Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012527_4311101_to_5153684

Orthogroup ID

OG0010544

Physical Location & Seq

Genomic Coordinates Forward (+)

504496 .. 508674

Gene Structure 4179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom5153684g00330.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGATGGGAAACTGCTGCAGAAAATCTGCCAAGTGTGCTCATGCTTCTTCCATCAACTTCTCTGGAAGTACAAAGTCTAATGGCAAGCAACAGATGGATAGTACCTCTTGCTCGCAGCAGTCGACGTCTGGGAATTTGAATAAAGCTTTAGTAGCATCCAAAGCTGATATATCTGTCCCTACCAACGTCAAGTCCTTCAGTTTCAGTGATCTCAAAAATGCTACTAGGAACTTCCGCCCAGAGAGTCTGCTCGGAGAGGGAGGGTTTGGGTGGGTATTTAAAGGATGGATTGATGCAAACACATTAGCTCCCACTAAACCTGGAACTGGGTTAGTGGTGGCCATCAAGAGGCTCAAGCGAGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCGGAAGTGAACTATCTTGGTCAGCTTCGCCATGAAAATCTTGTGAAACTCATAGGGTATTGCTCAGAATCTGACAACAGACTTCTGGTTTATGAGTTCATGCCAAGGGGAAGTTTGGAGAATCATTTGTTTAGAAAAGGTGTTCAACCTATCACTTGGGCTGTTCGGATGAATATTGCAATTGATGTTGCACGGGGGTTATCTTTCTTACATAGTTTAGATGCTAATGTCATCTACCGTGACTTGAAAGCTTCCAACATTCTACTTGATTCGGATTTCAGTGCTCGGCTATCAGATTTTGGGTTAGCAAGAGATGGTCCTACTGGAGATAATACTCATGTTTCAACCAGAGTGGTCGGAACTCGAGGCTACGCTGCACCAGAATATGTTGCTACAGGTCACTTGTCGCCAAAGAGTGATGTGTATAGCTTCGGGGTTGTTTTGTTAGAGCTACTATCAGGGAGACGAGCAATGGACGATGAGAGAGCTGGGAGTGTCGAGGAAACATTGGTGGATTGGGCAAAGCCGTTCATAAGTGATAGTAGACGAGTTTTAAGAATCATGGACACAAGGTTGGGGGGTCAATACTCGAAGAAAGCAGCCCAAGCTGCAGCTGAACTTGCCTTACAGTGCTTCCATACAGACCCAAAATATAGGCCACTCATGATTGATGTTCTAGCCACAATGGAACGAATCCACCCAAAGGACACGTTACGAACTCAACAACACAAGTTAGACGATCATGGGGTCAAGCACTTGAACCATCCTCACACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

389

Amino Acids

42.97

Weight (kDa)

9.26

Isoelectric Point (pI)

26.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670
malus_domestica	MD03G1163900.v1.1
prunus_persica	Prupe.6G156700_v2.0.a1
pyrus_communis	pycom5153684g00330
rosa_chinensis	RchiOBHm_Chr5g0050011
rosa_laevigata	RLG00000034680
rosa_multiflora	Rmu_sc0000333.1_g000012
rosa_roxburghii	Rroxscaffold_1G00031130
rosa_rugosa	Rorug05G0256700 Rorug05G0256800
rosa_samantha	Rh5AG329800 Rh5BG340400 Rh5CG366600 Rh5DG353000
rosa_wichuraiana	Rw5G031130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	128
AccI	GTMKAC	2 cut(s)	122, 934
AciI	CCGC	2 cut(s)	235, 392
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	181
AcyI	GRCGYC	1 cut(s)	125
AfaI	GTAC	2 cut(s)	70, 103
AfiI	CCNNNNNNNGG	3 cut(s)	326, 348, 1093
AflIII	ACRYGT	2 cut(s)	1098, 1161
AgsI	TTSAA	6 cut(s)	139, 371, 536, 637, 735, 1150
AjnI	CCWGG	1 cut(s)	319
Alw21I	GWGCWC	2 cut(s)	40, 676
Alw26I	GTCTC	1 cut(s)	847
AlwNI	CAGNNNCTG	1 cut(s)	461
Ama87I	CYCGRG	1 cut(s)	753
AoxI	GGCC	3 cut(s)	339, 373, 1046
ApeKI	GCWGC	6 cut(s)	15, 115, 764, 989, 998, 1001
ApoI	RAATTY	1 cut(s)	133
Asp700I	GAANNNNTTC	1 cut(s)	366
AspS9I	GGNCC	1 cut(s)	707
AvaI	CYCGRG	1 cut(s)	753
AvaII	GGWCC	1 cut(s)	707
BalI	TGGCCA	1 cut(s)	341
Bbv12I	GWGCWC	2 cut(s)	40, 676
BbvI	GCAGC	6 cut(s)	2, 127, 751, 985, 1001, 1013
BccI	CCATC	6 cut(s)	59, 88, 279, 350, 698, 1161
BceAI	ACGGC	1 cut(s)	901
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	847
BfaI	CTAG	2 cut(s)	225, 1067
BfmI	CTRYAG	3 cut(s)	16, 783, 999
BisI	GCNGC	6 cut(s)	16, 116, 765, 990, 999, 1002
BlsI	GCNGC	6 cut(s)	17, 117, 766, 991, 1000, 1003
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	707
BmeT110I	CYCGRG	1 cut(s)	753
BmgT120I	GGNCC	1 cut(s)	707
BmrFI	CCNGG	1 cut(s)	321
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	3 cut(s)	164, 283, 601
BmuI	ACTGGG	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	735
BpuEI	CTTGAG	1 cut(s)	338
BsaAI	YACGTR	1 cut(s)	1164
BsaHI	GRCGYC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	494
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bsc4I	CCNNNNNNNGG	3 cut(s)	326, 348, 1093
Bse1I	ACTGG	2 cut(s)	331, 718
Bse3DI	GCAATG	1 cut(s)	867
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	494
BseGI	GGATG	4 cut(s)	155, 290, 564, 1153
BseLI	CCNNNNNNNGG	3 cut(s)	326, 348, 1093
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	2 cut(s)	331, 718
BseXI	GCAGC	6 cut(s)	2, 127, 751, 985, 1001, 1013
BseYI	CCCAGC	1 cut(s)	878
BsgI	GTGCAG	1 cut(s)	750
BshFI	GGCC	3 cut(s)	341, 375, 1048
BsiHKAI	GWGCWC	2 cut(s)	40, 676
BsiHKCI	CYCGRG	1 cut(s)	753
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	3 cut(s)	326, 348, 1093
BsmAI	GTCTC	1 cut(s)	847
BsmBI	CGTCTC	1 cut(s)	847
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	3 cut(s)	341, 375, 1048
BsoBI	CYCGRG	1 cut(s)	753
Bsp1286I	GDGCHC	2 cut(s)	40, 676
Bsp143I	GATC	2 cut(s)	208, 1129
BspACI	CCGC	2 cut(s)	235, 392
BspANI	GGCC	3 cut(s)	341, 375, 1048
BspCNI	CTCAG	1 cut(s)	467
BspHI	TCATGA	1 cut(s)	1053
BspMAI	CTGCAG	2 cut(s)	20, 1003
BsrDI	GCAATG	1 cut(s)	867
BsrI	ACTGG	2 cut(s)	331, 718
BssECI	CCNNGG	1 cut(s)	494
BssMI	GATC	2 cut(s)	208, 1129
BssNI	GRCGYC	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	494
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	629, 1020
BstACI	GRCGYC	1 cut(s)	125
BstBAI	YACGTR	1 cut(s)	1164
BstC8I	GCNNGC	3 cut(s)	86, 113, 390
BstDEI	CTNAG	1 cut(s)	454
BstF5I	GGATG	4 cut(s)	155, 290, 564, 1153
BstKTI	GATC	2 cut(s)	211, 1132
BstMAI	GTCTC	1 cut(s)	847
BstMBI	GATC	2 cut(s)	208, 1129
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 152, 161, 372, 995, 998, 1010
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	3 cut(s)	16, 783, 999
BstV1I	GCAGC	6 cut(s)	2, 127, 751, 985, 1001, 1013
BsuRI	GGCC	3 cut(s)	341, 375, 1048
BtsCI	GGATG	4 cut(s)	155, 290, 564, 1153
BtsIMutI	CAGTG	3 cut(s)	211, 676, 1025
Cac8I	GCNNGC	3 cut(s)	86, 113, 390
CaiI	CAGNNNCTG	1 cut(s)	461
CciI	TCATGA	1 cut(s)	1053
Cfr13I	GGNCC	1 cut(s)	707
Csp6I	GTAC	2 cut(s)	69, 102
CspCI	CAANNNNNGTGG	2 cut(s)	723, 758
CviAII	CATG	7 cut(s)	41, 422, 490, 728, 952, 1054, 1133
CviQI	GTAC	2 cut(s)	69, 102
DdeI	CTNAG	1 cut(s)	454
DpnI	GATC	2 cut(s)	210, 1131
DpnII	GATC	2 cut(s)	208, 1129
DraI	TTTAAA	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	339
EciI	GGCGGA	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	494
Eco47I	GGWCC	1 cut(s)	707
Eco57I	CTGAAG	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	753
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	494
Esp3I	CGTCTC	1 cut(s)	847
FaeI	CATG	7 cut(s)	44, 425, 493, 731, 955, 1057, 1136
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	7 cut(s)	40, 421, 489, 727, 951, 1053, 1132
FblI	GTMKAC	2 cut(s)	122, 934
Fnu4HI	GCNGC	6 cut(s)	16, 116, 765, 990, 999, 1002
FokI	GGATG	4 cut(s)	142, 297, 571, 1140
Fsp4HI	GCNGC	6 cut(s)	16, 116, 765, 990, 999, 1002
FspBI	CTAG	2 cut(s)	225, 1067
GluI	GCNGC	6 cut(s)	16, 116, 765, 990, 999, 1002
GsaI	CCCAGC	1 cut(s)	882
GsuI	CTGGAG	1 cut(s)	735
HaeIII	GGCC	3 cut(s)	341, 375, 1048
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	7 cut(s)	44, 425, 493, 731, 955, 1057, 1136
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HindIII	AAGCTT	3 cut(s)	144, 364, 639
HinfI	GANTC	6 cut(s)	244, 458, 511, 659, 948, 1083
Hpy166II	GTNNAC	3 cut(s)	123, 400, 935
Hpy188I	TCNGA	7 cut(s)	254, 457, 463, 558, 664, 685, 749
Hpy188III	TCNNGA	3 cut(s)	63, 346, 1054
Hpy8I	GTNNAC	3 cut(s)	123, 400, 935
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	2 cut(s)	629, 1020
HpyCH4IV	ACGT	4 cut(s)	125, 186, 1100, 1163
HpyCH4V	TGCA	6 cut(s)	18, 296, 569, 581, 767, 1001
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 152, 161, 372, 995, 998, 1010
HpyF3I	CTNAG	1 cut(s)	454
HpySE526I	ACGT	4 cut(s)	125, 186, 1100, 1163
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	7 cut(s)	44, 425, 493, 731, 955, 1057, 1136
Kzo9I	GATC	2 cut(s)	208, 1129
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	6 cut(s)	2, 127, 751, 985, 1001, 1013
LweI	GCATC	3 cut(s)	164, 283, 601
MaeI	CTAG	2 cut(s)	225, 1067
MaeII	ACGT	4 cut(s)	125, 186, 1100, 1163
MaeIII	GTNAC	3 cut(s)	629, 788, 1101
MalI	GATC	2 cut(s)	210, 1131
MboI	GATC	2 cut(s)	208, 1129
MboII	GAAGA	2 cut(s)	39, 994
MfeI	CAATTG	1 cut(s)	570
MhlI	GDGCHC	2 cut(s)	40, 676
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	2 cut(s)	133, 570
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	2 cut(s)	669, 727
MnlI	CCTC	7 cut(s)	115, 250, 254, 342, 749, 883, 1167
Mox20I	TGGCCA	1 cut(s)	341
MroXI	GAANNNNTTC	1 cut(s)	366
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	2 cut(s)	279, 944
Msp20I	TGGCCA	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	1004
MspR9I	CCNGG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	7 cut(s)	35, 152, 161, 372, 995, 998, 1010
NdeII	GATC	2 cut(s)	208, 1129
NlaIII	CATG	7 cut(s)	44, 425, 493, 731, 955, 1057, 1136
NmeAIII	GCCGAG	1 cut(s)	655
NmuCI	GTSAC	2 cut(s)	629, 788
PaeR7I	CTCGAG	1 cut(s)	753
PagI	TCATGA	1 cut(s)	1053
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	5 cut(s)	458, 511, 659, 948, 1083
PkrI	GCNGC	6 cut(s)	17, 117, 766, 991, 1000, 1003
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
Ppu21I	YACGTR	1 cut(s)	1164
Psp6I	CCWGG	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	878
PspGI	CCWGG	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	707
PspXI	VCTCGAGB	1 cut(s)	753
PsrI	GAACNNNNNNTAC	2 cut(s)	999, 1031
PstI	CTGCAG	2 cut(s)	20, 1003
PstNI	CAGNNNCTG	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	1004
RsaI	GTAC	2 cut(s)	70, 103
RsaNI	GTAC	2 cut(s)	69, 102
SalI	GTCGAC	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	279, 944
SatI	GCNGC	6 cut(s)	16, 116, 765, 990, 999, 1002
Sau3AI	GATC	2 cut(s)	208, 1129
Sau96I	GGNCC	1 cut(s)	707
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	2 cut(s)	40, 676
SfaNI	GCATC	3 cut(s)	164, 283, 601
SfcI	CTRYAG	3 cut(s)	16, 783, 999
Sfr274I	CTCGAG	1 cut(s)	753
SinI	GGWCC	1 cut(s)	707
SlaI	CTCGAG	1 cut(s)	753
SmlI	CTYRAG	2 cut(s)	353, 753
SmoI	CTYRAG	2 cut(s)	353, 753
Sse9I	AATT	2 cut(s)	133, 570
SsiI	CCGC	2 cut(s)	235, 392
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	2 cut(s)	225, 1067
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	494
TaaI	ACNGT	2 cut(s)	629, 1020
TaiI	ACGT	4 cut(s)	128, 189, 1103, 1166
TaqI	TCGA	4 cut(s)	122, 754, 888, 980
TasI	AATT	2 cut(s)	133, 570
TatI	WGTACW	1 cut(s)	68
TfiI	GAWTC	5 cut(s)	458, 511, 659, 948, 1083
Tru1I	TTAA	2 cut(s)	279, 944
Tru9I	TTAA	2 cut(s)	279, 944
TscAI	CASTG	3 cut(s)	211, 676, 1025
TseFI	GTSAC	2 cut(s)	629, 788
TseI	GCWGC	6 cut(s)	15, 115, 764, 989, 998, 1001
Tsp45I	GTSAC	2 cut(s)	629, 788
TspDTI	ATGAA	4 cut(s)	438, 478, 575, 910
TspRI	CASTG	3 cut(s)	211, 676, 1025
VpaK11BI	GGWCC	1 cut(s)	707
XapI	RAATTY	1 cut(s)	133
XhoI	CTCGAG	1 cut(s)	753
XmiI	GTMKAC	2 cut(s)	122, 934
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	2 cut(s)	225, 1067
ZraI	GACGTC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.