Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0010544

Physical Location & Seq

Genomic Coordinates Forward (+)

50661760 .. 50667074

Gene Structure 5315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G031130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGGGAACTTGTGCTTTAAACCAGCGAAGTGTGCTCATGCTTCTTCCAACAACTTCCCTGTCCCTCCTGGAGGTACAAAGTACAATGGGAAGGAACAGCAGGATTTAGCATCCTCCAACCAGGACACACCATTGGGTGGTCCCAATACTAAAGCTCTAATAGCACCCAATGCAGTTGATACATGTGTTCCTAGCACCCTTAAGTCCTTTAGTTTCATTGATCTCAAGAATGCTACTAGGAACTTCCGCCCAGATAGTCTACTTGGAGAGGGAGGGTTTGGGTGGGTCTTCAAAGGCTGGATTGATGCAAACACCTTGGCTCCCACTAGACCAGGAACTGGCTTGGTGGTGGCTATCAAGAGGCTCAAGCGAGAAAGCTTTCAAGGTCACAAGGAATGGCTTGCAGAAGTGAACTATCTTGGTCAGTTTCACCATGAAAATCTTGTTAAACTCATAGGGTATTGCTCAGCATCTGACAATAGACTTCTTGTTTACGAGTTTATGCCCAAGGGAAGTTTGGAGAATCATTTGTTTAGGAAAGGTGTACAGCCTATACCATGGGCTATGCGGATGAATATTGCAATTGATGTTGCAAGGGGGTTGTCCTTTTTACATAGTTTAGATGCTAATGTTATCTACCGTGACTTGAAAGCTTCCAACATTCTACTTGATTCAGATTTCAGTGCAAAGCTATCAGATTTTGGTTTAGCAAGGGACGGTCCTACCGGAGACAACACTCATGTTTCAACCAGAGTCGTGGGAACTAGAGGCTATGCTGCCCCAGAATATGTTGCTACAGGTCACTTGACACCAAAGAGTGATGTGTACAGCTTCGGTGTCGTTCTGTTAGAGCTACTATCAGGAAGACGAGCAATGGATGATGAGAGAGCTGGGAGTGTGGAGGAAACACTGGTGGATTGGGCAAAGCCATTTTTGATTGATAGTAAACGAGTTCTGAGAATCATGGACACAAGGTTGGGGGGTCAATATCCGAAGAAAGCCGCCCAAGCTGCAGCCGCACTTGCTTTGCAGTGTCTTCATACAGATCCAAAGAATAGGCCACTCATGATCGATGTTCTAGCCACATTGGAACGACTCCACTCAAAGGAGATAGTGCGGACTCAACAACCTAAACTAACCCCTCATGGGGTTAAGCATTCGAACCATCTCACAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

392

Amino Acids

43.12

Weight (kDa)

9.3

Isoelectric Point (pI)

22.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	85 - 360	3.6e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	86 - 361	3.4e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670 FvH4_3g27670
malus_domestica	MD03G1163900.v1.1
prunus_persica	Prupe.6G156700_v2.0.a1
pyrus_communis	pycom5153684g00330
rosa_chinensis	RchiOBHm_Chr5g0050011
rosa_laevigata	RLG00000034680
rosa_multiflora	Rmu_sc0000333.1_g000012
rosa_roxburghii	Rroxscaffold_1G00031130
rosa_rugosa	Rorug05G0256700 Rorug05G0256800
rosa_samantha	Rh5AG329800 Rh5BG340400 Rh5CG366600 Rh5DG353000
rosa_wichuraiana	Rw5G031130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	137, 338
AccI	GTMKAC	1 cut(s)	259
AciI	CCGC	5 cut(s)	247, 568, 1002, 1017, 1117
AclWI	GGATC	1 cut(s)	1040
AfaI	GTAC	4 cut(s)	76, 83, 546, 827
AfiI	CCNNNNNNNGG	6 cut(s)	71, 137, 338, 1105, 1146, 1147
AflII	CTTAAG	1 cut(s)	200
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	4 cut(s)	292, 383, 649, 747
AjnI	CCWGG	3 cut(s)	67, 120, 331
AluBI	AGCT	8 cut(s)	155, 378, 653, 691, 831, 853, 890, 1010
AluI	AGCT	8 cut(s)	155, 378, 653, 691, 831, 853, 890, 1010
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	723
AlwI	GGATC	1 cut(s)	1040
AlwNI	CAGNNNCTG	2 cut(s)	338, 473
AoxI	GGCC	1 cut(s)	1058
ApeKI	GCWGC	3 cut(s)	776, 1010, 1013
Asp700I	GAANNNNTTC	1 cut(s)	378
AspS9I	GGNCC	2 cut(s)	140, 719
AsuHPI	GGTGA	1 cut(s)	422
AsuII	TTCGAA	1 cut(s)	1160
AvaII	GGWCC	2 cut(s)	140, 719
BaeI	ACNNNNGTAYC	2 cut(s)	171, 204
BbsI	GAAGAC	3 cut(s)	280, 871, 1028
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	763, 997, 1025
BccI	CCATC	1 cut(s)	1173
BciT130I	CCWGG	3 cut(s)	69, 122, 333
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	5 cut(s)	192, 237, 327, 765, 1079
BfmI	CTRYAG	2 cut(s)	795, 1011
BfrI	CTTAAG	1 cut(s)	200
BisI	GCNGC	5 cut(s)	777, 1002, 1011, 1014, 1017
BlpI	GCTNAGC	1 cut(s)	466
BlsI	GCNGC	5 cut(s)	778, 1003, 1012, 1015, 1018
Bme1390I	CCNGG	3 cut(s)	69, 122, 333
Bme18I	GGWCC	2 cut(s)	140, 719
BmgT120I	GGNCC	2 cut(s)	140, 719
BmiI	GGNNCC	2 cut(s)	142, 321
BmrFI	CCNGG	3 cut(s)	69, 122, 333
BmsI	GCATC	4 cut(s)	119, 295, 479, 613
BpiI	GAAGAC	3 cut(s)	280, 871, 1028
BpmI	CTGGAG	1 cut(s)	90
Bpu1102I	GCTNAGC	1 cut(s)	466
Bpu14I	TTCGAA	1 cut(s)	1160
BpuEI	CTTGAG	2 cut(s)	209, 350
Bsa29I	ATCGAT	1 cut(s)	1071
BsaJI	CCNNGG	3 cut(s)	315, 507, 557
BsaWI	WCCGGW	1 cut(s)	725
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	6 cut(s)	71, 137, 338, 1105, 1146, 1147
Bse1I	ACTGG	2 cut(s)	343, 915
Bse3DI	GCAATG	1 cut(s)	879
BseBI	CCWGG	3 cut(s)	69, 122, 333
BseCI	ATCGAT	1 cut(s)	1071
BseDI	CCNNGG	3 cut(s)	315, 507, 557
BseGI	GGATG	3 cut(s)	110, 576, 883
BseLI	CCNNNNNNNGG	6 cut(s)	71, 137, 338, 1105, 1146, 1147
BseMI	GCAATG	1 cut(s)	879
BseMII	CTCAG	2 cut(s)	480, 947
BseNI	ACTGG	2 cut(s)	343, 915
BseXI	GCAGC	3 cut(s)	763, 997, 1025
BseYI	CCCAGC	1 cut(s)	890
BshFI	GGCC	1 cut(s)	1060
BshVI	ATCGAT	1 cut(s)	1071
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	726
BslFI	GGGAC	3 cut(s)	47, 126, 728
BslI	CCNNNNNNNGG	6 cut(s)	71, 137, 338, 1105, 1146, 1147
BsmAI	GTCTC	1 cut(s)	723
BsmFI	GGGAC	3 cut(s)	47, 126, 728
BsmI	GAATGC	2 cut(s)	235, 1156
BsnI	GGCC	1 cut(s)	1060
Bsp119I	TTCGAA	1 cut(s)	1160
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp1407I	TGTACA	2 cut(s)	544, 825
Bsp143I	GATC	3 cut(s)	220, 1045, 1068
Bsp1720I	GCTNAGC	1 cut(s)	466
Bsp19I	CCATGG	1 cut(s)	557
BspACI	CCGC	5 cut(s)	247, 568, 1002, 1017, 1117
BspANI	GGCC	1 cut(s)	1060
BspCNI	CTCAG	2 cut(s)	479, 948
BspDI	ATCGAT	1 cut(s)	1071
BspHI	TCATGA	1 cut(s)	1065
BspLI	GGNNCC	2 cut(s)	142, 321
BspMAI	CTGCAG	1 cut(s)	1015
BspPI	GGATC	1 cut(s)	1040
BspT104I	TTCGAA	1 cut(s)	1160
BspTI	CTTAAG	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	879
BsrGI	TGTACA	2 cut(s)	544, 825
BsrI	ACTGG	2 cut(s)	343, 915
BssECI	CCNNGG	3 cut(s)	315, 507, 557
BssMI	GATC	3 cut(s)	220, 1045, 1068
BssT1I	CCWWGG	3 cut(s)	315, 507, 557
Bst2UI	CCWGG	3 cut(s)	69, 122, 333
Bst4CI	ACNGT	2 cut(s)	641, 719
BstAFI	CTTAAG	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstAUI	TGTACA	2 cut(s)	544, 825
BstBI	TTCGAA	1 cut(s)	1160
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	2 cut(s)	466, 956
BstDSI	CCRYGG	1 cut(s)	557
BstENI	CCTNNNNNAGG	1 cut(s)	69
BstF5I	GGATG	3 cut(s)	110, 576, 883
BstKTI	GATC	3 cut(s)	223, 1048, 1071
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	3 cut(s)	220, 1045, 1068
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 161, 170, 1007, 1010, 1016, 1022
BstNI	CCWGG	3 cut(s)	69, 122, 333
BstNSI	RCATGY	1 cut(s)	186
BstSCI	CCNGG	3 cut(s)	67, 120, 331
BstSFI	CTRYAG	2 cut(s)	795, 1011
BstV1I	GCAGC	3 cut(s)	763, 997, 1025
BstV2I	GAAGAC	3 cut(s)	280, 871, 1028
BstX2I	RGATCY	1 cut(s)	1045
BstXI	CCANNNNNNTGG	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	1045
Bsu15I	ATCGAT	1 cut(s)	1071
BsuRI	GGCC	1 cut(s)	1060
BsuTUI	ATCGAT	1 cut(s)	1071
BtgI	CCRYGG	1 cut(s)	557
BtsCI	GGATG	3 cut(s)	110, 576, 883
BtsI	GCAGTG	1 cut(s)	1037
BtsIMutI	CAGTG	3 cut(s)	688, 908, 1037
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	2 cut(s)	338, 473
CciI	TCATGA	1 cut(s)	1065
Cfr13I	GGNCC	2 cut(s)	140, 719
ClaI	ATCGAT	1 cut(s)	1071
Csp6I	GTAC	4 cut(s)	75, 82, 545, 826
CviAII	CATG	8 cut(s)	38, 183, 434, 558, 740, 964, 1066, 1145
CviQI	GTAC	4 cut(s)	75, 82, 545, 826
DdeI	CTNAG	2 cut(s)	466, 956
DpnI	GATC	3 cut(s)	222, 1047, 1070
DpnII	GATC	3 cut(s)	220, 1045, 1068
DraI	TTTAAA	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	236
Eco130I	CCWWGG	3 cut(s)	315, 507, 557
Eco47I	GGWCC	2 cut(s)	140, 719
EcoNI	CCTNNNNNAGG	1 cut(s)	69
EcoRII	CCWGG	3 cut(s)	67, 120, 331
EcoT14I	CCWWGG	3 cut(s)	315, 507, 557
ErhI	CCWWGG	3 cut(s)	315, 507, 557
FaeI	CATG	8 cut(s)	41, 186, 437, 561, 743, 967, 1069, 1148
FaqI	GGGAC	3 cut(s)	47, 126, 728
FatI	CATG	8 cut(s)	37, 182, 433, 557, 739, 963, 1065, 1144
FblI	GTMKAC	1 cut(s)	259
Fnu4HI	GCNGC	5 cut(s)	777, 1002, 1011, 1014, 1017
FokI	GGATG	3 cut(s)	97, 583, 890
Fsp4HI	GCNGC	5 cut(s)	777, 1002, 1011, 1014, 1017
FspBI	CTAG	5 cut(s)	192, 237, 327, 765, 1079
GluI	GCNGC	5 cut(s)	777, 1002, 1011, 1014, 1017
GsaI	CCCAGC	1 cut(s)	894
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	1060
HapII	CCGG	1 cut(s)	726
Hin1II	CATG	8 cut(s)	41, 186, 437, 561, 743, 967, 1069, 1148
HindIII	AAGCTT	2 cut(s)	376, 651
HinfI	GANTC	6 cut(s)	523, 671, 753, 960, 1095, 1120
HpaII	CCGG	1 cut(s)	726
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	6 cut(s)	260, 412, 493, 545, 826, 947
Hpy188I	TCNGA	5 cut(s)	475, 676, 697, 957, 993
Hpy188III	TCNNGA	4 cut(s)	226, 358, 861, 1066
Hpy8I	GTNNAC	6 cut(s)	260, 412, 493, 545, 826, 947
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	641, 719
HpyCH4V	TGCA	8 cut(s)	173, 308, 404, 581, 593, 686, 1013, 1030
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 161, 170, 1007, 1010, 1016, 1022
HpyF3I	CTNAG	2 cut(s)	466, 956
Hsp92II	CATG	8 cut(s)	41, 186, 437, 561, 743, 967, 1069, 1148
Kzo9I	GATC	3 cut(s)	220, 1045, 1068
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	3 cut(s)	763, 997, 1025
LweI	GCATC	4 cut(s)	119, 295, 479, 613
MaeI	CTAG	5 cut(s)	192, 237, 327, 765, 1079
MaeIII	GTNAC	3 cut(s)	386, 641, 800
MalI	GATC	3 cut(s)	222, 1047, 1070
MboI	GATC	3 cut(s)	220, 1045, 1068
MboII	GAAGA	5 cut(s)	36, 280, 876, 1006, 1028
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	1 cut(s)	1045
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	1 cut(s)	582
MlyI	GAGTC	3 cut(s)	762, 1089, 1114
MmeI	TCCRAC	3 cut(s)	72, 141, 681
MnlI	CCTC	9 cut(s)	65, 75, 124, 262, 266, 354, 761, 895, 1152
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	4 cut(s)	18, 201, 447, 1152
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	1 cut(s)	726
MspR9I	CCNGG	3 cut(s)	69, 122, 333
MunI	CAATTG	1 cut(s)	582
Mva1269I	GAATGC	2 cut(s)	235, 1156
MvaI	CCWGG	3 cut(s)	69, 122, 333
MwoI	GCNNNNNNNGC	7 cut(s)	32, 161, 170, 1007, 1010, 1016, 1022
NcoI	CCATGG	1 cut(s)	557
NdeII	GATC	3 cut(s)	220, 1045, 1068
NlaIII	CATG	8 cut(s)	41, 186, 437, 561, 743, 967, 1069, 1148
NlaIV	GGNNCC	2 cut(s)	142, 321
NmuCI	GTSAC	3 cut(s)	386, 641, 800
NspI	RCATGY	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	1160
PagI	TCATGA	1 cut(s)	1065
PciI	ACATGT	1 cut(s)	182
PctI	GAATGC	2 cut(s)	235, 1156
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	3 cut(s)	523, 671, 960
PflMI	CCANNNNNTGG	2 cut(s)	137, 338
PfoI	TCCNGGA	1 cut(s)	67
PkrI	GCNGC	5 cut(s)	778, 1003, 1012, 1015, 1018
PleI	GAGTC	3 cut(s)	761, 1089, 1114
PpsI	GAGTC	3 cut(s)	761, 1089, 1114
PscI	ACATGT	1 cut(s)	182
Psp6I	CCWGG	3 cut(s)	67, 120, 331
PspFI	CCCAGC	1 cut(s)	890
PspGI	CCWGG	3 cut(s)	67, 120, 331
PspN4I	GGNNCC	2 cut(s)	142, 321
PspPI	GGNCC	2 cut(s)	140, 719
PstI	CTGCAG	1 cut(s)	1015
PstNI	CAGNNNCTG	2 cut(s)	338, 473
PsuI	RGATCY	1 cut(s)	1045
RsaI	GTAC	4 cut(s)	76, 83, 546, 827
RsaNI	GTAC	4 cut(s)	75, 82, 545, 826
SaqAI	TTAA	4 cut(s)	18, 201, 447, 1152
SatI	GCNGC	5 cut(s)	777, 1002, 1011, 1014, 1017
Sau3AI	GATC	3 cut(s)	220, 1045, 1068
Sau96I	GGNCC	2 cut(s)	140, 719
SchI	GAGTC	3 cut(s)	762, 1089, 1114
ScrFI	CCNGG	3 cut(s)	69, 122, 333
SduI	GDGCHC	1 cut(s)	37
SfaNI	GCATC	4 cut(s)	119, 295, 479, 613
SfcI	CTRYAG	2 cut(s)	795, 1011
SfuI	TTCGAA	1 cut(s)	1160
SinI	GGWCC	2 cut(s)	140, 719
SmlI	CTYRAG	3 cut(s)	200, 224, 365
SmoI	CTYRAG	3 cut(s)	200, 224, 365
Sse9I	AATT	1 cut(s)	582
SsiI	CCGC	5 cut(s)	247, 568, 1002, 1017, 1117
SspI	AATATT	1 cut(s)	577
SspMI	CTAG	5 cut(s)	192, 237, 327, 765, 1079
StyD4I	CCNGG	3 cut(s)	67, 120, 331
StyI	CCWWGG	3 cut(s)	315, 507, 557
TaaI	ACNGT	2 cut(s)	641, 719
TaqI	TCGA	2 cut(s)	1071, 1160
TasI	AATT	1 cut(s)	582
TatI	WGTACW	3 cut(s)	81, 544, 825
TauI	GCSGC	2 cut(s)	1004, 1019
TfiI	GAWTC	3 cut(s)	523, 671, 960
Tru1I	TTAA	4 cut(s)	18, 201, 447, 1152
Tru9I	TTAA	4 cut(s)	18, 201, 447, 1152
TscAI	CASTG	3 cut(s)	688, 915, 1037
TseFI	GTSAC	3 cut(s)	386, 641, 800
TseI	GCWGC	3 cut(s)	776, 1010, 1013
Tsp45I	GTSAC	3 cut(s)	386, 641, 800
TspDTI	ATGAA	4 cut(s)	205, 450, 587, 1028
TspRI	CASTG	3 cut(s)	688, 915, 1037
Van91I	CCANNNNNTGG	2 cut(s)	137, 338
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	140, 719
XagI	CCTNNNNNAGG	1 cut(s)	69
XceI	RCATGY	1 cut(s)	186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XmiI	GTMKAC	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	5 cut(s)	192, 237, 327, 765, 1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.