Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016797

Physical Location & Seq

Genomic Coordinates Forward (+)

14716805 .. 14720935

Gene Structure 4131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGATAGAGCTGCGATCAAGTTTAAAGTTCTGGGGAGTAGAGGCTGACATAAATGATGACATTGAAGACTATGAAGATGACTCGAAACAAATTATATATGGCGTTGATAGTGCAATGTGCATTGTTCTTGATCTGTATCTATGCCTGAAACAGAGCAATCACATAGTGGCACTCAAAGTCCTCTTCAAGAACCTGTTGCAACAATCTCAGGTTGAGCATCAGCTTCGCCCGGAAGTTGAAATACAAAGTCATCTTCGCCATCCCAATATTCTACGTCTTTATGGCTACTTTTATGATCAGGGTGAACTCAAGGTAGCAGATTTGGGGTGGTCAGTGCATATATTCTCAATCGCAGTCGGACCATGTGCGGCACTCTTTGATTACTCCCCCCCCCTCCTGAGATGGGTCTGCAGATTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0000154 GO:0002097 GO:0002101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0022613 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0051391 GO:0051392 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1904812 GO:1990882 GO:1990883 GO:1990884 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

DUF1726 GNAT_acetyltr_2 Helicase_RecD tRNA_bind_2

Protein Analysis

141

Amino Acids

16.26

Weight (kDa)

5.24

Isoelectric Point (pI)

66.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	46 - 103	1.5e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016797)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27322 FvH4_3g27322 FvH4_4g11030 FvH4_4g11060 FvH4_4g11063 FvH4_4g11430 FvH4_5g27997 FvH4_5g28160 FvH4_5g28220 FvH4_5g28371 FvH4_6g25551 FvH4_6g25850 FvH4_c17g00081 FvH4_c17g00081

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	368
AdeI	CACNNNGTG	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	3 cut(s)	65, 187, 239
AluBI	AGCT	2 cut(s)	10, 223
AluI	AGCT	2 cut(s)	10, 223
ApeKI	GCWGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	359
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	359
BarI	GAAGNNNNNNTAC	2 cut(s)	225, 257
BbsI	GAAGAC	1 cut(s)	72
BccI	CCATC	2 cut(s)	267, 396
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	409
BisI	GCNGC	2 cut(s)	11, 369
BlsI	GCNGC	2 cut(s)	12, 370
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	230
BsaBI	GATNNNNATC	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse3DI	GCAATG	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	135
BseGI	GGATG	1 cut(s)	259
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	2 cut(s)	221, 389
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	403
Bsp143I	GATC	3 cut(s)	14, 130, 295
BspACI	CCGC	1 cut(s)	368
BspCNI	CTCAG	2 cut(s)	220, 390
BspMAI	CTGCAG	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	120
BssMI	GATC	3 cut(s)	14, 130, 295
Bst6I	CTCTTC	1 cut(s)	188
BstDEI	CTNAG	2 cut(s)	207, 398
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	3 cut(s)	17, 133, 298
BstMBI	GATC	3 cut(s)	14, 130, 295
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	1 cut(s)	409
BstV2I	GAAGAC	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	359
CviAII	CATG	1 cut(s)	363
CviJI	RGCY	4 cut(s)	10, 44, 223, 285
CviKI_1	RGCY	4 cut(s)	10, 44, 223, 285
DdeI	CTNAG	2 cut(s)	207, 398
DpnI	GATC	3 cut(s)	16, 132, 297
DpnII	GATC	3 cut(s)	14, 130, 295
DraI	TTTAAA	2 cut(s)	24, 418
DraIII	CACNNNGTG	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	359
FaeI	CATG	1 cut(s)	366
FatI	CATG	1 cut(s)	362
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	11, 369
FokI	GGATG	1 cut(s)	246
Fsp4HI	GCNGC	2 cut(s)	11, 369
GluI	GCNGC	2 cut(s)	11, 369
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	1 cut(s)	366
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	1 cut(s)	359
Hpy188III	TCNNGA	3 cut(s)	128, 187, 397
Hpy8I	GTNNAC	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	5 cut(s)	113, 120, 199, 337, 411
HpyF3I	CTNAG	2 cut(s)	207, 398
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	1 cut(s)	366
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	14, 130, 295
LpnPI	CCDG	7 cut(s)	16, 158, 194, 206, 243, 284, 410
LweI	GCATC	1 cut(s)	226
MaeII	ACGT	1 cut(s)	274
MalI	GATC	3 cut(s)	16, 132, 297
MboI	GATC	3 cut(s)	14, 130, 295
MboII	GAAGA	4 cut(s)	77, 86, 175, 245
MluCI	AATT	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	3 cut(s)	34, 191, 404
MseI	TTAA	2 cut(s)	23, 417
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	230
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	3 cut(s)	14, 130, 295
NlaIII	CATG	1 cut(s)	366
PkrI	GCNGC	2 cut(s)	12, 370
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	359
PstI	CTGCAG	1 cut(s)	413
SaqAI	TTAA	2 cut(s)	23, 417
SatI	GCNGC	2 cut(s)	11, 369
Sau3AI	GATC	3 cut(s)	14, 130, 295
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	6 cut(s)	12, 195, 213, 225, 277, 315
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	409
SinI	GGWCC	1 cut(s)	359
SmiI	ATTTAAAT	1 cut(s)	418
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	1 cut(s)	90
SsiI	CCGC	1 cut(s)	368
SspI	AATATT	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	228
SwaI	ATTTAAAT	1 cut(s)	418
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	1 cut(s)	83
TasI	AATT	1 cut(s)	90
TauI	GCSGC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	23, 417
Tru9I	TTAA	2 cut(s)	23, 417
TscAI	CASTG	1 cut(s)	339
TseI	GCWGC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.