Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010544

Physical Location & Seq

Genomic Coordinates Reverse (-)

43634951 .. 43640956

Gene Structure 6006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00031130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGGGAACTTGTGCTTTAAACCAGCAAAGTGTGCTCATGCTTCTTCCAACAACTTCCCTGTCCCTCCTGGAGGTACAAAGTACAATGGGAAGGAACAGCAGGATTTAGCATCCTCCAACCAGGACAGACCATTGGGTGGTCCCAATACTAAAGCTCTAATAGCACCCAATGCAGCTGATACATGTAATGCTACTAGGAACTTCCGCCCAGATAGTCTACTTGGAGAGGGAGGGTTTGGGTGGGTCTTCAAAGGCTGGATTGATGCAAACACCTTAGCTCCCACTAGACCAGGAACTGGCTTGGTGGTGGCTATCAAGAGGCTCAAGCGAGAAAGCTTTCAAGGTCACAAGGAATGGCTTTTCTACACTTGGCAGGCAGAAGTGAACTATCTTGGTCAGTTTCACCATGAAAATCTTGTTAAACTCATAGGGTATTGCTCAGAATCTGACAATAGACTTCTTGTTTACGAGTTTATGCCCAAGGGAAGTTTGGAGAATCATTTGTTTAGGAAAGGTGTACAGCCTATACCATGGGCTATGCGAATGAATATTGCAATTGATGTTGCAAGGGGGTTGTCCTTTTTACATAGTTTAGATGCTAATGTTATCTACCGTGACTTGAAAGCTTCCAACATTCTACTTGATTCAGATTTCAGTGCAAAGCTATCAGATTTTGGTTTAGCAAGAGACGGTCCTACTGGAGACAACACTCATGTTTCAACTAGAGTCGTGGGAACTAGAGGCTATGCTGCACCAGAATATGTTGCTACAGGTCACTTGACACCAAAGAGTGATGTGTACAGCTTCGGTGTCGTTCTGTTAGAGCTACTATCAGGAAGACGAGCAATGGATGATGAGAGAGCTGGGAGTGTGGAGGAAACACTGGTGGATTGGGCAAAGCCATTTTTGATTGATAGTAAACGAGTTCTGAGAATCATGGACACAAGGTTGGGGGGTCAATATCCGAAGAAAGCTGCCCAAGCTGCAGCTGCACTTGCTTTGCAGTGTCTTCATACAGATCCAAAGAATAGGCCACTCATGATCGATGTTCTAGCCACATTGGAACGACTCCACTCAAAGGAGATAGTACGGACTCAACAACCGAAGCTAGGCCATGATGGGGTTAAGCATTCGAACCATCTCACAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

383

Amino Acids

42.34

Weight (kDa)

9.15

Isoelectric Point (pI)

25.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	71 - 351	4.1e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	72 - 352	1.5e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670
malus_domestica	MD03G1163900.v1.1
prunus_persica	Prupe.6G156700_v2.0.a1
pyrus_communis	pycom5153684g00330
rosa_chinensis	RchiOBHm_Chr5g0050011
rosa_laevigata	RLG00000034680
rosa_multiflora	Rmu_sc0000333.1_g000012
rosa_roxburghii	Rroxscaffold_1G00031130
rosa_rugosa	Rorug05G0256700 Rorug05G0256800
rosa_samantha	Rh5AG329800 Rh5BG340400 Rh5CG366600 Rh5DG353000
rosa_wichuraiana	Rw5G031130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	137, 296
AccI	GTMKAC	1 cut(s)	217
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	1 cut(s)	1013
AfaI	GTAC	5 cut(s)	76, 83, 519, 800, 1089
AfiI	CCNNNNNNNGG	6 cut(s)	71, 137, 296, 1078, 1109, 1120
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	4 cut(s)	250, 341, 622, 720
AjnI	CCWGG	3 cut(s)	67, 120, 289
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	2 cut(s)	681, 696
AlwI	GGATC	1 cut(s)	1013
AlwNI	CAGNNNCTG	2 cut(s)	296, 446
AoxI	GGCC	2 cut(s)	1031, 1111
ApeKI	GCWGC	6 cut(s)	173, 749, 974, 983, 986, 989
Asp700I	GAANNNNTTC	1 cut(s)	336
AspS9I	GGNCC	2 cut(s)	140, 692
AsuHPI	GGTGA	1 cut(s)	395
AsuII	TTCGAA	1 cut(s)	1133
AvaII	GGWCC	2 cut(s)	140, 692
BbsI	GAAGAC	3 cut(s)	238, 844, 1001
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	6 cut(s)	185, 736, 961, 970, 976, 998
BccI	CCATC	2 cut(s)	1112, 1146
BciT130I	CCWGG	3 cut(s)	69, 122, 291
BcoDI	GTCTC	2 cut(s)	681, 696
BfaI	CTAG	6 cut(s)	195, 285, 723, 738, 1052, 1109
BfmI	CTRYAG	2 cut(s)	768, 984
BisI	GCNGC	6 cut(s)	174, 750, 975, 984, 987, 990
BlsI	GCNGC	6 cut(s)	175, 751, 976, 985, 988, 991
Bme1390I	CCNGG	3 cut(s)	69, 122, 291
Bme18I	GGWCC	2 cut(s)	140, 692
BmgT120I	GGNCC	2 cut(s)	140, 692
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	3 cut(s)	69, 122, 291
BmsI	GCATC	3 cut(s)	119, 253, 586
BpiI	GAAGAC	3 cut(s)	238, 844, 1001
BpmI	CTGGAG	2 cut(s)	90, 720
Bpu10I	CCTNAGC	1 cut(s)	274
Bpu14I	TTCGAA	1 cut(s)	1133
BpuEI	CTTGAG	1 cut(s)	308
Bsa29I	ATCGAT	1 cut(s)	1044
BsaJI	CCNNGG	2 cut(s)	480, 530
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	6 cut(s)	71, 137, 296, 1078, 1109, 1120
Bse1I	ACTGG	3 cut(s)	301, 703, 888
Bse3DI	GCAATG	1 cut(s)	852
BseBI	CCWGG	3 cut(s)	69, 122, 291
BseCI	ATCGAT	1 cut(s)	1044
BseDI	CCNNGG	2 cut(s)	480, 530
BseGI	GGATG	2 cut(s)	110, 856
BseLI	CCNNNNNNNGG	6 cut(s)	71, 137, 296, 1078, 1109, 1120
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	2 cut(s)	453, 920
BseNI	ACTGG	3 cut(s)	301, 703, 888
BseXI	GCAGC	6 cut(s)	185, 736, 961, 970, 976, 998
BseYI	CCCAGC	1 cut(s)	863
BsgI	GTGCAG	2 cut(s)	735, 975
BshFI	GGCC	2 cut(s)	1033, 1113
BshVI	ATCGAT	1 cut(s)	1044
BsiHKAI	GWGCWC	1 cut(s)	37
BslFI	GGGAC	2 cut(s)	47, 126
BslI	CCNNNNNNNGG	6 cut(s)	71, 137, 296, 1078, 1109, 1120
BsmAI	GTCTC	2 cut(s)	681, 696
BsmBI	CGTCTC	1 cut(s)	681
BsmFI	GGGAC	2 cut(s)	47, 126
BsmI	GAATGC	1 cut(s)	1129
BsnI	GGCC	2 cut(s)	1033, 1113
Bsp119I	TTCGAA	1 cut(s)	1133
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp1407I	TGTACA	2 cut(s)	517, 798
Bsp143I	GATC	2 cut(s)	1018, 1041
Bsp19I	CCATGG	1 cut(s)	530
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	2 cut(s)	1033, 1113
BspCNI	CTCAG	2 cut(s)	452, 921
BspDI	ATCGAT	1 cut(s)	1044
BspHI	TCATGA	1 cut(s)	1038
BspLI	GGNNCC	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	988
BspPI	GGATC	1 cut(s)	1013
BspT104I	TTCGAA	1 cut(s)	1133
BsrDI	GCAATG	1 cut(s)	852
BsrGI	TGTACA	2 cut(s)	517, 798
BsrI	ACTGG	3 cut(s)	301, 703, 888
BssECI	CCNNGG	2 cut(s)	480, 530
BssMI	GATC	2 cut(s)	1018, 1041
BssT1I	CCWWGG	2 cut(s)	480, 530
Bst2UI	CCWGG	3 cut(s)	69, 122, 291
Bst4CI	ACNGT	2 cut(s)	614, 692
BstAPI	GCANNNNNTGC	2 cut(s)	32, 170
BstAUI	TGTACA	2 cut(s)	517, 798
BstBI	TTCGAA	1 cut(s)	1133
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	3 cut(s)	274, 439, 929
BstDSI	CCRYGG	1 cut(s)	530
BstENI	CCTNNNNNAGG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	110, 856
BstKTI	GATC	2 cut(s)	1021, 1044
BstMAI	GTCTC	2 cut(s)	681, 696
BstMBI	GATC	2 cut(s)	1018, 1041
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 161, 170, 980, 983, 989, 995
BstNI	CCWGG	3 cut(s)	69, 122, 291
BstNSI	RCATGY	1 cut(s)	186
BstSCI	CCNGG	3 cut(s)	67, 120, 289
BstSFI	CTRYAG	2 cut(s)	768, 984
BstV1I	GCAGC	6 cut(s)	185, 736, 961, 970, 976, 998
BstV2I	GAAGAC	3 cut(s)	238, 844, 1001
BstX2I	RGATCY	1 cut(s)	1018
BstYI	RGATCY	1 cut(s)	1018
Bsu15I	ATCGAT	1 cut(s)	1044
BsuRI	GGCC	2 cut(s)	1033, 1113
BsuTUI	ATCGAT	1 cut(s)	1044
BtgI	CCRYGG	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	110, 856
BtsI	GCAGTG	1 cut(s)	1010
BtsIMutI	CAGTG	3 cut(s)	661, 881, 1010
Cac8I	GCNNGC	1 cut(s)	375
CaiI	CAGNNNCTG	2 cut(s)	296, 446
CciI	TCATGA	1 cut(s)	1038
Cfr13I	GGNCC	2 cut(s)	140, 692
ClaI	ATCGAT	1 cut(s)	1044
Csp6I	GTAC	5 cut(s)	75, 82, 518, 799, 1088
CviAII	CATG	8 cut(s)	38, 183, 407, 531, 713, 937, 1039, 1115
CviQI	GTAC	5 cut(s)	75, 82, 518, 799, 1088
DdeI	CTNAG	3 cut(s)	274, 439, 929
DpnI	GATC	2 cut(s)	1020, 1043
DpnII	GATC	2 cut(s)	1018, 1041
DraI	TTTAAA	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	194
Eco130I	CCWWGG	2 cut(s)	480, 530
Eco47I	GGWCC	2 cut(s)	140, 692
EcoNI	CCTNNNNNAGG	1 cut(s)	69
EcoRII	CCWGG	3 cut(s)	67, 120, 289
EcoT14I	CCWWGG	2 cut(s)	480, 530
ErhI	CCWWGG	2 cut(s)	480, 530
Esp3I	CGTCTC	1 cut(s)	681
FaeI	CATG	8 cut(s)	41, 186, 410, 534, 716, 940, 1042, 1118
FaqI	GGGAC	2 cut(s)	47, 126
FatI	CATG	8 cut(s)	37, 182, 406, 530, 712, 936, 1038, 1114
FblI	GTMKAC	1 cut(s)	217
Fnu4HI	GCNGC	6 cut(s)	174, 750, 975, 984, 987, 990
FokI	GGATG	2 cut(s)	97, 863
Fsp4HI	GCNGC	6 cut(s)	174, 750, 975, 984, 987, 990
FspBI	CTAG	6 cut(s)	195, 285, 723, 738, 1052, 1109
GluI	GCNGC	6 cut(s)	174, 750, 975, 984, 987, 990
GsaI	CCCAGC	1 cut(s)	867
GsuI	CTGGAG	2 cut(s)	90, 720
HaeIII	GGCC	2 cut(s)	1033, 1113
Hin1II	CATG	8 cut(s)	41, 186, 410, 534, 716, 940, 1042, 1118
HindIII	AAGCTT	2 cut(s)	334, 624
HinfI	GANTC	7 cut(s)	443, 496, 644, 726, 933, 1068, 1093
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	6 cut(s)	218, 385, 466, 518, 799, 920
Hpy188I	TCNGA	6 cut(s)	442, 448, 649, 670, 930, 966
Hpy188III	TCNNGA	3 cut(s)	316, 834, 1039
Hpy8I	GTNNAC	6 cut(s)	218, 385, 466, 518, 799, 920
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	614, 692
HpyCH4V	TGCA	9 cut(s)	173, 266, 554, 566, 659, 752, 986, 992, 1003
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 161, 170, 980, 983, 989, 995
HpyF3I	CTNAG	3 cut(s)	274, 439, 929
Hsp92II	CATG	8 cut(s)	41, 186, 410, 534, 716, 940, 1042, 1118
Kzo9I	GATC	2 cut(s)	1018, 1041
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	6 cut(s)	185, 736, 961, 970, 976, 998
LweI	GCATC	3 cut(s)	119, 253, 586
MaeI	CTAG	6 cut(s)	195, 285, 723, 738, 1052, 1109
MaeIII	GTNAC	3 cut(s)	344, 614, 773
MalI	GATC	2 cut(s)	1020, 1043
MboI	GATC	2 cut(s)	1018, 1041
MboII	GAAGA	5 cut(s)	36, 238, 849, 979, 1001
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	1 cut(s)	1018
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	1 cut(s)	555
MlyI	GAGTC	3 cut(s)	735, 1062, 1087
MmeI	TCCRAC	3 cut(s)	72, 141, 654
MnlI	CCTC	8 cut(s)	65, 75, 124, 220, 224, 312, 734, 868
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	3 cut(s)	18, 420, 1125
MspA1I	CMGCKG	2 cut(s)	176, 989
MspR9I	CCNGG	3 cut(s)	69, 122, 291
MunI	CAATTG	1 cut(s)	555
Mva1269I	GAATGC	1 cut(s)	1129
MvaI	CCWGG	3 cut(s)	69, 122, 291
MwoI	GCNNNNNNNGC	7 cut(s)	32, 161, 170, 980, 983, 989, 995
NcoI	CCATGG	1 cut(s)	530
NdeII	GATC	2 cut(s)	1018, 1041
NlaIII	CATG	8 cut(s)	41, 186, 410, 534, 716, 940, 1042, 1118
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	3 cut(s)	344, 614, 773
NspI	RCATGY	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	1133
PagI	TCATGA	1 cut(s)	1038
PciI	ACATGT	1 cut(s)	182
PctI	GAATGC	1 cut(s)	1129
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	4 cut(s)	443, 496, 644, 933
PflMI	CCANNNNNTGG	2 cut(s)	137, 296
PfoI	TCCNGGA	1 cut(s)	67
PkrI	GCNGC	6 cut(s)	175, 751, 976, 985, 988, 991
PleI	GAGTC	3 cut(s)	734, 1062, 1087
PpsI	GAGTC	3 cut(s)	734, 1062, 1087
PscI	ACATGT	1 cut(s)	182
Psp6I	CCWGG	3 cut(s)	67, 120, 289
PspFI	CCCAGC	1 cut(s)	863
PspGI	CCWGG	3 cut(s)	67, 120, 289
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	2 cut(s)	140, 692
PstI	CTGCAG	1 cut(s)	988
PstNI	CAGNNNCTG	2 cut(s)	296, 446
PsuI	RGATCY	1 cut(s)	1018
PvuII	CAGCTG	2 cut(s)	176, 989
RsaI	GTAC	5 cut(s)	76, 83, 519, 800, 1089
RsaNI	GTAC	5 cut(s)	75, 82, 518, 799, 1088
SaqAI	TTAA	3 cut(s)	18, 420, 1125
SatI	GCNGC	6 cut(s)	174, 750, 975, 984, 987, 990
Sau3AI	GATC	2 cut(s)	1018, 1041
Sau96I	GGNCC	2 cut(s)	140, 692
SchI	GAGTC	3 cut(s)	735, 1062, 1087
ScrFI	CCNGG	3 cut(s)	69, 122, 291
SduI	GDGCHC	1 cut(s)	37
SfaNI	GCATC	3 cut(s)	119, 253, 586
SfcI	CTRYAG	2 cut(s)	768, 984
SfuI	TTCGAA	1 cut(s)	1133
SinI	GGWCC	2 cut(s)	140, 692
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	1 cut(s)	555
SsiI	CCGC	1 cut(s)	205
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	6 cut(s)	195, 285, 723, 738, 1052, 1109
StyD4I	CCNGG	3 cut(s)	67, 120, 289
StyI	CCWWGG	2 cut(s)	480, 530
TaaI	ACNGT	2 cut(s)	614, 692
TaqI	TCGA	2 cut(s)	1044, 1133
TasI	AATT	1 cut(s)	555
TatI	WGTACW	3 cut(s)	81, 517, 798
TfiI	GAWTC	4 cut(s)	443, 496, 644, 933
Tru1I	TTAA	3 cut(s)	18, 420, 1125
Tru9I	TTAA	3 cut(s)	18, 420, 1125
TscAI	CASTG	3 cut(s)	661, 888, 1010
TseFI	GTSAC	3 cut(s)	344, 614, 773
TseI	GCWGC	6 cut(s)	173, 749, 974, 983, 986, 989
Tsp45I	GTSAC	3 cut(s)	344, 614, 773
TspDTI	ATGAA	3 cut(s)	423, 560, 1001
TspGWI	ACGGA	1 cut(s)	1105
TspRI	CASTG	3 cut(s)	661, 888, 1010
Van91I	CCANNNNNTGG	2 cut(s)	137, 296
VpaK11BI	GGWCC	2 cut(s)	140, 692
XagI	CCTNNNNNAGG	1 cut(s)	69
XceI	RCATGY	1 cut(s)	186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XmiI	GTMKAC	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	6 cut(s)	195, 285, 723, 738, 1052, 1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.