Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010544

Physical Location & Seq

Genomic Coordinates Forward (+)

20728442 .. 20733579

Gene Structure 5138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27670.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGGGAACTTGTGCGCTAAACCAGCCAGGTGTGCTCATGCTTCTTCCAACAACTTCCCTCCTCCTCCTCATCCTCCTCCTGGAAGTTCAAAGTACAATGGCGAGGAACAGCAGGATTTAGCATCCTCCAAGCAGGGCAGGCCATTGGGTGGTCTGAATACTACAGCTCTAATAGCACCCAATGCAGTTAATACATGTGTTTCTAGCACCCTTAAGTCCTTTAGTTTCATTGATCTCAAGAATGCCACTAGGAACTTCCGCCCAGATAGTCTACTTGGAGAGGGAGGGTTCGGGTGGGTCTTCAAAGGCTGGATTGATGCAAACACTTTAGCTCCCACTAGACCAGGGACTGGCTTGGTGGTGGCAATCAAGAGGCTCAAGCAGGAAAGCTTTCAAGGTCACAAGGAATGGCTTGCAGAAGTCAACTATCTTGGTCAACTTCACCATGAAAATCTTGTCAAACTCATAGGCTATTGCTCAGAATCTGACAATAGACTTCTTGTTTACGAGTTTATGCCTAAGGGAAGTCTGGAGAATCATTTGTTTAGGAAAGGTGTACAGCCTATACCATGGGCTATGCGGATGAATATTGCAGTGGATGTTGCAAGGGGGTTGTCCTTTTTGCATAGTTTAGATGCTAATGTTATCTACCGTGACTTGAAGGCTTCCAACGTTCTACTTGATTCAGATTTCAGTGCAAAGCTATCAGATTTTGGCTTAGCAAGGGACGGTCCTACTGGAGACAACACTCATGTTTCAACCAGAGTCGTGGGAACTCGAGGCTACGCTGCACCGGAATATGTTGCTACAGGTCATTTGACACCAAAGAGTGATGTGTACAGCTTTGGTGTAGTGCTGTTAGAGCTACTATCAGGAAGACGAGCAATGGATGATGAGAGAGTTGGCAGTGTGGAGGAAACACTGGTGGATTGGGCAAAGCCATTTTTGAGTGATAGTAAACGAGTTCTAAGAATCATGGACACAAGATTGGGGGGTCAATACCCGAAGAAAGCCGCCCAAGCTGCAGCTGCACTTGCATTACAATGTCTTCATACAGATCCAAAGAATAGGCCACTAATGATTGATATTCTAGCCACATTGGAACGACTGCACTCAAAGGAGACACTGCGGACTCAACAACCTAAAATAGACCATCATGGGGTTAAGCATTCAAACCATCTCGCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

397

Amino Acids

43.52

Weight (kDa)

9.16

Isoelectric Point (pI)

26.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	88 - 363	2.6e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	89 - 365	7e-49	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670
malus_domestica	MD03G1163900.v1.1
prunus_persica	Prupe.6G156700_v2.0.a1
pyrus_communis	pycom5153684g00330
rosa_chinensis	RchiOBHm_Chr5g0050011
rosa_laevigata	RLG00000034680
rosa_multiflora	Rmu_sc0000333.1_g000012
rosa_roxburghii	Rroxscaffold_1G00031130
rosa_rugosa	Rorug05G0256700 Rorug05G0256800
rosa_samantha	Rh5AG329800 Rh5BG340400 Rh5CG366600 Rh5DG353000
rosa_wichuraiana	Rw5G031130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	149, 350
AccI	GTMKAC	1 cut(s)	271
AciI	CCGC	4 cut(s)	259, 580, 1014, 1129
AclI	AACGTT	1 cut(s)	672
AclWI	GGATC	1 cut(s)	1052
AfaI	GTAC	3 cut(s)	95, 558, 839
AfiI	CCNNNNNNNGG	4 cut(s)	80, 149, 350, 1159
AflII	CTTAAG	1 cut(s)	212
AflIII	ACRYGT	1 cut(s)	194
AgsI	TTSAA	6 cut(s)	90, 304, 395, 661, 759, 1173
AjnI	CCWGG	3 cut(s)	26, 79, 343
AluBI	AGCT	8 cut(s)	167, 332, 390, 703, 843, 865, 1022, 1028
AluI	AGCT	8 cut(s)	167, 332, 390, 703, 843, 865, 1022, 1028
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	2 cut(s)	735, 1115
AlwI	GGATC	1 cut(s)	1052
AlwNI	CAGNNNCTG	2 cut(s)	350, 485
Ama87I	CYCGRG	1 cut(s)	777
AoxI	GGCC	2 cut(s)	140, 1070
ApeKI	GCWGC	4 cut(s)	788, 1022, 1025, 1028
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	731
AsuHPI	GGTGA	1 cut(s)	434
AvaI	CYCGRG	1 cut(s)	777
AvaII	GGWCC	1 cut(s)	731
AxyI	CCTNAGG	1 cut(s)	519
BbsI	GAAGAC	3 cut(s)	292, 883, 1040
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	4 cut(s)	775, 1009, 1015, 1037
BccI	CCATC	2 cut(s)	1161, 1185
BciT130I	CCWGG	3 cut(s)	28, 81, 345
BcoDI	GTCTC	2 cut(s)	735, 1115
BfaI	CTAG	4 cut(s)	204, 249, 339, 1091
BfmI	CTRYAG	3 cut(s)	162, 807, 1023
BfrI	CTTAAG	1 cut(s)	212
BisI	GCNGC	5 cut(s)	789, 1014, 1023, 1026, 1029
BlpI	GCTNAGC	1 cut(s)	718
BlsI	GCNGC	5 cut(s)	790, 1015, 1024, 1027, 1030
Bme1390I	CCNGG	3 cut(s)	28, 81, 345
Bme18I	GGWCC	1 cut(s)	731
BmeT110I	CYCGRG	1 cut(s)	777
BmgT120I	GGNCC	1 cut(s)	731
BmrFI	CCNGG	3 cut(s)	28, 81, 345
BmsI	GCATC	3 cut(s)	131, 307, 625
BpiI	GAAGAC	3 cut(s)	292, 883, 1040
BpmI	CTGGAG	2 cut(s)	551, 759
Bpu1102I	GCTNAGC	1 cut(s)	718
BpuEI	CTTGAG	2 cut(s)	221, 362
BsaJI	CCNNGG	2 cut(s)	344, 569
BsaWI	WCCGGW	1 cut(s)	793
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 149, 350, 1159
Bse1I	ACTGG	3 cut(s)	355, 742, 927
Bse21I	CCTNAGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	891
BseBI	CCWGG	3 cut(s)	28, 81, 345
BseDI	CCNNGG	2 cut(s)	344, 569
BseGI	GGATG	5 cut(s)	70, 122, 588, 604, 895
BseLI	CCNNNNNNNGG	4 cut(s)	80, 149, 350, 1159
BseMI	GCAATG	1 cut(s)	891
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	3 cut(s)	355, 742, 927
BseRI	GAGGAG	4 cut(s)	51, 54, 57, 66
BseXI	GCAGC	4 cut(s)	775, 1009, 1015, 1037
BsgI	GTGCAG	3 cut(s)	774, 1014, 1094
BshFI	GGCC	2 cut(s)	142, 1072
BsiHKAI	GWGCWC	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	777
BsiSI	CCGG	1 cut(s)	794
BslFI	GGGAC	2 cut(s)	361, 740
BslI	CCNNNNNNNGG	4 cut(s)	80, 149, 350, 1159
BsmAI	GTCTC	2 cut(s)	735, 1115
BsmFI	GGGAC	2 cut(s)	361, 740
BsmI	GAATGC	2 cut(s)	247, 1168
BsnI	GGCC	2 cut(s)	142, 1072
BsoBI	CYCGRG	1 cut(s)	777
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp1407I	TGTACA	2 cut(s)	556, 837
Bsp143I	GATC	2 cut(s)	232, 1057
Bsp1720I	GCTNAGC	1 cut(s)	718
Bsp19I	CCATGG	1 cut(s)	569
BspACI	CCGC	4 cut(s)	259, 580, 1014, 1129
BspANI	GGCC	2 cut(s)	142, 1072
BspCNI	CTCAG	1 cut(s)	491
BspMAI	CTGCAG	1 cut(s)	1027
BspPI	GGATC	1 cut(s)	1052
BspTI	CTTAAG	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	891
BsrGI	TGTACA	2 cut(s)	556, 837
BsrI	ACTGG	3 cut(s)	355, 742, 927
BssECI	CCNNGG	2 cut(s)	344, 569
BssMI	GATC	2 cut(s)	232, 1057
BssT1I	CCWWGG	1 cut(s)	569
Bst2UI	CCWGG	3 cut(s)	28, 81, 345
Bst4CI	ACNGT	2 cut(s)	653, 731
BstAFI	CTTAAG	1 cut(s)	212
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstAUI	TGTACA	2 cut(s)	556, 837
BstC8I	GCNNGC	2 cut(s)	140, 414
BstDEI	CTNAG	4 cut(s)	478, 519, 718, 968
BstDSI	CCRYGG	1 cut(s)	569
BstF5I	GGATG	5 cut(s)	70, 122, 588, 604, 895
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	2 cut(s)	235, 1060
BstMAI	GTCTC	2 cut(s)	735, 1115
BstMBI	GATC	2 cut(s)	232, 1057
BstNI	CCWGG	3 cut(s)	28, 81, 345
BstNSI	RCATGY	1 cut(s)	198
BstSCI	CCNGG	3 cut(s)	26, 79, 343
BstSFI	CTRYAG	3 cut(s)	162, 807, 1023
BstV1I	GCAGC	4 cut(s)	775, 1009, 1015, 1037
BstV2I	GAAGAC	3 cut(s)	292, 883, 1040
BstX2I	RGATCY	1 cut(s)	1057
BstXI	CCANNNNNNTGG	1 cut(s)	769
BstYI	RGATCY	1 cut(s)	1057
Bsu36I	CCTNAGG	1 cut(s)	519
BsuRI	GGCC	2 cut(s)	142, 1072
BtgI	CCRYGG	1 cut(s)	569
BtsCI	GGATG	5 cut(s)	70, 122, 588, 604, 895
BtsI	GCAGTG	3 cut(s)	600, 913, 1124
BtsIMutI	CAGTG	5 cut(s)	600, 700, 913, 920, 1124
Cac8I	GCNNGC	2 cut(s)	140, 414
CaiI	CAGNNNCTG	2 cut(s)	350, 485
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	731
Csp6I	GTAC	3 cut(s)	94, 557, 838
CviAII	CATG	7 cut(s)	38, 195, 446, 570, 752, 976, 1157
CviQI	GTAC	3 cut(s)	94, 557, 838
DdeI	CTNAG	4 cut(s)	478, 519, 718, 968
DpnI	GATC	2 cut(s)	234, 1059
DpnII	GATC	2 cut(s)	232, 1057
EciI	GGCGGA	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	569
Eco47I	GGWCC	1 cut(s)	731
Eco81I	CCTNAGG	1 cut(s)	519
Eco88I	CYCGRG	1 cut(s)	777
EcoRII	CCWGG	3 cut(s)	26, 79, 343
EcoT14I	CCWWGG	1 cut(s)	569
ErhI	CCWWGG	1 cut(s)	569
FaeI	CATG	7 cut(s)	41, 198, 449, 573, 755, 979, 1160
FaqI	GGGAC	2 cut(s)	361, 740
FatI	CATG	7 cut(s)	37, 194, 445, 569, 751, 975, 1156
FblI	GTMKAC	1 cut(s)	271
Fnu4HI	GCNGC	5 cut(s)	789, 1014, 1023, 1026, 1029
FokI	GGATG	5 cut(s)	57, 109, 595, 611, 902
Fsp4HI	GCNGC	5 cut(s)	789, 1014, 1023, 1026, 1029
FspBI	CTAG	4 cut(s)	204, 249, 339, 1091
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	5 cut(s)	789, 1014, 1023, 1026, 1029
GsuI	CTGGAG	2 cut(s)	551, 759
HaeIII	GGCC	2 cut(s)	142, 1072
HapII	CCGG	1 cut(s)	794
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	7 cut(s)	41, 198, 449, 573, 755, 979, 1160
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HincII	GTYRAC	2 cut(s)	424, 437
HindII	GTYRAC	2 cut(s)	424, 437
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	6 cut(s)	482, 535, 683, 765, 972, 1132
HpaII	CCGG	1 cut(s)	794
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	7 cut(s)	272, 424, 437, 505, 557, 838, 959
Hpy188I	TCNGA	5 cut(s)	156, 481, 487, 688, 709
Hpy188III	TCNNGA	4 cut(s)	238, 370, 530, 873
Hpy8I	GTNNAC	7 cut(s)	272, 424, 437, 505, 557, 838, 959
HpyAV	CCTTC	1 cut(s)	655
HpyCH4III	ACNGT	2 cut(s)	653, 731
HpyCH4IV	ACGT	1 cut(s)	672
HpyF3I	CTNAG	4 cut(s)	478, 519, 718, 968
HpySE526I	ACGT	1 cut(s)	672
Hsp92II	CATG	7 cut(s)	41, 198, 449, 573, 755, 979, 1160
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	232, 1057
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	4 cut(s)	775, 1009, 1015, 1037
LweI	GCATC	3 cut(s)	131, 307, 625
MaeI	CTAG	4 cut(s)	204, 249, 339, 1091
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	2 cut(s)	398, 653
MalI	GATC	2 cut(s)	234, 1059
MboI	GATC	2 cut(s)	232, 1057
MboII	GAAGA	5 cut(s)	36, 292, 888, 1018, 1040
MflI	RGATCY	1 cut(s)	1057
MhlI	GDGCHC	1 cut(s)	37
MlyI	GAGTC	2 cut(s)	774, 1126
MmeI	TCCRAC	2 cut(s)	72, 693
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	3 cut(s)	189, 213, 1164
MslI	CAYNNNNRTG	1 cut(s)	1042
MspA1I	CMGCKG	1 cut(s)	1028
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	1 cut(s)	794
MspR9I	CCNGG	3 cut(s)	28, 81, 345
Mva1269I	GAATGC	2 cut(s)	247, 1168
MvaI	CCWGG	3 cut(s)	28, 81, 345
NcoI	CCATGG	1 cut(s)	569
NdeII	GATC	2 cut(s)	232, 1057
NlaIII	CATG	7 cut(s)	41, 198, 449, 573, 755, 979, 1160
NmuCI	GTSAC	2 cut(s)	398, 653
NspI	RCATGY	1 cut(s)	198
PaeR7I	CTCGAG	1 cut(s)	777
PciI	ACATGT	1 cut(s)	194
PctI	GAATGC	2 cut(s)	247, 1168
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	4 cut(s)	482, 535, 683, 972
PflMI	CCANNNNNTGG	2 cut(s)	149, 350
PfoI	TCCNGGA	1 cut(s)	79
PkrI	GCNGC	5 cut(s)	790, 1015, 1024, 1027, 1030
PleI	GAGTC	2 cut(s)	773, 1126
PpsI	GAGTC	2 cut(s)	773, 1126
PscI	ACATGT	1 cut(s)	194
Psp1406I	AACGTT	1 cut(s)	672
Psp6I	CCWGG	3 cut(s)	26, 79, 343
PspGI	CCWGG	3 cut(s)	26, 79, 343
PspPI	GGNCC	1 cut(s)	731
PspXI	VCTCGAGB	1 cut(s)	777
PstI	CTGCAG	1 cut(s)	1027
PstNI	CAGNNNCTG	2 cut(s)	350, 485
PsuI	RGATCY	1 cut(s)	1057
PvuII	CAGCTG	1 cut(s)	1028
RsaI	GTAC	3 cut(s)	95, 558, 839
RsaNI	GTAC	3 cut(s)	94, 557, 838
RseI	CAYNNNNRTG	1 cut(s)	1042
SaqAI	TTAA	3 cut(s)	189, 213, 1164
SatI	GCNGC	5 cut(s)	789, 1014, 1023, 1026, 1029
Sau3AI	GATC	2 cut(s)	232, 1057
Sau96I	GGNCC	1 cut(s)	731
SchI	GAGTC	2 cut(s)	774, 1126
ScrFI	CCNGG	3 cut(s)	28, 81, 345
SduI	GDGCHC	1 cut(s)	37
SfaNI	GCATC	3 cut(s)	131, 307, 625
SfcI	CTRYAG	3 cut(s)	162, 807, 1023
Sfr274I	CTCGAG	1 cut(s)	777
SinI	GGWCC	1 cut(s)	731
SlaI	CTCGAG	1 cut(s)	777
SmiMI	CAYNNNNRTG	1 cut(s)	1042
SmlI	CTYRAG	4 cut(s)	212, 236, 377, 777
SmoI	CTYRAG	4 cut(s)	212, 236, 377, 777
SsiI	CCGC	4 cut(s)	259, 580, 1014, 1129
SspI	AATATT	1 cut(s)	589
SspMI	CTAG	4 cut(s)	204, 249, 339, 1091
StyD4I	CCNGG	3 cut(s)	26, 79, 343
StyI	CCWWGG	1 cut(s)	569
TaaI	ACNGT	2 cut(s)	653, 731
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	1 cut(s)	778
TatI	WGTACW	3 cut(s)	93, 556, 837
TauI	GCSGC	1 cut(s)	1016
TfiI	GAWTC	4 cut(s)	482, 535, 683, 972
Tru1I	TTAA	3 cut(s)	189, 213, 1164
Tru9I	TTAA	3 cut(s)	189, 213, 1164
TscAI	CASTG	5 cut(s)	600, 700, 913, 927, 1131
TseFI	GTSAC	2 cut(s)	398, 653
TseI	GCWGC	4 cut(s)	788, 1022, 1025, 1028
Tsp45I	GTSAC	2 cut(s)	398, 653
TspDTI	ATGAA	4 cut(s)	217, 462, 599, 1040
TspRI	CASTG	5 cut(s)	600, 700, 913, 927, 1131
Van91I	CCANNNNNTGG	2 cut(s)	149, 350
Vha464I	CTTAAG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	731
XceI	RCATGY	1 cut(s)	198
XhoI	CTCGAG	1 cut(s)	777
XmiI	GTMKAC	1 cut(s)	271
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	4 cut(s)	204, 249, 339, 1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.