FvH4_3g27960

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017270
Physical Location & Seq
Reverse (-)
20975892 .. 20980419
4528 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27960.t1

Sequence Viewer

Length: 756 bp
ATGGGTGAGATTCTTTATGCATGCGACGACTCTGACATGCAACTGATAGGGAAGTTCTTGAGCTTCGCTTCGAGAGGTGACAGAGTTGGACTGAACCAGATGTTGATCCAAGGCGTATCTCCTGATGTGCAAGACTACGACAACAGGACGGCGCTGCATCTGGCGGCGAGTGAGGGTCACACTCCCATTGTTGAGCTTCTTGTGTGCTACAGAGCCAATGTTAATCTCCAAGACCGATGGAAAAGAACGCCCTTGACAGATGCAAGACTCTATGGACATCGAGACATATGCAGAATTCTTGAAGTGAATGGAGGCAATGACTTTACCAGTCAGCTAATGACTGTTCGACATGAACATGATTCAAATGATGTTAAGTTTGACATGACGGAATTAGATACAGAACATTCATCAAAGGTTCAACAGGGTTGTTTTGGTGAATCTGAGAAGGTCAAGTGGCGTGGAATCTGGGTCGTAAAGACTGTTGTCAAGAGACACATACGTGCTCCAGTAACAATGATACTCTCTGCTAAGGATAACACTCTCCTACGGGAACTTAGACATCCCAATATCTTGCAATTTCTTGGTTCAATTGTGCAGCAAGAGGAGATGGTTCTTATTACCGAGTTGATACAGAAATGTACAAGTGGTGATCCTTCCGACGGGCCCCCATTCGAAGACATCATAGGTATTCTTGAAGAGGAAGTTGGTGAGAACTCAGATGTTGTGAATCAAGAAGAAGTCGATCCTCATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko03320 ko04360 ko04510 ko05100 ko05213 map03320 map04360 map04510 map05100 map05213
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 Pkinase_Tyr

Protein Analysis

252

Amino Acids

28.35

Weight (kDa)

4.91

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 31 - 100 3.5e-13 Ankyrin repeats (3 copies)
Ank_5 PF13857 38 - 85 2.9e-07 Ankyrin repeats (many copies)
Ank PF00023 47 - 79 8.2e-09 Ankyrin repeat
Ank_4 PF13637 53 - 100 5.8e-06 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27960
malus_domestica MD00G1053900.v1.1
prunus_persica Prupe.3G150700_v2.0.a1
pyrus_communis pycom17g25570
rosa_chinensis RchiOBHm_Chr5g0011771
rosa_laevigata RLG00000031861
rosa_roxburghii Rroxscaffold_1G00064780
rosa_rugosa Rorug04G0458900
rosa_samantha Rh5AG090600 Rh5BG086100 Rh5CG099900 Rh5DG086300
rosa_wichuraiana Rw5G007910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 164
AclWI GGATC 3 cut(s) 100, 644, 737
AcsI RAATTY 1 cut(s) 294
AfaI GTAC 1 cut(s) 640
AfiI CCNNNNNNNGG 1 cut(s) 659
AgsI TTSAA 5 cut(s) 302, 363, 419, 588, 695
AjuI GAANNNNNNNTTGG 2 cut(s) 687, 719
AleI CACNNNNGTG 1 cut(s) 498
AluBI AGCT 3 cut(s) 63, 196, 334
AluI AGCT 3 cut(s) 63, 196, 334
Alw21I GWGCWC 1 cut(s) 505
Alw26I GTCTC 2 cut(s) 276, 484
AlwI GGATC 3 cut(s) 100, 644, 737
AoxI GGCC 1 cut(s) 662
ApaI GGGCCC 1 cut(s) 666
ApeKI GCWGC 2 cut(s) 154, 595
ApoI RAATTY 1 cut(s) 294
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 2 cut(s) 662, 663
AsuHPI GGTGA 5 cut(s) 17, 89, 446, 659, 719
AsuII TTCGAA 1 cut(s) 672
BaeGI GKGCMC 1 cut(s) 666
BanII GRGCYC 1 cut(s) 666
BbsI GAAGAC 1 cut(s) 681
Bbv12I GWGCWC 1 cut(s) 505
BbvI GCAGC 2 cut(s) 141, 607
BccI CCATC 2 cut(s) 231, 601
BceAI ACGGC 1 cut(s) 165
BcgI CGANNNNNNTGC 3 cut(s) 270, 304, 731
BcoDI GTCTC 2 cut(s) 276, 484
BfmI CTRYAG 1 cut(s) 208
BfoI RGCGCY 1 cut(s) 155
BisI GCNGC 3 cut(s) 155, 165, 596
BlsI GCNGC 3 cut(s) 156, 166, 597
BmgT120I GGNCC 2 cut(s) 662, 663
BmiI GGNNCC 2 cut(s) 664, 665
BmsI GCATC 2 cut(s) 166, 250
BoxI GACNNNNGTC 1 cut(s) 482
BpiI GAAGAC 1 cut(s) 681
BpmI CTGGAG 1 cut(s) 489
Bpu10I CCTNAGC 1 cut(s) 528
Bpu14I TTCGAA 1 cut(s) 672
BpuEI CTTGAG 1 cut(s) 79
BsaAI YACGTR 1 cut(s) 500
BsaBI GATNNNNATC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 659
Bse1I ACTGG 2 cut(s) 327, 506
Bse3DI GCAATG 1 cut(s) 322
Bse8I GATNNNNATC 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 559
BseJI GATNNNNATC 1 cut(s) 104
BseLI CCNNNNNNNGG 1 cut(s) 659
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 432, 729
BseNI ACTGG 2 cut(s) 327, 506
BseRI GAGGAG 1 cut(s) 617
BseSI GKGCMC 1 cut(s) 666
BseXI GCAGC 2 cut(s) 141, 607
BsgI GTGCAG 1 cut(s) 614
BshFI GGCC 1 cut(s) 664
BsiHKAI GWGCWC 1 cut(s) 505
BslI CCNNNNNNNGG 1 cut(s) 659
BsmAI GTCTC 2 cut(s) 276, 484
BsnI GGCC 1 cut(s) 664
Bsp119I TTCGAA 1 cut(s) 672
Bsp120I GGGCCC 1 cut(s) 662
Bsp1286I GDGCHC 2 cut(s) 505, 666
Bsp1407I TGTACA 1 cut(s) 638
Bsp143I GATC 3 cut(s) 105, 649, 742
BspACI CCGC 1 cut(s) 164
BspANI GGCC 1 cut(s) 664
BspCNI CTCAG 2 cut(s) 433, 728
BspLI GGNNCC 2 cut(s) 664, 665
BspPI GGATC 3 cut(s) 100, 644, 737
BspT104I TTCGAA 1 cut(s) 672
BsrDI GCAATG 1 cut(s) 322
BsrGI TGTACA 1 cut(s) 638
BsrI ACTGG 2 cut(s) 327, 506
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 3 cut(s) 105, 649, 742
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 2 cut(s) 343, 481
Bst6I CTCTTC 1 cut(s) 690
BstAUI TGTACA 1 cut(s) 638
BstBAI YACGTR 1 cut(s) 500
BstBI TTCGAA 1 cut(s) 672
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 4 cut(s) 441, 528, 554, 715
BstF5I GGATG 1 cut(s) 559
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 3 cut(s) 108, 652, 745
BstMAI GTCTC 2 cut(s) 276, 484
BstMBI GATC 3 cut(s) 105, 649, 742
BstNSI RCATGY 2 cut(s) 24, 40
BstPAI GACNNNNGTC 1 cut(s) 482
BstSFI CTRYAG 1 cut(s) 208
BstSLI GKGCMC 1 cut(s) 666
BstV1I GCAGC 2 cut(s) 141, 607
BstV2I GAAGAC 1 cut(s) 681
BsuRI GGCC 1 cut(s) 664
BtsCI GGATG 1 cut(s) 559
Cac8I GCNNGC 1 cut(s) 22
CfoI GCGC 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 662, 663
Csp6I GTAC 1 cut(s) 639
CspCI CAANNNNNGTGG 2 cut(s) 439, 474
CviAII CATG 6 cut(s) 21, 37, 350, 356, 382, 749
CviJI RGCY 5 cut(s) 63, 196, 215, 334, 664
CviKI_1 RGCY 5 cut(s) 63, 196, 215, 334, 664
CviQI GTAC 1 cut(s) 639
DdeI CTNAG 4 cut(s) 441, 528, 554, 715
DpnI GATC 3 cut(s) 107, 651, 744
DpnII GATC 3 cut(s) 105, 649, 742
Eam1104I CTCTTC 1 cut(s) 690
EarI CTCTTC 1 cut(s) 690
Eco130I CCWWGG 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 666
EcoO109I RGGNCCY 1 cut(s) 663
EcoRI GAATTC 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 22
EcoT38I GRGCYC 1 cut(s) 666
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 6 cut(s) 24, 40, 353, 359, 385, 752
FatI CATG 6 cut(s) 20, 36, 349, 355, 381, 748
FauNDI CATATG 1 cut(s) 287
Fnu4HI GCNGC 3 cut(s) 155, 165, 596
FokI GGATG 1 cut(s) 546
FriOI GRGCYC 1 cut(s) 666
Fsp4HI GCNGC 3 cut(s) 155, 165, 596
GlaI GCGC 1 cut(s) 153
GluI GCNGC 3 cut(s) 155, 165, 596
GsuI CTGGAG 1 cut(s) 489
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 1 cut(s) 664
HhaI GCGC 1 cut(s) 154
Hin1II CATG 6 cut(s) 24, 40, 353, 359, 385, 752
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HinfI GANTC 7 cut(s) 10, 29, 267, 359, 437, 462, 727
HphI GGTGA 5 cut(s) 17, 89, 446, 659, 719
Hpy188I TCNGA 4 cut(s) 34, 442, 658, 718
Hpy188III TCNNGA 8 cut(s) 58, 72, 122, 281, 299, 487, 692, 731
Hpy99I CGWCG 2 cut(s) 29, 662
HpyAV CCTTC 2 cut(s) 439, 663
HpyCH4III ACNGT 2 cut(s) 343, 481
HpyCH4IV ACGT 1 cut(s) 499
HpyCH4V TGCA 8 cut(s) 20, 40, 130, 157, 263, 291, 574, 595
HpyF3I CTNAG 4 cut(s) 441, 528, 554, 715
HpySE526I ACGT 1 cut(s) 499
Hsp92II CATG 6 cut(s) 24, 40, 353, 359, 385, 752
HspAI GCGC 1 cut(s) 152
Kzo9I GATC 3 cut(s) 105, 649, 742
LmnI GCTCC 1 cut(s) 508
LpnPI CCDG 8 cut(s) 110, 130, 135, 146, 340, 407, 451, 519
Lsp1109I GCAGC 2 cut(s) 141, 607
LweI GCATC 2 cut(s) 166, 250
MaeII ACGT 1 cut(s) 499
MaeIII GTNAC 3 cut(s) 77, 176, 508
MalI GATC 3 cut(s) 107, 651, 744
MboI GATC 3 cut(s) 105, 649, 742
MboII GAAGA 3 cut(s) 686, 707, 746
MfeI CAATTG 1 cut(s) 588
MhlI GDGCHC 2 cut(s) 505, 666
MluCI AATT 4 cut(s) 294, 389, 575, 588
MlyI GAGTC 2 cut(s) 23, 261
MmeI TCCRAC 2 cut(s) 67, 681
MnlI CCTC 6 cut(s) 68, 166, 305, 595, 691, 756
Mph1103I ATGCAT 1 cut(s) 22
MseI TTAA 2 cut(s) 222, 372
MslI CAYNNNNRTG 2 cut(s) 354, 498
MunI CAATTG 1 cut(s) 588
NdeI CATATG 1 cut(s) 287
NdeII GATC 3 cut(s) 105, 649, 742
NlaIII CATG 6 cut(s) 24, 40, 353, 359, 385, 752
NlaIV GGNNCC 2 cut(s) 664, 665
NmuCI GTSAC 2 cut(s) 77, 176
NsiI ATGCAT 1 cut(s) 22
NspI RCATGY 2 cut(s) 24, 40
NspV TTCGAA 1 cut(s) 672
OliI CACNNNNGTG 1 cut(s) 498
PaeI GCATGC 1 cut(s) 24
PfeI GAWTC 5 cut(s) 10, 359, 437, 462, 727
PkrI GCNGC 3 cut(s) 156, 166, 597
PleI GAGTC 2 cut(s) 23, 261
PpsI GAGTC 2 cut(s) 23, 261
Ppu21I YACGTR 1 cut(s) 500
PshAI GACNNNNGTC 1 cut(s) 482
PspN4I GGNNCC 2 cut(s) 664, 665
PspOMI GGGCCC 1 cut(s) 662
PspPI GGNCC 2 cut(s) 662, 663
RsaI GTAC 1 cut(s) 640
RsaNI GTAC 1 cut(s) 639
RseI CAYNNNNRTG 2 cut(s) 354, 498
SaqAI TTAA 2 cut(s) 222, 372
SatI GCNGC 3 cut(s) 155, 165, 596
Sau3AI GATC 3 cut(s) 105, 649, 742
Sau96I GGNCC 2 cut(s) 662, 663
SchI GAGTC 2 cut(s) 23, 261
SduI GDGCHC 2 cut(s) 505, 666
SetI ASST 8 cut(s) 65, 79, 198, 336, 417, 450, 502, 688
SfaNI GCATC 2 cut(s) 166, 250
SfcI CTRYAG 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 672
SmiMI CAYNNNNRTG 2 cut(s) 354, 498
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
SphI GCATGC 1 cut(s) 24
Sse9I AATT 4 cut(s) 294, 389, 575, 588
SsiI CCGC 1 cut(s) 164
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 343, 481
TaiI ACGT 1 cut(s) 502
TaqI TCGA 5 cut(s) 71, 280, 346, 672, 741
TaqII GACCGA 1 cut(s) 249
TasI AATT 4 cut(s) 294, 389, 575, 588
TatI WGTACW 1 cut(s) 638
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 5 cut(s) 10, 359, 437, 462, 727
Tru1I TTAA 2 cut(s) 222, 372
Tru9I TTAA 2 cut(s) 222, 372
TseFI GTSAC 2 cut(s) 77, 176
TseI GCWGC 2 cut(s) 154, 595
Tsp45I GTSAC 2 cut(s) 77, 176
TspDTI ATGAA 2 cut(s) 366, 396
TspGWI ACGGA 1 cut(s) 401
XapI RAATTY 1 cut(s) 294
XceI RCATGY 2 cut(s) 24, 40
Zsp2I ATGCAT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.