Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010544

Physical Location & Seq

Genomic Coordinates Reverse (-)

13907736 .. 13912009

Gene Structure 4274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G156700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGATGGGAAACTGCTGTAGAAAATCTGCCAAGTGTGCTCATGCTTCTTCCATCAACTTCTCTGGAAGTACAAAGTCTAATGCCAAGGGACAGCTGGATACAGCCTCCTCCATCCAAGAAACGCCATCAGGAGGTTTGAACAAAGCTTTAATAGTACCCAAGGCTGATACATCTGTCCCTAGCAGCCTCAAGTCCTTCAGTTTCAGTGATCTCAAGAATGCTACTAAGAACTTCCGGTCAGAGAGTCTGCTCGGAGAGGGAGGGTTTGGATGGGTTTTCAAAGGATGGATTGATGCAAACACCTTTGCTCCCACTAAACCTGGAACAGGGTTAGTGGTGGCTATCAAGAGACTCAAGCGAGAAAGCTTTCAAGGCCACAAGGAGTGGCTCGCAGAAGTTAACTATCTTGGTCAGCTTCACCATGAAAATCTTGTGAAACTCATAGGGTATTGCTCAGAATCTGACAATAGACTTCTAGTTTATGAGTTCATGCCTAAGGGAAGCTTGGAGAATCATTTGTTTAGAAAAGGTGTTCAACCCATCAGTTGGGCTGTGCGGATGAATATTGCAATTGATGTGGCAAGGGGGCTGTCCTTCCTACATAGTTTAGATGCTAATGTTATCTATCGTGACTTGAAAGCTTCAAACATTCTACTTGATTCAGATTTCAATGCTAGGCTTTCGGATTTTGGGTTAGCAAGAGATGGTCCTACTGGAGACAACACTCATGTTTCAACCAGGGTGGTTGGAACTCGAGGCTATGCTGCACCAGAATATGTTGCTACAGGTCACTTGACACCAAAGAGTGATGTGTATAGCTTCGGGGTAGTGTTGTTAGAGCTACTAACAGGAAGACGAGCAATGGATGATGAGAGGGCTGGGAGTGTTGAGGAAACATTGGTGGATTGGGCAAAGCCATTCTTAAGTGATACAAAACGAGTCTTAAGAATCATGGACACAAGGTTGGGAGGTCAATACCCCAAGAAAGCAGCACAAACTGCAGCTGAACTTACTTTACAGTGCCTCCATACAGACCCAAAGTACAGGCCACTCATGATTGATGTTCTAGCCACATTGGAACGCCTCCACACAAAGAACACATTACGAACTCAACCACATAAACCAGAGCATCATGGGGCCAAGCATTTGAACCATCCTCACAGGATAACAAATTCAAACACAAAATTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

398

Amino Acids

43.87

Weight (kDa)

9.33

Isoelectric Point (pI)

21.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670
malus_domestica	MD03G1163900.v1.1
prunus_persica	Prupe.6G156700_v2.0.a1
pyrus_communis	pycom5153684g00330
rosa_chinensis	RchiOBHm_Chr5g0050011
rosa_laevigata	RLG00000034680
rosa_multiflora	Rmu_sc0000333.1_g000012
rosa_roxburghii	Rroxscaffold_1G00031130
rosa_rugosa	Rorug05G0256700 Rorug05G0256800
rosa_samantha	Rh5AG329800 Rh5BG340400 Rh5CG366600 Rh5DG353000
rosa_wichuraiana	Rw5G031130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	546
AciI	CCGC	1 cut(s)	556
AcsI	RAATTY	1 cut(s)	1171
AcuI	CTGAAG	1 cut(s)	181
AfaI	GTAC	3 cut(s)	70, 156, 1043
AfiI	CCNNNNNNNGG	3 cut(s)	131, 326, 546
AflII	CTTAAG	2 cut(s)	922, 943
AjnI	CCWGG	2 cut(s)	319, 737
AluBI	AGCT	9 cut(s)	94, 146, 366, 415, 504, 641, 819, 841, 1004
AluI	AGCT	9 cut(s)	94, 146, 366, 415, 504, 641, 819, 841, 1004
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	2 cut(s)	343, 711
AlwNI	CAGNNNCTG	1 cut(s)	461
Ama87I	CYCGRG	1 cut(s)	753
AoxI	GGCC	3 cut(s)	373, 1046, 1137
ApeKI	GCWGC	4 cut(s)	183, 764, 989, 1001
ApoI	RAATTY	1 cut(s)	1171
Asp700I	GAANNNNTTC	1 cut(s)	366
AspS9I	GGNCC	2 cut(s)	707, 1137
AsuHPI	GGTGA	1 cut(s)	410
AvaI	CYCGRG	1 cut(s)	753
AvaII	GGWCC	1 cut(s)	707
AxyI	CCTNAGG	1 cut(s)	495
BaeI	ACNNNNGTAYC	2 cut(s)	159, 192
BbsI	GAAGAC	1 cut(s)	859
Bbv12I	GWGCWC	1 cut(s)	40
BbvI	GCAGC	4 cut(s)	195, 751, 1001, 1013
BccI	CCATC	8 cut(s)	59, 119, 133, 264, 279, 548, 698, 1161
BciT130I	CCWGG	2 cut(s)	321, 739
BciVI	GTATCC	1 cut(s)	91
BcoDI	GTCTC	2 cut(s)	343, 711
BfaI	CTAG	4 cut(s)	180, 476, 675, 1067
BfmI	CTRYAG	3 cut(s)	16, 783, 999
BfrI	CTTAAG	2 cut(s)	922, 943
BfuI	GTATCC	1 cut(s)	91
BisI	GCNGC	4 cut(s)	184, 765, 990, 1002
BlsI	GCNGC	4 cut(s)	185, 766, 991, 1003
Bme1390I	CCNGG	2 cut(s)	321, 739
Bme18I	GGWCC	1 cut(s)	707
BmeT110I	CYCGRG	1 cut(s)	753
BmgT120I	GGNCC	2 cut(s)	707, 1137
BmiI	GGNNCC	1 cut(s)	1138
BmrFI	CCNGG	2 cut(s)	321, 739
BmsI	GCATC	3 cut(s)	283, 601, 1138
BpiI	GAAGAC	1 cut(s)	859
BpmI	CTGGAG	1 cut(s)	735
BpuEI	CTTGAG	3 cut(s)	173, 197, 338
BsaJI	CCNNGG	3 cut(s)	84, 159, 738
BsaWI	WCCGGW	1 cut(s)	234
BsaXI	ACNNNNNCTCC	4 cut(s)	292, 322, 1008, 1038
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 326, 546
Bse1I	ACTGG	1 cut(s)	718
Bse21I	CCTNAGG	1 cut(s)	495
Bse3DI	GCAATG	1 cut(s)	867
BseBI	CCWGG	2 cut(s)	321, 739
BseDI	CCNNGG	3 cut(s)	84, 159, 738
BseGI	GGATG	6 cut(s)	111, 275, 290, 564, 871, 1153
BseLI	CCNNNNNNNGG	3 cut(s)	131, 326, 546
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	1 cut(s)	718
BseRI	GAGGAG	1 cut(s)	97
BseXI	GCAGC	4 cut(s)	195, 751, 1001, 1013
BseYI	CCCAGC	1 cut(s)	878
BsgI	GTGCAG	1 cut(s)	750
BshFI	GGCC	3 cut(s)	375, 1048, 1139
BsiHKAI	GWGCWC	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	753
BsiSI	CCGG	1 cut(s)	235
BslFI	GGGAC	2 cut(s)	102, 161
BslI	CCNNNNNNNGG	3 cut(s)	131, 326, 546
BsmAI	GTCTC	2 cut(s)	343, 711
BsmFI	GGGAC	2 cut(s)	102, 161
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	3 cut(s)	375, 1048, 1139
BsoBI	CYCGRG	1 cut(s)	753
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	556
BspANI	GGCC	3 cut(s)	375, 1048, 1139
BspCNI	CTCAG	1 cut(s)	467
BspHI	TCATGA	1 cut(s)	1053
BspLI	GGNNCC	1 cut(s)	1138
BspMAI	CTGCAG	1 cut(s)	1003
BspTI	CTTAAG	2 cut(s)	922, 943
BsrDI	GCAATG	1 cut(s)	867
BsrI	ACTGG	1 cut(s)	718
BssECI	CCNNGG	3 cut(s)	84, 159, 738
BssMI	GATC	1 cut(s)	208
BssT1I	CCWWGG	2 cut(s)	84, 159
Bst2UI	CCWGG	2 cut(s)	321, 739
Bst4CI	ACNGT	1 cut(s)	1020
BstAFI	CTTAAG	2 cut(s)	922, 943
BstAPI	GCANNNNNTGC	1 cut(s)	998
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	3 cut(s)	225, 454, 495
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstF5I	GGATG	6 cut(s)	111, 275, 290, 564, 871, 1153
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	2 cut(s)	343, 711
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 372, 998
BstNI	CCWGG	2 cut(s)	321, 739
BstSCI	CCNGG	2 cut(s)	319, 737
BstSFI	CTRYAG	3 cut(s)	16, 783, 999
BstV1I	GCAGC	4 cut(s)	195, 751, 1001, 1013
BstV2I	GAAGAC	1 cut(s)	859
Bsu36I	CCTNAGG	1 cut(s)	495
BsuI	GTATCC	1 cut(s)	91
BsuRI	GGCC	3 cut(s)	375, 1048, 1139
BtsCI	GGATG	6 cut(s)	111, 275, 290, 564, 871, 1153
BtsIMutI	CAGTG	2 cut(s)	211, 1025
Cac8I	GCNNGC	1 cut(s)	390
CaiI	CAGNNNCTG	1 cut(s)	461
CciI	TCATGA	1 cut(s)	1053
Cfr13I	GGNCC	2 cut(s)	707, 1137
Csp6I	GTAC	3 cut(s)	69, 155, 1042
CspCI	CAANNNNNGTGG	4 cut(s)	558, 593, 723, 758
CviAII	CATG	7 cut(s)	41, 422, 490, 728, 952, 1054, 1133
CviQI	GTAC	3 cut(s)	69, 155, 1042
DdeI	CTNAG	3 cut(s)	225, 454, 495
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
Eco130I	CCWWGG	2 cut(s)	84, 159
Eco47I	GGWCC	1 cut(s)	707
Eco57I	CTGAAG	1 cut(s)	181
Eco81I	CCTNAGG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	753
EcoNI	CCTNNNNNAGG	1 cut(s)	324
EcoRII	CCWGG	2 cut(s)	319, 737
EcoT14I	CCWWGG	2 cut(s)	84, 159
ErhI	CCWWGG	2 cut(s)	84, 159
FaeI	CATG	7 cut(s)	44, 425, 493, 731, 955, 1057, 1136
FalI	AAGNNNNNCTT	4 cut(s)	488, 520, 905, 937
FaqI	GGGAC	2 cut(s)	102, 161
FatI	CATG	7 cut(s)	40, 421, 489, 727, 951, 1053, 1132
Fnu4HI	GCNGC	4 cut(s)	184, 765, 990, 1002
FokI	GGATG	6 cut(s)	98, 282, 297, 571, 878, 1140
Fsp4HI	GCNGC	4 cut(s)	184, 765, 990, 1002
FspBI	CTAG	4 cut(s)	180, 476, 675, 1067
GluI	GCNGC	4 cut(s)	184, 765, 990, 1002
GsaI	CCCAGC	1 cut(s)	882
GsuI	CTGGAG	1 cut(s)	735
HaeIII	GGCC	3 cut(s)	375, 1048, 1139
HapII	CCGG	1 cut(s)	235
Hin1II	CATG	7 cut(s)	44, 425, 493, 731, 955, 1057, 1136
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HindIII	AAGCTT	4 cut(s)	144, 364, 502, 639
HinfI	GANTC	7 cut(s)	244, 351, 458, 511, 659, 939, 948
HpaI	GTTAAC	1 cut(s)	400
HpaII	CCGG	1 cut(s)	235
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	6 cut(s)	241, 254, 457, 463, 664, 685
Hpy188III	TCNNGA	6 cut(s)	63, 129, 214, 346, 629, 1054
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	2 cut(s)	205, 604
HpyCH4III	ACNGT	1 cut(s)	1020
HpyCH4V	TGCA	4 cut(s)	296, 569, 767, 1001
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 372, 998
HpyF3I	CTNAG	3 cut(s)	225, 454, 495
Hsp92II	CATG	7 cut(s)	44, 425, 493, 731, 955, 1057, 1136
KspAI	GTTAAC	1 cut(s)	400
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	4 cut(s)	195, 751, 1001, 1013
LweI	GCATC	3 cut(s)	283, 601, 1138
MaeI	CTAG	4 cut(s)	180, 476, 675, 1067
MaeIII	GTNAC	2 cut(s)	629, 788
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	2 cut(s)	39, 864
MfeI	CAATTG	1 cut(s)	570
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	3 cut(s)	570, 1171, 1184
MlyI	GAGTC	3 cut(s)	253, 345, 948
MmeI	TCCRAC	1 cut(s)	727
MroXI	GAANNNNTTC	1 cut(s)	366
MseI	TTAA	4 cut(s)	149, 399, 923, 944
MspA1I	CMGCKG	2 cut(s)	94, 1004
MspCI	CTTAAG	2 cut(s)	922, 943
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	2 cut(s)	321, 739
MunI	CAATTG	1 cut(s)	570
Mva1269I	GAATGC	1 cut(s)	223
MvaI	CCWGG	2 cut(s)	321, 739
MwoI	GCNNNNNNNGC	3 cut(s)	35, 372, 998
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	7 cut(s)	44, 425, 493, 731, 955, 1057, 1136
NlaIV	GGNNCC	1 cut(s)	1138
NmuCI	GTSAC	2 cut(s)	629, 788
PaeR7I	CTCGAG	1 cut(s)	753
PagI	TCATGA	1 cut(s)	1053
PctI	GAATGC	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	4 cut(s)	458, 511, 659, 948
PflMI	CCANNNNNTGG	1 cut(s)	546
PkrI	GCNGC	4 cut(s)	185, 766, 991, 1003
PleI	GAGTC	3 cut(s)	252, 345, 947
PpsI	GAGTC	3 cut(s)	252, 345, 947
Psp6I	CCWGG	2 cut(s)	319, 737
PspFI	CCCAGC	1 cut(s)	878
PspGI	CCWGG	2 cut(s)	319, 737
PspN4I	GGNNCC	1 cut(s)	1138
PspPI	GGNCC	2 cut(s)	707, 1137
PspXI	VCTCGAGB	1 cut(s)	753
PsrI	GAACNNNNNNTAC	2 cut(s)	999, 1031
PstI	CTGCAG	1 cut(s)	1003
PstNI	CAGNNNCTG	1 cut(s)	461
PvuII	CAGCTG	2 cut(s)	94, 1004
RsaI	GTAC	3 cut(s)	70, 156, 1043
RsaNI	GTAC	3 cut(s)	69, 155, 1042
SaqAI	TTAA	4 cut(s)	149, 399, 923, 944
SatI	GCNGC	4 cut(s)	184, 765, 990, 1002
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	2 cut(s)	707, 1137
SchI	GAGTC	3 cut(s)	253, 345, 948
ScrFI	CCNGG	2 cut(s)	321, 739
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	3 cut(s)	283, 601, 1138
SfcI	CTRYAG	3 cut(s)	16, 783, 999
Sfr274I	CTCGAG	1 cut(s)	753
SinI	GGWCC	1 cut(s)	707
SlaI	CTCGAG	1 cut(s)	753
SmlI	CTYRAG	6 cut(s)	188, 212, 353, 753, 922, 943
SmoI	CTYRAG	6 cut(s)	188, 212, 353, 753, 922, 943
Sse9I	AATT	3 cut(s)	570, 1171, 1184
SsiI	CCGC	1 cut(s)	556
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	4 cut(s)	180, 476, 675, 1067
StyD4I	CCNGG	2 cut(s)	319, 737
StyI	CCWWGG	2 cut(s)	84, 159
TaaI	ACNGT	1 cut(s)	1020
TaqI	TCGA	1 cut(s)	754
TasI	AATT	3 cut(s)	570, 1171, 1184
TatI	WGTACW	2 cut(s)	68, 1041
TfiI	GAWTC	4 cut(s)	458, 511, 659, 948
Tru1I	TTAA	4 cut(s)	149, 399, 923, 944
Tru9I	TTAA	4 cut(s)	149, 399, 923, 944
TscAI	CASTG	2 cut(s)	211, 1025
TseFI	GTSAC	2 cut(s)	629, 788
TseI	GCWGC	4 cut(s)	183, 764, 989, 1001
Tsp45I	GTSAC	2 cut(s)	629, 788
TspDTI	ATGAA	3 cut(s)	438, 478, 575
TspRI	CASTG	2 cut(s)	211, 1025
Van91I	CCANNNNNTGG	1 cut(s)	546
Vha464I	CTTAAG	2 cut(s)	922, 943
VpaK11BI	GGWCC	1 cut(s)	707
XagI	CCTNNNNNAGG	1 cut(s)	324
XapI	RAATTY	1 cut(s)	1171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XhoI	CTCGAG	1 cut(s)	753
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	4 cut(s)	180, 476, 675, 1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.