Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010544

Physical Location & Seq

Genomic Coordinates Forward (+)

20441803 .. 20446772

Gene Structure 4970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1163900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGATGGGAAACTGCTGCAGAAAATCTACCAAGTGTGCTCATGCTTCTTCCATCAACTTCTCTGGAAGTACAAAGTCTAATGGCAAGCAACAGATGGATAGTAGCTCTTGCTCGCAGCAGTCAACGTCTGGGAATTTGAATCAAGCTTTAGTAGCATCCAAAGCTGATATATCCGTCCCTACCAACCTCAAGTCCTTCAGTTTCAGTGATCTCAAAAATGCTACTAGGAACTTCCGCCCAGAGAGTCTGCTCGGAGAGGGAGGGTTTGGGTGGGTATATAAAGGATGGATTGATGCAAACACATTAGCTCCCACTAAACCTGGAACTGGGTTAGTGGTGGCCATCAAGAGGCTCAAGCGAGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCAGAAGTGAACTATCTTGGTCAGCTTCGCCATGAAAATCTTGTGAAACTCATAGGGTATTGCTCAGAATCTGACAACAGACTTCTGGTTTATGAGTTCATGCCAAGGGGAAGTTTGGAGAATCATTTGTTTAGAAAAGGTGTTCAACCCATCACTTGGGCTGTTCGGATGAATATTGCAATTGATGTTGCACGGGGGTTATCTTTCTTACATAGTTTAGATGCTAATGTCATCTACCGTGACTTGAAAGCTTCCAACATTCTACTTGATTCGGATTTCAGTGCTCGGCTTTCAGATTTTGGGTTAGCAAGAGATGGTCCTACTGGAGATAATACTCATGTTTCAACCAGAGTGGTCGGAACTCGAGGCTACGCTGCACCAGAATATGTTGCTACAGGTCACTTGTCGCCAAAGAGTGATGTGTACAGCTTCGGGGTTGTTTTGTTAGAGCTTCTATCAGGGAGACGAGCAATGGACGATGAGAGAGCTGGGAGTGTCGAGGAAACATTGGTGGATTGGGCAAAGCCATTCATAAGTGATAGTAGACGAGTTTTAAGAATCATGGACACAAGGTTGGGGGGTCAATACTCGAAGAAAGCAGCCCAAGCTGCAGCTGAACTTGCTTTACAGTGCTTCCATACAGACCCAAAATATAGGCCACTCATGATTGATGTTCTAGCCACAATGGAACGAATCCACCCAAAGGACACGTTACGAACACAACAACACAAGTTAGACGATCATGGGGTCAAGCACTTGAACCATCATCCTCACACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

390

Amino Acids

43.15

Weight (kDa)

9.18

Isoelectric Point (pI)

26.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	81 - 356	1.1e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	82 - 356	9e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670
malus_domestica	MD03G1163900.v1.1
prunus_persica	Prupe.6G156700_v2.0.a1
pyrus_communis	pycom5153684g00330
rosa_chinensis	RchiOBHm_Chr5g0050011
rosa_laevigata	RLG00000034680
rosa_multiflora	Rmu_sc0000333.1_g000012
rosa_roxburghii	Rroxscaffold_1G00031130
rosa_rugosa	Rorug05G0256700 Rorug05G0256800
rosa_samantha	Rh5AG329800 Rh5BG340400 Rh5CG366600 Rh5DG353000
rosa_wichuraiana	Rw5G031130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	546
AccI	GTMKAC	1 cut(s)	934
AciI	CCGC	1 cut(s)	235
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	181
AfaI	GTAC	2 cut(s)	70, 815
AfiI	CCNNNNNNNGG	4 cut(s)	326, 348, 546, 1093
AflIII	ACRYGT	2 cut(s)	1098, 1164
AgsI	TTSAA	6 cut(s)	139, 371, 536, 637, 735, 1150
AjnI	CCWGG	1 cut(s)	319
Alw21I	GWGCWC	2 cut(s)	40, 676
Alw26I	GTCTC	1 cut(s)	847
AlwNI	CAGNNNCTG	1 cut(s)	461
Ama87I	CYCGRG	1 cut(s)	753
AoxI	GGCC	3 cut(s)	339, 373, 1046
ApeKI	GCWGC	6 cut(s)	15, 115, 764, 989, 998, 1001
ApoI	RAATTY	1 cut(s)	133
Asp700I	GAANNNNTTC	1 cut(s)	366
AspS9I	GGNCC	1 cut(s)	707
AvaI	CYCGRG	1 cut(s)	753
AvaII	GGWCC	1 cut(s)	707
BalI	TGGCCA	1 cut(s)	341
Bbv12I	GWGCWC	2 cut(s)	40, 676
BbvI	GCAGC	6 cut(s)	2, 127, 751, 985, 1001, 1013
BccI	CCATC	7 cut(s)	59, 88, 279, 350, 548, 698, 1161
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	847
BfaI	CTAG	2 cut(s)	225, 1067
BfmI	CTRYAG	3 cut(s)	16, 783, 999
BisI	GCNGC	6 cut(s)	16, 116, 765, 990, 999, 1002
BlsI	GCNGC	6 cut(s)	17, 117, 766, 991, 1000, 1003
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	707
BmeT110I	CYCGRG	1 cut(s)	753
BmgT120I	GGNCC	1 cut(s)	707
BmrFI	CCNGG	1 cut(s)	321
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	3 cut(s)	164, 283, 601
BmuI	ACTGGG	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	735
BpuEI	CTTGAG	2 cut(s)	173, 338
BsaAI	YACGTR	1 cut(s)	1167
BsaJI	CCNNGG	1 cut(s)	494
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bsc4I	CCNNNNNNNGG	4 cut(s)	326, 348, 546, 1093
Bse1I	ACTGG	2 cut(s)	331, 718
Bse3DI	GCAATG	1 cut(s)	867
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	494
BseGI	GGATG	4 cut(s)	155, 290, 564, 1156
BseLI	CCNNNNNNNGG	4 cut(s)	326, 348, 546, 1093
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	2 cut(s)	331, 718
BseXI	GCAGC	6 cut(s)	2, 127, 751, 985, 1001, 1013
BseYI	CCCAGC	1 cut(s)	878
BsgI	GTGCAG	1 cut(s)	750
BshFI	GGCC	3 cut(s)	341, 375, 1048
BsiHKAI	GWGCWC	2 cut(s)	40, 676
BsiHKCI	CYCGRG	1 cut(s)	753
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	4 cut(s)	326, 348, 546, 1093
BsmAI	GTCTC	1 cut(s)	847
BsmBI	CGTCTC	1 cut(s)	847
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	3 cut(s)	341, 375, 1048
BsoBI	CYCGRG	1 cut(s)	753
Bsp1286I	GDGCHC	2 cut(s)	40, 676
Bsp1407I	TGTACA	1 cut(s)	813
Bsp143I	GATC	2 cut(s)	208, 1129
BspACI	CCGC	1 cut(s)	235
BspANI	GGCC	3 cut(s)	341, 375, 1048
BspCNI	CTCAG	1 cut(s)	467
BspHI	TCATGA	1 cut(s)	1053
BspMAI	CTGCAG	2 cut(s)	20, 1003
BsrDI	GCAATG	1 cut(s)	867
BsrGI	TGTACA	1 cut(s)	813
BsrI	ACTGG	2 cut(s)	331, 718
BssECI	CCNNGG	1 cut(s)	494
BssMI	GATC	2 cut(s)	208, 1129
BssT1I	CCWWGG	1 cut(s)	494
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	629, 1020
BstAUI	TGTACA	1 cut(s)	813
BstBAI	YACGTR	1 cut(s)	1167
BstC8I	GCNNGC	3 cut(s)	86, 113, 390
BstDEI	CTNAG	1 cut(s)	454
BstF5I	GGATG	4 cut(s)	155, 290, 564, 1156
BstKTI	GATC	2 cut(s)	211, 1132
BstMAI	GTCTC	1 cut(s)	847
BstMBI	GATC	2 cut(s)	208, 1129
BstMWI	GCNNNNNNNGC	6 cut(s)	152, 161, 372, 995, 998, 1010
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	3 cut(s)	16, 783, 999
BstV1I	GCAGC	6 cut(s)	2, 127, 751, 985, 1001, 1013
BsuRI	GGCC	3 cut(s)	341, 375, 1048
BtsCI	GGATG	4 cut(s)	155, 290, 564, 1156
BtsIMutI	CAGTG	3 cut(s)	211, 676, 1025
Cac8I	GCNNGC	3 cut(s)	86, 113, 390
CaiI	CAGNNNCTG	1 cut(s)	461
CciI	TCATGA	1 cut(s)	1053
Cfr13I	GGNCC	1 cut(s)	707
Csp6I	GTAC	2 cut(s)	69, 814
CspCI	CAANNNNNGTGG	2 cut(s)	723, 758
CviAII	CATG	7 cut(s)	41, 422, 490, 728, 952, 1054, 1133
CviQI	GTAC	2 cut(s)	69, 814
DdeI	CTNAG	1 cut(s)	454
DpnI	GATC	2 cut(s)	210, 1131
DpnII	GATC	2 cut(s)	208, 1129
EaeI	YGGCCR	1 cut(s)	339
EciI	GGCGGA	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	494
Eco47I	GGWCC	1 cut(s)	707
Eco57I	CTGAAG	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	753
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	494
Esp3I	CGTCTC	1 cut(s)	847
FaeI	CATG	7 cut(s)	44, 425, 493, 731, 955, 1057, 1136
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	7 cut(s)	40, 421, 489, 727, 951, 1053, 1132
FblI	GTMKAC	1 cut(s)	934
Fnu4HI	GCNGC	6 cut(s)	16, 116, 765, 990, 999, 1002
FokI	GGATG	4 cut(s)	142, 297, 571, 1143
Fsp4HI	GCNGC	6 cut(s)	16, 116, 765, 990, 999, 1002
FspBI	CTAG	2 cut(s)	225, 1067
GluI	GCNGC	6 cut(s)	16, 116, 765, 990, 999, 1002
GsaI	CCCAGC	1 cut(s)	882
GsuI	CTGGAG	1 cut(s)	735
HaeIII	GGCC	3 cut(s)	341, 375, 1048
Hin1II	CATG	7 cut(s)	44, 425, 493, 731, 955, 1057, 1136
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HindIII	AAGCTT	3 cut(s)	144, 364, 639
HinfI	GANTC	7 cut(s)	139, 244, 458, 511, 659, 948, 1083
Hpy166II	GTNNAC	4 cut(s)	123, 400, 814, 935
Hpy188I	TCNGA	7 cut(s)	254, 457, 463, 558, 664, 685, 749
Hpy188III	TCNNGA	3 cut(s)	63, 346, 1054
Hpy8I	GTNNAC	4 cut(s)	123, 400, 814, 935
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	2 cut(s)	629, 1020
HpyCH4IV	ACGT	3 cut(s)	125, 1100, 1166
HpyCH4V	TGCA	7 cut(s)	18, 296, 392, 569, 581, 767, 1001
HpyF10VI	GCNNNNNNNGC	6 cut(s)	152, 161, 372, 995, 998, 1010
HpyF3I	CTNAG	1 cut(s)	454
HpySE526I	ACGT	3 cut(s)	125, 1100, 1166
Hsp92II	CATG	7 cut(s)	44, 425, 493, 731, 955, 1057, 1136
Kzo9I	GATC	2 cut(s)	208, 1129
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	6 cut(s)	2, 127, 751, 985, 1001, 1013
LweI	GCATC	3 cut(s)	164, 283, 601
MaeI	CTAG	2 cut(s)	225, 1067
MaeII	ACGT	3 cut(s)	125, 1100, 1166
MaeIII	GTNAC	3 cut(s)	629, 788, 1101
MalI	GATC	2 cut(s)	210, 1131
MboI	GATC	2 cut(s)	208, 1129
MboII	GAAGA	2 cut(s)	39, 994
MfeI	CAATTG	1 cut(s)	570
MhlI	GDGCHC	2 cut(s)	40, 676
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	2 cut(s)	133, 570
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	2 cut(s)	669, 727
MnlI	CCTC	7 cut(s)	197, 250, 254, 342, 749, 883, 1170
Mox20I	TGGCCA	1 cut(s)	341
MroXI	GAANNNNTTC	1 cut(s)	366
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	1 cut(s)	944
Msp20I	TGGCCA	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	1004
MspR9I	CCNGG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	6 cut(s)	152, 161, 372, 995, 998, 1010
NdeII	GATC	2 cut(s)	208, 1129
NlaIII	CATG	7 cut(s)	44, 425, 493, 731, 955, 1057, 1136
NmeAIII	GCCGAG	1 cut(s)	655
NmuCI	GTSAC	2 cut(s)	629, 788
PaeR7I	CTCGAG	1 cut(s)	753
PagI	TCATGA	1 cut(s)	1053
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	6 cut(s)	139, 458, 511, 659, 948, 1083
PflMI	CCANNNNNTGG	1 cut(s)	546
PkrI	GCNGC	6 cut(s)	17, 117, 766, 991, 1000, 1003
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
Ppu21I	YACGTR	1 cut(s)	1167
Psp6I	CCWGG	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	878
PspGI	CCWGG	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	707
PspXI	VCTCGAGB	1 cut(s)	753
PsrI	GAACNNNNNNTAC	2 cut(s)	999, 1031
PstI	CTGCAG	2 cut(s)	20, 1003
PstNI	CAGNNNCTG	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	1004
RsaI	GTAC	2 cut(s)	70, 815
RsaNI	GTAC	2 cut(s)	69, 814
SaqAI	TTAA	1 cut(s)	944
SatI	GCNGC	6 cut(s)	16, 116, 765, 990, 999, 1002
Sau3AI	GATC	2 cut(s)	208, 1129
Sau96I	GGNCC	1 cut(s)	707
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	2 cut(s)	40, 676
SfaNI	GCATC	3 cut(s)	164, 283, 601
SfcI	CTRYAG	3 cut(s)	16, 783, 999
Sfr274I	CTCGAG	1 cut(s)	753
SinI	GGWCC	1 cut(s)	707
SlaI	CTCGAG	1 cut(s)	753
SmlI	CTYRAG	3 cut(s)	188, 353, 753
SmoI	CTYRAG	3 cut(s)	188, 353, 753
Sse9I	AATT	2 cut(s)	133, 570
SsiI	CCGC	1 cut(s)	235
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	2 cut(s)	225, 1067
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	494
TaaI	ACNGT	2 cut(s)	629, 1020
TaiI	ACGT	3 cut(s)	128, 1103, 1169
TaqI	TCGA	3 cut(s)	754, 888, 980
TasI	AATT	2 cut(s)	133, 570
TatI	WGTACW	2 cut(s)	68, 813
TfiI	GAWTC	6 cut(s)	139, 458, 511, 659, 948, 1083
Tru1I	TTAA	1 cut(s)	944
Tru9I	TTAA	1 cut(s)	944
TscAI	CASTG	3 cut(s)	211, 676, 1025
TseFI	GTSAC	2 cut(s)	629, 788
TseI	GCWGC	6 cut(s)	15, 115, 764, 989, 998, 1001
Tsp45I	GTSAC	2 cut(s)	629, 788
TspDTI	ATGAA	4 cut(s)	438, 478, 575, 910
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	3 cut(s)	211, 676, 1025
Van91I	CCANNNNNTGG	1 cut(s)	546
VpaK11BI	GGWCC	1 cut(s)	707
XapI	RAATTY	1 cut(s)	133
XhoI	CTCGAG	1 cut(s)	753
XmiI	GTMKAC	1 cut(s)	934
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	2 cut(s)	225, 1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.