Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010544

Physical Location & Seq

Genomic Coordinates Forward (+)

48994843 .. 49000582

Gene Structure 5740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG353000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGGGAACTTGTGCTTTAAACCAGCAAAGTGTGCTCATGCTTCTTCCAACAACTTCCCTGTCCCTCCTGGAGGTACAAAGTACAATGGGAAGGAACAGCAGGATTTAGCATCCTCCAACCAGGACAGACCATTGGGTGGTCCCAATACTAAAGCTCTAATAGCACCCAATGCAGCTGATACATGTGTTCCTAGCACCCTTAAGTCCTTTAGTTTCATTGATCTCAAGAATGCTACTAGGAACTTCCGCCCAGATAGTCTACTTGGAGAGGGAGGGTTTGGGTGTGTCTTCAAAGGCTGGATTGATGCAAACACCTTGGCTCCCACTAGACCAGGAACTGGCTTGGTGGTGGCTATCAAGAGGCTCAAGCGAGAAAGCTTTCAAGGTCACAAGGAATGGCTTGCAGAAGTGAACTATCTTGGTCAGTTTCACCATGAAAATCTTGTTAAACTCATAGGGTATTGCTCAGCATCTGACAATAGACTTCTTGTTTACGAGTTTATGCCCAAGGGAAGTTTGGAGAATCATTTGTTTAGGAAAGGTGTACAGCCTATACCATGGGCTATGCGGATGAATATTGCAATTGATGTTGCAAGGGGGTTGTCCTTTTTACATAGTTTAGATGCTAATGTTATCTACCGTGACTTGAAAGCTTCCAACATTCTACTTGATTCAGATTTCAGTGCAAAGCTATCAGATTTTGGTTTAGCAAGGGACGGTCCTACTGGAGACAACACTCATGTTTCAACCAGAGTCGTGGGAACTAGAGGCTATGCTGCACCAGAATATGTTGCTACAGGTGACTGTACCTTTCAATTGCATCCCCAACATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

278

Amino Acids

30.41

Weight (kDa)

8.85

Isoelectric Point (pI)

23.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	85 - 266	1.7e-35	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	86 - 270	1.8e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670
malus_domestica	MD03G1163900.v1.1
prunus_persica	Prupe.6G156700_v2.0.a1
pyrus_communis	pycom5153684g00330
rosa_chinensis	RchiOBHm_Chr5g0050011
rosa_laevigata	RLG00000034680
rosa_multiflora	Rmu_sc0000333.1_g000012
rosa_roxburghii	Rroxscaffold_1G00031130
rosa_rugosa	Rorug05G0256700 Rorug05G0256800
rosa_samantha	Rh5AG329800 Rh5BG340400 Rh5CG366600 Rh5DG353000
rosa_wichuraiana	Rw5G031130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	137, 338
AccI	GTMKAC	1 cut(s)	259
AciI	CCGC	2 cut(s)	247, 568
AfaI	GTAC	4 cut(s)	76, 83, 546, 808
AfiI	CCNNNNNNNGG	3 cut(s)	71, 137, 338
AflII	CTTAAG	1 cut(s)	200
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	5 cut(s)	292, 383, 649, 747, 815
AjnI	CCWGG	3 cut(s)	67, 120, 331
AluBI	AGCT	5 cut(s)	155, 176, 378, 653, 691
AluI	AGCT	5 cut(s)	155, 176, 378, 653, 691
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	723
AlwNI	CAGNNNCTG	2 cut(s)	338, 473
ApeKI	GCWGC	2 cut(s)	173, 776
Asp700I	GAANNNNTTC	1 cut(s)	378
AspS9I	GGNCC	2 cut(s)	140, 719
AsuHPI	GGTGA	2 cut(s)	422, 812
AvaII	GGWCC	2 cut(s)	140, 719
BaeI	ACNNNNGTAYC	2 cut(s)	171, 204
BbsI	GAAGAC	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	185, 763
BciT130I	CCWGG	3 cut(s)	69, 122, 333
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	4 cut(s)	192, 237, 327, 765
BfmI	CTRYAG	1 cut(s)	795
BfrI	CTTAAG	1 cut(s)	200
BisI	GCNGC	2 cut(s)	174, 777
BlpI	GCTNAGC	1 cut(s)	466
BlsI	GCNGC	2 cut(s)	175, 778
Bme1390I	CCNGG	3 cut(s)	69, 122, 333
Bme18I	GGWCC	2 cut(s)	140, 719
BmgT120I	GGNCC	2 cut(s)	140, 719
BmiI	GGNNCC	2 cut(s)	142, 321
BmrFI	CCNGG	3 cut(s)	69, 122, 333
BmsI	GCATC	5 cut(s)	119, 295, 479, 613, 829
BpiI	GAAGAC	1 cut(s)	280
BpmI	CTGGAG	2 cut(s)	90, 747
Bpu1102I	GCTNAGC	1 cut(s)	466
BpuEI	CTTGAG	2 cut(s)	209, 350
BsaJI	CCNNGG	3 cut(s)	315, 507, 557
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 137, 338
Bse1I	ACTGG	2 cut(s)	343, 730
BseBI	CCWGG	3 cut(s)	69, 122, 333
BseDI	CCNNGG	3 cut(s)	315, 507, 557
BseGI	GGATG	3 cut(s)	110, 576, 820
BseLI	CCNNNNNNNGG	3 cut(s)	71, 137, 338
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	2 cut(s)	343, 730
BseXI	GCAGC	2 cut(s)	185, 763
BsgI	GTGCAG	1 cut(s)	762
BsiHKAI	GWGCWC	1 cut(s)	37
BslFI	GGGAC	3 cut(s)	47, 126, 728
BslI	CCNNNNNNNGG	3 cut(s)	71, 137, 338
BsmAI	GTCTC	1 cut(s)	723
BsmFI	GGGAC	3 cut(s)	47, 126, 728
BsmI	GAATGC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp1407I	TGTACA	1 cut(s)	544
Bsp143I	GATC	1 cut(s)	220
Bsp1720I	GCTNAGC	1 cut(s)	466
Bsp19I	CCATGG	1 cut(s)	557
BspACI	CCGC	2 cut(s)	247, 568
BspCNI	CTCAG	1 cut(s)	479
BspLI	GGNNCC	2 cut(s)	142, 321
BspTI	CTTAAG	1 cut(s)	200
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	2 cut(s)	343, 730
BssECI	CCNNGG	3 cut(s)	315, 507, 557
BssMI	GATC	1 cut(s)	220
BssT1I	CCWWGG	3 cut(s)	315, 507, 557
Bst2UI	CCWGG	3 cut(s)	69, 122, 333
Bst4CI	ACNGT	3 cut(s)	641, 719, 806
BstAFI	CTTAAG	1 cut(s)	200
BstAPI	GCANNNNNTGC	2 cut(s)	32, 170
BstAUI	TGTACA	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	1 cut(s)	466
BstDSI	CCRYGG	1 cut(s)	557
BstENI	CCTNNNNNAGG	1 cut(s)	69
BstF5I	GGATG	3 cut(s)	110, 576, 820
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 161, 170
BstNI	CCWGG	3 cut(s)	69, 122, 333
BstNSI	RCATGY	1 cut(s)	186
BstSCI	CCNGG	3 cut(s)	67, 120, 331
BstSFI	CTRYAG	1 cut(s)	795
BstV1I	GCAGC	2 cut(s)	185, 763
BstV2I	GAAGAC	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	757
BtgI	CCRYGG	1 cut(s)	557
BtsCI	GGATG	3 cut(s)	110, 576, 820
BtsIMutI	CAGTG	1 cut(s)	688
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	2 cut(s)	338, 473
Cfr13I	GGNCC	2 cut(s)	140, 719
Csp6I	GTAC	4 cut(s)	75, 82, 545, 807
CviAII	CATG	5 cut(s)	38, 183, 434, 558, 740
CviQI	GTAC	4 cut(s)	75, 82, 545, 807
DdeI	CTNAG	1 cut(s)	466
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
DraI	TTTAAA	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	236
Eco130I	CCWWGG	3 cut(s)	315, 507, 557
Eco47I	GGWCC	2 cut(s)	140, 719
EcoNI	CCTNNNNNAGG	1 cut(s)	69
EcoRII	CCWGG	3 cut(s)	67, 120, 331
EcoT14I	CCWWGG	3 cut(s)	315, 507, 557
ErhI	CCWWGG	3 cut(s)	315, 507, 557
FaeI	CATG	5 cut(s)	41, 186, 437, 561, 743
FaqI	GGGAC	3 cut(s)	47, 126, 728
FatI	CATG	5 cut(s)	37, 182, 433, 557, 739
FblI	GTMKAC	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	174, 777
FokI	GGATG	3 cut(s)	97, 583, 807
Fsp4HI	GCNGC	2 cut(s)	174, 777
FspBI	CTAG	4 cut(s)	192, 237, 327, 765
GluI	GCNGC	2 cut(s)	174, 777
GsuI	CTGGAG	2 cut(s)	90, 747
Hin1II	CATG	5 cut(s)	41, 186, 437, 561, 743
HindIII	AAGCTT	2 cut(s)	376, 651
HinfI	GANTC	3 cut(s)	523, 671, 753
HphI	GGTGA	2 cut(s)	422, 812
Hpy166II	GTNNAC	4 cut(s)	260, 412, 493, 545
Hpy188I	TCNGA	3 cut(s)	475, 676, 697
Hpy188III	TCNNGA	2 cut(s)	226, 358
Hpy8I	GTNNAC	4 cut(s)	260, 412, 493, 545
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	3 cut(s)	641, 719, 806
HpyCH4V	TGCA	8 cut(s)	173, 308, 404, 581, 593, 686, 779, 820
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 161, 170
HpyF3I	CTNAG	1 cut(s)	466
Hsp92II	CATG	5 cut(s)	41, 186, 437, 561, 743
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	2 cut(s)	185, 763
LweI	GCATC	5 cut(s)	119, 295, 479, 613, 829
MaeI	CTAG	4 cut(s)	192, 237, 327, 765
MaeIII	GTNAC	3 cut(s)	386, 641, 800
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	2 cut(s)	36, 280
MfeI	CAATTG	2 cut(s)	582, 815
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	2 cut(s)	582, 815
MlyI	GAGTC	1 cut(s)	762
MmeI	TCCRAC	3 cut(s)	72, 141, 681
MnlI	CCTC	7 cut(s)	65, 75, 124, 262, 266, 354, 761
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	4 cut(s)	18, 201, 447, 835
MspA1I	CMGCKG	1 cut(s)	176
MspCI	CTTAAG	1 cut(s)	200
MspR9I	CCNGG	3 cut(s)	69, 122, 333
MunI	CAATTG	2 cut(s)	582, 815
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	3 cut(s)	69, 122, 333
MwoI	GCNNNNNNNGC	3 cut(s)	32, 161, 170
NcoI	CCATGG	1 cut(s)	557
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	5 cut(s)	41, 186, 437, 561, 743
NlaIV	GGNNCC	2 cut(s)	142, 321
NmuCI	GTSAC	3 cut(s)	386, 641, 800
NspI	RCATGY	1 cut(s)	186
PciI	ACATGT	1 cut(s)	182
PctI	GAATGC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	523, 671
PflMI	CCANNNNNTGG	2 cut(s)	137, 338
PfoI	TCCNGGA	1 cut(s)	67
PkrI	GCNGC	2 cut(s)	175, 778
PleI	GAGTC	1 cut(s)	761
PpsI	GAGTC	1 cut(s)	761
PscI	ACATGT	1 cut(s)	182
Psp6I	CCWGG	3 cut(s)	67, 120, 331
PspGI	CCWGG	3 cut(s)	67, 120, 331
PspN4I	GGNNCC	2 cut(s)	142, 321
PspPI	GGNCC	2 cut(s)	140, 719
PstNI	CAGNNNCTG	2 cut(s)	338, 473
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	4 cut(s)	76, 83, 546, 808
RsaNI	GTAC	4 cut(s)	75, 82, 545, 807
SaqAI	TTAA	4 cut(s)	18, 201, 447, 835
SatI	GCNGC	2 cut(s)	174, 777
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	2 cut(s)	140, 719
SchI	GAGTC	1 cut(s)	762
ScrFI	CCNGG	3 cut(s)	69, 122, 333
SduI	GDGCHC	1 cut(s)	37
SfaNI	GCATC	5 cut(s)	119, 295, 479, 613, 829
SfcI	CTRYAG	1 cut(s)	795
SinI	GGWCC	2 cut(s)	140, 719
SmlI	CTYRAG	3 cut(s)	200, 224, 365
SmoI	CTYRAG	3 cut(s)	200, 224, 365
Sse9I	AATT	2 cut(s)	582, 815
SsiI	CCGC	2 cut(s)	247, 568
SspI	AATATT	1 cut(s)	577
SspMI	CTAG	4 cut(s)	192, 237, 327, 765
StyD4I	CCNGG	3 cut(s)	67, 120, 331
StyI	CCWWGG	3 cut(s)	315, 507, 557
TaaI	ACNGT	3 cut(s)	641, 719, 806
TasI	AATT	2 cut(s)	582, 815
TatI	WGTACW	2 cut(s)	81, 544
TfiI	GAWTC	2 cut(s)	523, 671
Tru1I	TTAA	4 cut(s)	18, 201, 447, 835
Tru9I	TTAA	4 cut(s)	18, 201, 447, 835
TscAI	CASTG	1 cut(s)	688
TseFI	GTSAC	3 cut(s)	386, 641, 800
TseI	GCWGC	2 cut(s)	173, 776
Tsp45I	GTSAC	3 cut(s)	386, 641, 800
TspDTI	ATGAA	3 cut(s)	205, 450, 587
TspRI	CASTG	1 cut(s)	688
Van91I	CCANNNNNTGG	2 cut(s)	137, 338
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	140, 719
XagI	CCTNNNNNAGG	1 cut(s)	69
XceI	RCATGY	1 cut(s)	186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XmiI	GTMKAC	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	4 cut(s)	192, 237, 327, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.