Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010544

Physical Location & Seq

Genomic Coordinates Forward (+)

48247968 .. 48252780

Gene Structure 4813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034680

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGGGAACTTGTGCTTTAAACCAGCAAAGTGTGCTCACGCTTCTTCCAACAGCTTCCCTGTCCCTCCTGGAGGTACAAAGTACAATGGGAAGGAACAGCAGGATTTAGCATCCTCCAACCAGGACAGACCATTGGGTGGTCCCAATACTAAAGCTCTAATAGCACCCAATGCAGCTGATACATGTGTTCCTAGCACCCTTAAGTCCTTTAGTTTCATTGATCTCAAGAATGCTACTAGGAACTTCCGCCCGGATAGTCTACTTGGAGAGGGAGGGTTTGGGTGGGTTTTCAAAGGCTGGATTGATGCAAACACCTTAGCTCCCACTAGACCAGGAACTGGCTTGGTGGTGGCTATCAAGAGGCTCAAGCGAGAAAGCTTTCAAGGTCACAAGGAATGGCTTGCAGAAGTGAACTATCTTGGTCAGTTTCACCATGAAAATCTTGTTAAACTCATAGGGTATTGCTCAGAATCTGACAATAGACTTCTTGTTTACGAGTTTATGCCCAAGGGAAGTTTGGAGAATCATTTGTTTAGGAAAGGTGTACAGCCTATACCATGGGCTATGCGAATGAATATTGCAATTGATGTTGCAAGGGGGTTGTCCTTTTTACATAGTTTAGATGCTAATGTTATCTACCGTGACTTGAAAGCTTCCAACATTCTACTTGATTCAGATTTCAGTGCAAAGCTATCAGATTTTGGTTTAGCAAGGGACGGTCCTACTGGAGACAACACTCATGTTTCAACCAGAGTCGTGGGAACTAGAGGCTATGCTGCACCAGAATATGTTGCTACAGGTCACTTGACACCAAAGAGTGATGTGTACAGCTTCGGTGTTGTTCTGTTAGAGCTACTATCAGGAAGACGAGCAATGGATGATGAGAGAGCTGGGAGTGTGGAGGAAACACTGGTGGATTGGGCAAAGCCATTTTTGATTGATAGTAAACGAGTTCTGAGAATCATGGACACAAGGTTGGGGGGTCAATATCCGAAGAAAGCCGCGCAAGCTGCAGCTGCACTTGCTTTGCAGTGTCTTCATACAGATCCAAAGAATAGGCCACTCATGATCGATGGTCTAGCCGCATTGGAACGACTCCACTCAAAGGAGACAGTGCGGACTCAACAACCTAAACTAACCCCTCATGGGGTTAAGCATTCGAACCATCTCACAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

393

Amino Acids

43.1

Weight (kDa)

9.3

Isoelectric Point (pI)

24.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	85 - 354	3.3e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	86 - 356	5.6e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670
malus_domestica	MD03G1163900.v1.1
prunus_persica	Prupe.6G156700_v2.0.a1
pyrus_communis	pycom5153684g00330
rosa_chinensis	RchiOBHm_Chr5g0050011
rosa_laevigata	RLG00000034680
rosa_multiflora	Rmu_sc0000333.1_g000012
rosa_roxburghii	Rroxscaffold_1G00031130
rosa_rugosa	Rorug05G0256700 Rorug05G0256800
rosa_samantha	Rh5AG329800 Rh5BG340400 Rh5CG366600 Rh5DG353000
rosa_wichuraiana	Rw5G031130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	137, 338
AccI	GTMKAC	1 cut(s)	259
AccII	CGCG	1 cut(s)	1004
AciI	CCGC	4 cut(s)	247, 1002, 1083, 1117
AclWI	GGATC	1 cut(s)	1040
AfaI	GTAC	4 cut(s)	76, 83, 546, 827
AfiI	CCNNNNNNNGG	6 cut(s)	71, 137, 338, 1105, 1146, 1147
AflII	CTTAAG	1 cut(s)	200
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	4 cut(s)	292, 383, 649, 747
AjnI	CCWGG	3 cut(s)	67, 120, 331
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	2 cut(s)	723, 1103
AlwI	GGATC	1 cut(s)	1040
AlwNI	CAGNNNCTG	2 cut(s)	338, 473
AoxI	GGCC	1 cut(s)	1058
ApeKI	GCWGC	5 cut(s)	173, 776, 1010, 1013, 1016
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	1006
AspS9I	GGNCC	2 cut(s)	140, 719
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	422
AsuII	TTCGAA	1 cut(s)	1160
AvaII	GGWCC	2 cut(s)	140, 719
BaeI	ACNNNNGTAYC	2 cut(s)	171, 204
BbsI	GAAGAC	2 cut(s)	871, 1028
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	5 cut(s)	185, 763, 997, 1003, 1025
BccI	CCATC	2 cut(s)	1067, 1173
BciT130I	CCWGG	3 cut(s)	69, 122, 333
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	2 cut(s)	723, 1103
BfaI	CTAG	5 cut(s)	192, 237, 327, 765, 1079
BfmI	CTRYAG	2 cut(s)	795, 1011
BfrI	CTTAAG	1 cut(s)	200
BisI	GCNGC	7 cut(s)	174, 777, 1002, 1011, 1014, 1017, 1083
BlsI	GCNGC	7 cut(s)	175, 778, 1003, 1012, 1015, 1018, 1084
Bme1390I	CCNGG	4 cut(s)	69, 122, 251, 333
Bme18I	GGWCC	2 cut(s)	140, 719
BmgT120I	GGNCC	2 cut(s)	140, 719
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	4 cut(s)	69, 122, 251, 333
BmsI	GCATC	3 cut(s)	119, 295, 613
BpiI	GAAGAC	2 cut(s)	871, 1028
BpmI	CTGGAG	2 cut(s)	90, 747
Bpu10I	CCTNAGC	1 cut(s)	316
Bpu14I	TTCGAA	1 cut(s)	1160
BpuEI	CTTGAG	2 cut(s)	209, 350
BpuMI	CCSGG	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	1071
BsaJI	CCNNGG	2 cut(s)	507, 557
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	6 cut(s)	71, 137, 338, 1105, 1146, 1147
Bse1I	ACTGG	3 cut(s)	343, 730, 915
Bse3DI	GCAATG	1 cut(s)	879
BseBI	CCWGG	3 cut(s)	69, 122, 333
BseCI	ATCGAT	1 cut(s)	1071
BseDI	CCNNGG	2 cut(s)	507, 557
BseGI	GGATG	2 cut(s)	110, 883
BseLI	CCNNNNNNNGG	6 cut(s)	71, 137, 338, 1105, 1146, 1147
BseMI	GCAATG	1 cut(s)	879
BseMII	CTCAG	2 cut(s)	480, 947
BseNI	ACTGG	3 cut(s)	343, 730, 915
BseXI	GCAGC	5 cut(s)	185, 763, 997, 1003, 1025
BseYI	CCCAGC	1 cut(s)	890
BsgI	GTGCAG	2 cut(s)	762, 1002
Bsh1236I	CGCG	1 cut(s)	1004
BshFI	GGCC	1 cut(s)	1060
BshVI	ATCGAT	1 cut(s)	1071
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	251
BslFI	GGGAC	3 cut(s)	47, 126, 728
BslI	CCNNNNNNNGG	6 cut(s)	71, 137, 338, 1105, 1146, 1147
BsmAI	GTCTC	2 cut(s)	723, 1103
BsmFI	GGGAC	3 cut(s)	47, 126, 728
BsmI	GAATGC	2 cut(s)	235, 1156
BsnI	GGCC	1 cut(s)	1060
Bsp119I	TTCGAA	1 cut(s)	1160
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp1407I	TGTACA	2 cut(s)	544, 825
Bsp143I	GATC	3 cut(s)	220, 1045, 1068
Bsp19I	CCATGG	1 cut(s)	557
BspACI	CCGC	4 cut(s)	247, 1002, 1083, 1117
BspANI	GGCC	1 cut(s)	1060
BspCNI	CTCAG	2 cut(s)	479, 948
BspDI	ATCGAT	1 cut(s)	1071
BspFNI	CGCG	1 cut(s)	1004
BspHI	TCATGA	1 cut(s)	1065
BspLI	GGNNCC	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	1015
BspPI	GGATC	1 cut(s)	1040
BspT104I	TTCGAA	1 cut(s)	1160
BspTI	CTTAAG	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	879
BsrGI	TGTACA	2 cut(s)	544, 825
BsrI	ACTGG	3 cut(s)	343, 730, 915
BssECI	CCNNGG	2 cut(s)	507, 557
BssMI	GATC	3 cut(s)	220, 1045, 1068
BssT1I	CCWWGG	2 cut(s)	507, 557
Bst2UI	CCWGG	3 cut(s)	69, 122, 333
Bst4CI	ACNGT	3 cut(s)	641, 719, 1114
BstAFI	CTTAAG	1 cut(s)	200
BstAPI	GCANNNNNTGC	2 cut(s)	32, 170
BstAUI	TGTACA	2 cut(s)	544, 825
BstBI	TTCGAA	1 cut(s)	1160
BstC8I	GCNNGC	2 cut(s)	402, 1008
BstDEI	CTNAG	3 cut(s)	316, 466, 956
BstDSI	CCRYGG	1 cut(s)	557
BstENI	CCTNNNNNAGG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	110, 883
BstFNI	CGCG	1 cut(s)	1004
BstHHI	GCGC	1 cut(s)	1006
BstKTI	GATC	3 cut(s)	223, 1048, 1071
BstMAI	GTCTC	2 cut(s)	723, 1103
BstMBI	GATC	3 cut(s)	220, 1045, 1068
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 161, 170, 1007, 1010, 1016, 1022
BstNI	CCWGG	3 cut(s)	69, 122, 333
BstNSI	RCATGY	1 cut(s)	186
BstSCI	CCNGG	4 cut(s)	67, 120, 249, 331
BstSFI	CTRYAG	2 cut(s)	795, 1011
BstUI	CGCG	1 cut(s)	1004
BstV1I	GCAGC	5 cut(s)	185, 763, 997, 1003, 1025
BstV2I	GAAGAC	2 cut(s)	871, 1028
BstX2I	RGATCY	1 cut(s)	1045
BstXI	CCANNNNNNTGG	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	1045
Bsu15I	ATCGAT	1 cut(s)	1071
BsuRI	GGCC	1 cut(s)	1060
BsuTUI	ATCGAT	1 cut(s)	1071
BtgI	CCRYGG	1 cut(s)	557
BtsCI	GGATG	2 cut(s)	110, 883
BtsI	GCAGTG	1 cut(s)	1037
BtsIMutI	CAGTG	4 cut(s)	688, 908, 1037, 1119
Cac8I	GCNNGC	2 cut(s)	402, 1008
CaiI	CAGNNNCTG	2 cut(s)	338, 473
CciI	TCATGA	1 cut(s)	1065
CfoI	GCGC	1 cut(s)	1006
Cfr13I	GGNCC	2 cut(s)	140, 719
ClaI	ATCGAT	1 cut(s)	1071
Csp6I	GTAC	4 cut(s)	75, 82, 545, 826
CviAII	CATG	7 cut(s)	183, 434, 558, 740, 964, 1066, 1145
CviQI	GTAC	4 cut(s)	75, 82, 545, 826
DdeI	CTNAG	3 cut(s)	316, 466, 956
DpnI	GATC	3 cut(s)	222, 1047, 1070
DpnII	GATC	3 cut(s)	220, 1045, 1068
DraI	TTTAAA	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	236
Eco130I	CCWWGG	2 cut(s)	507, 557
Eco47I	GGWCC	2 cut(s)	140, 719
EcoNI	CCTNNNNNAGG	1 cut(s)	69
EcoRII	CCWGG	3 cut(s)	67, 120, 331
EcoT14I	CCWWGG	2 cut(s)	507, 557
ErhI	CCWWGG	2 cut(s)	507, 557
FaeI	CATG	7 cut(s)	186, 437, 561, 743, 967, 1069, 1148
FaqI	GGGAC	3 cut(s)	47, 126, 728
FatI	CATG	7 cut(s)	182, 433, 557, 739, 963, 1065, 1144
FblI	GTMKAC	1 cut(s)	259
Fnu4HI	GCNGC	7 cut(s)	174, 777, 1002, 1011, 1014, 1017, 1083
FokI	GGATG	2 cut(s)	97, 890
Fsp4HI	GCNGC	7 cut(s)	174, 777, 1002, 1011, 1014, 1017, 1083
FspBI	CTAG	5 cut(s)	192, 237, 327, 765, 1079
GlaI	GCGC	1 cut(s)	1005
GluI	GCNGC	7 cut(s)	174, 777, 1002, 1011, 1014, 1017, 1083
GsaI	CCCAGC	1 cut(s)	894
GsuI	CTGGAG	2 cut(s)	90, 747
HaeIII	GGCC	1 cut(s)	1060
HapII	CCGG	1 cut(s)	251
HhaI	GCGC	1 cut(s)	1006
Hin1II	CATG	7 cut(s)	186, 437, 561, 743, 967, 1069, 1148
Hin6I	GCGC	1 cut(s)	1004
HinP1I	GCGC	1 cut(s)	1004
HindIII	AAGCTT	2 cut(s)	376, 651
HinfI	GANTC	7 cut(s)	470, 523, 671, 753, 960, 1095, 1120
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	6 cut(s)	260, 412, 493, 545, 826, 947
Hpy188I	TCNGA	6 cut(s)	469, 475, 676, 697, 957, 993
Hpy188III	TCNNGA	4 cut(s)	226, 358, 861, 1066
Hpy8I	GTNNAC	6 cut(s)	260, 412, 493, 545, 826, 947
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	3 cut(s)	641, 719, 1114
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 161, 170, 1007, 1010, 1016, 1022
HpyF3I	CTNAG	3 cut(s)	316, 466, 956
Hsp92II	CATG	7 cut(s)	186, 437, 561, 743, 967, 1069, 1148
HspAI	GCGC	1 cut(s)	1004
Kzo9I	GATC	3 cut(s)	220, 1045, 1068
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	5 cut(s)	185, 763, 997, 1003, 1025
LweI	GCATC	3 cut(s)	119, 295, 613
MaeI	CTAG	5 cut(s)	192, 237, 327, 765, 1079
MaeIII	GTNAC	3 cut(s)	386, 641, 800
MalI	GATC	3 cut(s)	222, 1047, 1070
MboI	GATC	3 cut(s)	220, 1045, 1068
MboII	GAAGA	4 cut(s)	36, 876, 1006, 1028
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	1 cut(s)	1045
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	1 cut(s)	582
MlyI	GAGTC	3 cut(s)	762, 1089, 1114
MmeI	TCCRAC	3 cut(s)	72, 141, 681
MnlI	CCTC	9 cut(s)	65, 75, 124, 262, 266, 354, 761, 895, 1152
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	4 cut(s)	18, 201, 447, 1152
MspA1I	CMGCKG	2 cut(s)	176, 1016
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	4 cut(s)	69, 122, 251, 333
MunI	CAATTG	1 cut(s)	582
Mva1269I	GAATGC	2 cut(s)	235, 1156
MvaI	CCWGG	3 cut(s)	69, 122, 333
MvnI	CGCG	1 cut(s)	1004
MwoI	GCNNNNNNNGC	7 cut(s)	32, 161, 170, 1007, 1010, 1016, 1022
NciI	CCSGG	1 cut(s)	251
NcoI	CCATGG	1 cut(s)	557
NdeII	GATC	3 cut(s)	220, 1045, 1068
NlaIII	CATG	7 cut(s)	186, 437, 561, 743, 967, 1069, 1148
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	3 cut(s)	386, 641, 800
NspI	RCATGY	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	1160
PagI	TCATGA	1 cut(s)	1065
PciI	ACATGT	1 cut(s)	182
PctI	GAATGC	2 cut(s)	235, 1156
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	4 cut(s)	470, 523, 671, 960
PflMI	CCANNNNNTGG	2 cut(s)	137, 338
PfoI	TCCNGGA	1 cut(s)	67
PkrI	GCNGC	7 cut(s)	175, 778, 1003, 1012, 1015, 1018, 1084
PleI	GAGTC	3 cut(s)	761, 1089, 1114
PpsI	GAGTC	3 cut(s)	761, 1089, 1114
PscI	ACATGT	1 cut(s)	182
Psp6I	CCWGG	3 cut(s)	67, 120, 331
PspFI	CCCAGC	1 cut(s)	890
PspGI	CCWGG	3 cut(s)	67, 120, 331
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	2 cut(s)	140, 719
PstI	CTGCAG	1 cut(s)	1015
PstNI	CAGNNNCTG	2 cut(s)	338, 473
PsuI	RGATCY	1 cut(s)	1045
PvuII	CAGCTG	2 cut(s)	176, 1016
RsaI	GTAC	4 cut(s)	76, 83, 546, 827
RsaNI	GTAC	4 cut(s)	75, 82, 545, 826
SaqAI	TTAA	4 cut(s)	18, 201, 447, 1152
SatI	GCNGC	7 cut(s)	174, 777, 1002, 1011, 1014, 1017, 1083
Sau3AI	GATC	3 cut(s)	220, 1045, 1068
Sau96I	GGNCC	2 cut(s)	140, 719
SchI	GAGTC	3 cut(s)	762, 1089, 1114
ScrFI	CCNGG	4 cut(s)	69, 122, 251, 333
SduI	GDGCHC	1 cut(s)	37
SfaNI	GCATC	3 cut(s)	119, 295, 613
SfcI	CTRYAG	2 cut(s)	795, 1011
SfuI	TTCGAA	1 cut(s)	1160
SinI	GGWCC	2 cut(s)	140, 719
SmlI	CTYRAG	3 cut(s)	200, 224, 365
SmoI	CTYRAG	3 cut(s)	200, 224, 365
Sse9I	AATT	1 cut(s)	582
SsiI	CCGC	4 cut(s)	247, 1002, 1083, 1117
SspI	AATATT	1 cut(s)	577
SspMI	CTAG	5 cut(s)	192, 237, 327, 765, 1079
StyD4I	CCNGG	4 cut(s)	67, 120, 249, 331
StyI	CCWWGG	2 cut(s)	507, 557
TaaI	ACNGT	3 cut(s)	641, 719, 1114
TaqI	TCGA	2 cut(s)	1071, 1160
TasI	AATT	1 cut(s)	582
TatI	WGTACW	3 cut(s)	81, 544, 825
TauI	GCSGC	2 cut(s)	1004, 1085
TfiI	GAWTC	4 cut(s)	470, 523, 671, 960
Tru1I	TTAA	4 cut(s)	18, 201, 447, 1152
Tru9I	TTAA	4 cut(s)	18, 201, 447, 1152
TscAI	CASTG	4 cut(s)	688, 915, 1037, 1119
TseFI	GTSAC	3 cut(s)	386, 641, 800
TseI	GCWGC	5 cut(s)	173, 776, 1010, 1013, 1016
Tsp45I	GTSAC	3 cut(s)	386, 641, 800
TspDTI	ATGAA	4 cut(s)	205, 450, 587, 1028
TspRI	CASTG	4 cut(s)	688, 915, 1037, 1119
Van91I	CCANNNNNTGG	2 cut(s)	137, 338
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	140, 719
XagI	CCTNNNNNAGG	1 cut(s)	69
XceI	RCATGY	1 cut(s)	186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XmiI	GTMKAC	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	5 cut(s)	192, 237, 327, 765, 1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.