTTCACAAAGCCCGTCAGCTTCCTCTCCACCGGCGTCGTCATGCCCAACCAGGAAGCCGAGAACGATCTGAAGCAGCGAACCGGCGACATGGACCGCGCGCCTACATCAGGTTTTTCTGTGTTTTTAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

101

Amino Acids

11.43

Weight (kDa)

4.36

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP_N	PF12457	36 - 81	4.7e-08	Tuftelin interacting protein N terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016797)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27322 FvH4_3g27322 FvH4_4g11030 FvH4_4g11060 FvH4_4g11063 FvH4_4g11430 FvH4_5g27997 FvH4_5g28160 FvH4_5g28220 FvH4_5g28371 FvH4_6g25551 FvH4_6g25850 FvH4_c17g00081 FvH4_c17g00081

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	267, 269
AciI	CCGC	2 cut(s)	151, 265
AcuI	CTGAAG	1 cut(s)	260
AcyI	GRCGYC	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	68, 88
AjnI	CCWGG	2 cut(s)	140, 219
AluBI	AGCT	2 cut(s)	10, 189
AluI	AGCT	2 cut(s)	10, 189
AoxI	GGCC	2 cut(s)	45, 165
ApeKI	GCWGC	2 cut(s)	10, 244
AspLEI	GCGC	2 cut(s)	269, 271
AspS9I	GGNCC	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	262
BbsI	GAAGAC	2 cut(s)	75, 135
BbvI	GCAGC	1 cut(s)	256
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	2 cut(s)	142, 221
BisI	GCNGC	3 cut(s)	11, 151, 245
BlsI	GCNGC	3 cut(s)	12, 152, 246
Bme1390I	CCNGG	2 cut(s)	142, 221
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	142, 221
BpiI	GAAGAC	2 cut(s)	75, 135
BpmI	CTGGAG	1 cut(s)	124
BsaHI	GRCGYC	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse118I	RCCGGY	2 cut(s)	200, 251
BseBI	CCWGG	2 cut(s)	142, 221
BseLI	CCNNNNNNNGG	1 cut(s)	278
BsePI	GCGCGC	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	256
Bsh1236I	CGCG	2 cut(s)	267, 269
BshFI	GGCC	2 cut(s)	47, 167
BsiSI	CCGG	2 cut(s)	201, 252
BslI	CCNNNNNNNGG	1 cut(s)	278
BsnI	GGCC	2 cut(s)	47, 167
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	2 cut(s)	151, 265
BspANI	GGCC	2 cut(s)	47, 167
BspFNI	CGCG	2 cut(s)	267, 269
BspLI	GGNNCC	1 cut(s)	139
BsrFI	RCCGGY	2 cut(s)	200, 251
BssAI	RCCGGY	2 cut(s)	200, 251
BssHII	GCGCGC	1 cut(s)	267
BssMI	GATC	1 cut(s)	235
BssNI	GRCGYC	1 cut(s)	204
Bst2UI	CCWGG	2 cut(s)	142, 221
BstACI	GRCGYC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	269
BstENI	CCTNNNNNAGG	1 cut(s)	276
BstFNI	CGCG	2 cut(s)	267, 269
BstHHI	GCGC	2 cut(s)	269, 271
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstNI	CCWGG	2 cut(s)	142, 221
BstSCI	CCNGG	2 cut(s)	140, 219
BstUI	CGCG	2 cut(s)	267, 269
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	2 cut(s)	75, 135
BsuRI	GGCC	2 cut(s)	47, 167
BtgZI	GCGATG	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	269
CfoI	GCGC	2 cut(s)	269, 271
Cfr10I	RCCGGY	2 cut(s)	200, 251
Cfr13I	GGNCC	1 cut(s)	262
CseI	GACGC	1 cut(s)	193
CviAII	CATG	2 cut(s)	211, 259
CviJI	RGCY	7 cut(s)	10, 47, 138, 167, 181, 189, 227
CviKI_1	RGCY	7 cut(s)	10, 47, 138, 167, 181, 189, 227
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	260
EcoNI	CCTNNNNNAGG	1 cut(s)	276
EcoRII	CCWGG	2 cut(s)	140, 219
FaeI	CATG	2 cut(s)	214, 262
FaiI	YATR	4 cut(s)	53, 75, 212, 260
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FatI	CATG	2 cut(s)	210, 258
Fnu4HI	GCNGC	3 cut(s)	11, 151, 245
Fsp4HI	GCNGC	3 cut(s)	11, 151, 245
GlaI	GCGC	2 cut(s)	268, 270
GluI	GCNGC	3 cut(s)	11, 151, 245
GsuI	CTGGAG	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	47, 167
HapII	CCGG	2 cut(s)	201, 252
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	2 cut(s)	269, 271
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	214, 262
Hin6I	GCGC	2 cut(s)	267, 269
HinP1I	GCGC	2 cut(s)	267, 269
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	2 cut(s)	201, 252
Hpy188I	TCNGA	2 cut(s)	118, 240
Hpy99I	CGWCG	3 cut(s)	128, 137, 209
HpyAV	CCTTC	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	13
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	214, 262
HspAI	GCGC	2 cut(s)	267, 269
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	8 cut(s)	19, 127, 154, 206, 214, 233, 264, 265
Lsp1109I	GCAGC	1 cut(s)	256
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	2 cut(s)	80, 140
MluCI	AATT	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	3 cut(s)	37, 110, 203
MseI	TTAA	2 cut(s)	17, 296
MspI	CCGG	2 cut(s)	201, 252
MspR9I	CCNGG	2 cut(s)	142, 221
MvaI	CCWGG	2 cut(s)	142, 221
MvnI	CGCG	2 cut(s)	267, 269
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	2 cut(s)	214, 262
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	253
PauI	GCGCGC	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 129
PfeI	GAWTC	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	12, 152, 246
Psp6I	CCWGG	2 cut(s)	140, 219
PspGI	CCWGG	2 cut(s)	140, 219
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	262
PteI	GCGCGC	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	17, 296
SatI	GCNGC	3 cut(s)	11, 151, 245
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	1 cut(s)	262
ScrFI	CCNGG	2 cut(s)	142, 221
SetI	ASST	3 cut(s)	12, 191, 283
SgrAI	CRCCGGYG	1 cut(s)	200
SinI	GGWCC	1 cut(s)	262
Sse9I	AATT	1 cut(s)	14
SsiI	CCGC	2 cut(s)	151, 265
StyD4I	CCNGG	2 cut(s)	140, 219
TaqI	TCGA	1 cut(s)	123
TasI	AATT	1 cut(s)	14
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	17, 296
Tru9I	TTAA	2 cut(s)	17, 296
TseI	GCWGC	2 cut(s)	10, 244
TspDTI	ATGAA	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	262
XagI	CCTNNNNNAGG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.