Rh5AG090600

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0017270
Physical Location & Seq
Forward (+)
8180117 .. 8186260
6144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG090600.1

Sequence Viewer

Length: 1209 bp
ATGAAGACGATGGGTGAGATTCTCCATGCCCGCGACGACTTCGACATGCAACTGATAGGGAAATTCTTGAGCTTCGCTTCGAGAGGCGACCGAGTTGGACTGAACCAGATGTTGATCCAAGGCATATCTCCTGATGTGCAAGACTACGATAATAGGACGGCGCTGCATCTGGCGGCGAGTGAGGGTCACACTCCCATTGTTGAGCTTCTCGTGTGCTACAAGGCCAACGTTAATCTCCAAGACCGATGGAAAAGAACTCCCCTGACAGATGCAAGACTCTATGGACATCGAGATATATGCAGGATTCTTGAAGTGAATGGAGCCAATGACTTTACCAGTGATCAGTTGATGACCGTTCGACACGAACAAGATTCAAATGATGTGAAGTTTGACATGACGGAATTAGATACAGATAGTTCATCAGCGATTCAACAGGGTTCATTTGGTGAATCTGAAAAGGTCAAGTGGCGTGGAATCTGGGTCGTAAAGACCGTTGTCAAAAAAGACATATGTGCTCCTGTTAGGATACTCTCTGCTAAGGATAATACTCTCTTACGGGAGCTTAGACATCCCAATATATTGCAGTTTCTTGGTTCAATTGTGCAGCAAGAGGAGATGGTTCTAATTACCGAGTATCTACCAAAAGGCAATCTCGAGGATATTTTGACGCAAAGAACACGTCTTGATGTGCCTACGGCTCTACGCTATGCACTTGATATTGCTAGGGGAATGAACTATCTTCATAAGCACGTGCCATCCCCAATAGTTCACAGCCATTTGAGTACCAGAAACTTGTTTCAGGATGAAGGTGGGCACTTGAAGATTGGGGAGTATTGGGTTCAAATGTTGCATGAACAAATTAACCCAGATCAAAATGGAAGGCAAAACAGTGATGGGACACAGGATTTAACCAAGATAGATATTTGGAGGTTCGGATTCATATATTATCAGATGCTAGAAGGAATGCACTTCCAGGCCAACACAAACTCTGATCAACCCGAACTCGTTGATTTTAAACCGAAATTCCATTTAAGTCGATGTTCTAATAGAATTCAAGAGTTGATAGGGAAATGCACAGGTCATCCTTCTCGAAGACCCCCATTCGAAGAGGTCATACTTATCCTAGAAGAGGAACTATTGTCTGTGGGTAGAGGTGTATGTCCAGTTTACTGCCTACAGATGGAGATGGGCAACAAGTGCACCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko03320 ko04360 ko04510 ko05100 ko05213 map03320 map04360 map04510 map05100 map05213
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 Pkinase_Tyr

Protein Analysis

402

Amino Acids

46.09

Weight (kDa)

6.02

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 34 - 104 7.5e-13 Ankyrin repeats (3 copies)
Ank_5 PF13857 41 - 88 2.6e-06 Ankyrin repeats (many copies)
Ank PF00023 50 - 82 1.8e-08 Ankyrin repeat
Ank_4 PF13637 55 - 103 2.3e-06 Ankyrin repeats (many copies)
PK_Tyr_Ser-Thr PF07714 141 - 372 1.6e-24 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 143 - 370 2.2e-19 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27960
malus_domestica MD00G1053900.v1.1
prunus_persica Prupe.3G150700_v2.0.a1
pyrus_communis pycom17g25570
rosa_chinensis RchiOBHm_Chr5g0011771
rosa_laevigata RLG00000031861
rosa_roxburghii Rroxscaffold_1G00064780
rosa_rugosa Rorug04G0458900
rosa_samantha Rh5AG090600 Rh5BG086100 Rh5CG099900 Rh5DG086300
rosa_wichuraiana Rw5G007910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 33
AciI CCGC 2 cut(s) 31, 173
AclI AACGTT 1 cut(s) 228
AclWI GGATC 1 cut(s) 109
AcsI RAATTY 3 cut(s) 62, 1022, 1050
AcvI CACGTG 1 cut(s) 751
AfaI GTAC 1 cut(s) 784
AfiI CCNNNNNNNGG 2 cut(s) 1129, 1180
AflIII ACRYGT 1 cut(s) 677
AgsI TTSAA 7 cut(s) 311, 375, 431, 597, 820, 842, 1055
AjiI CACGTC 1 cut(s) 680
AjnI CCWGG 1 cut(s) 972
AluBI AGCT 3 cut(s) 72, 205, 562
AluI AGCT 3 cut(s) 72, 205, 562
Alw21I GWGCWC 2 cut(s) 517, 1202
Alw44I GTGCAC 1 cut(s) 1198
AlwI GGATC 1 cut(s) 109
Ama87I CYCGRG 1 cut(s) 653
AoxI GGCC 2 cut(s) 222, 975
ApaLI GTGCAC 1 cut(s) 1198
ApeKI GCWGC 2 cut(s) 163, 604
ApoI RAATTY 3 cut(s) 62, 1022, 1050
ArsI GACNNNNNNTTYG 2 cut(s) 664, 696
AspLEI GCGC 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 26, 458
AsuII TTCGAA 1 cut(s) 1104
AvaI CYCGRG 1 cut(s) 653
BaeGI GKGCMC 2 cut(s) 816, 1202
BarI GAAGNNNNNNTAC 2 cut(s) 1098, 1130
BauI CACGAG 1 cut(s) 209
BbrPI CACGTG 1 cut(s) 751
BbsI GAAGAC 2 cut(s) 11, 1099
Bbv12I GWGCWC 2 cut(s) 517, 1202
BbvI GCAGC 2 cut(s) 150, 616
BccI CCATC 7 cut(s) 4, 240, 610, 763, 887, 1174, 1180
BceAI ACGGC 2 cut(s) 174, 711
BcgI CGANNNNNNTGC 2 cut(s) 279, 313
BciT130I CCWGG 1 cut(s) 974
BciVI GTATCC 1 cut(s) 519
BclI TGATCA 2 cut(s) 340, 991
BfaI CTAG 3 cut(s) 723, 956, 1124
BfmI CTRYAG 1 cut(s) 1175
BfoI RGCGCY 1 cut(s) 164
BfuI GTATCC 1 cut(s) 519
BisI GCNGC 3 cut(s) 164, 174, 605
BlsI GCNGC 3 cut(s) 165, 175, 606
Bme1390I CCNGG 1 cut(s) 974
BmeT110I CYCGRG 1 cut(s) 653
BmgBI CACGTC 1 cut(s) 680
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 1 cut(s) 974
BmsI GCATC 3 cut(s) 175, 259, 942
BoxI GACNNNNGTC 1 cut(s) 494
BpiI GAAGAC 2 cut(s) 11, 1099
Bpu10I CCTNAGC 1 cut(s) 537
Bpu14I TTCGAA 1 cut(s) 1104
BpuEI CTTGAG 1 cut(s) 88
BsaAI YACGTR 1 cut(s) 751
BsaBI GATNNNNATC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 2 cut(s) 1129, 1180
Bse1I ACTGG 2 cut(s) 336, 1163
Bse8I GATNNNNATC 1 cut(s) 113
BseBI CCWGG 1 cut(s) 974
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 4 cut(s) 568, 755, 808, 1081
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 2 cut(s) 1129, 1180
BseNI ACTGG 2 cut(s) 336, 1163
BseRI GAGGAG 1 cut(s) 626
BseSI GKGCMC 2 cut(s) 816, 1202
BseXI GCAGC 2 cut(s) 150, 616
BsgI GTGCAG 1 cut(s) 623
Bsh1236I CGCG 1 cut(s) 33
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 2 cut(s) 224, 977
BsiEI CGRYCG 1 cut(s) 91
BsiHKAI GWGCWC 2 cut(s) 517, 1202
BsiHKCI CYCGRG 1 cut(s) 653
BslFI GGGAC 1 cut(s) 910
BslI CCNNNNNNNGG 2 cut(s) 1129, 1180
BsmFI GGGAC 1 cut(s) 910
BsmI GAATGC 1 cut(s) 969
BsnI GGCC 2 cut(s) 224, 977
BsoBI CYCGRG 1 cut(s) 653
Bsp119I TTCGAA 1 cut(s) 1104
Bsp1286I GDGCHC 3 cut(s) 517, 816, 1202
Bsp143I GATC 4 cut(s) 114, 340, 868, 991
BspACI CCGC 2 cut(s) 31, 173
BspANI GGCC 2 cut(s) 224, 977
BspFNI CGCG 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 322
BspPI GGATC 1 cut(s) 109
BspT104I TTCGAA 1 cut(s) 1104
BsrI ACTGG 2 cut(s) 336, 1163
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 4 cut(s) 114, 340, 868, 991
BssSI CACGAG 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 118
Bst2BI CACGAG 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 974
Bst4CI ACNGT 3 cut(s) 355, 493, 890
Bst6I CTCTTC 2 cut(s) 1101, 1122
BstAPI GCANNNNNTGC 1 cut(s) 1197
BstBAI YACGTR 1 cut(s) 751
BstBI TTCGAA 1 cut(s) 1104
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 2 cut(s) 537, 563
BstENI CCTNNNNNAGG 1 cut(s) 1127
BstF5I GGATG 4 cut(s) 568, 755, 808, 1081
BstFNI CGCG 1 cut(s) 33
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 4 cut(s) 117, 343, 871, 994
BstMBI GATC 4 cut(s) 114, 340, 868, 991
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 1197
BstNI CCWGG 1 cut(s) 974
BstNSI RCATGY 1 cut(s) 49
BstPAI GACNNNNGTC 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 972
BstSFI CTRYAG 1 cut(s) 1175
BstSLI GKGCMC 2 cut(s) 816, 1202
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 2 cut(s) 150, 616
BstV2I GAAGAC 2 cut(s) 11, 1099
BsuI GTATCC 1 cut(s) 519
BsuRI GGCC 2 cut(s) 224, 977
BtrI CACGTC 1 cut(s) 680
BtsCI GGATG 4 cut(s) 568, 755, 808, 1081
BtsIMutI CAGTG 2 cut(s) 343, 895
Cac8I GCNNGC 1 cut(s) 31
CfoI GCGC 1 cut(s) 163
CseI GACGC 1 cut(s) 676
Csp6I GTAC 1 cut(s) 783
CspCI CAANNNNNGTGG 2 cut(s) 451, 486
CviAII CATG 4 cut(s) 26, 46, 394, 851
CviJI RGCY 8 cut(s) 72, 205, 224, 323, 562, 698, 774, 977
CviKI_1 RGCY 8 cut(s) 72, 205, 224, 323, 562, 698, 774, 977
CviQI GTAC 1 cut(s) 783
DdeI CTNAG 2 cut(s) 537, 563
DpnI GATC 4 cut(s) 116, 342, 870, 993
DpnII GATC 4 cut(s) 114, 340, 868, 991
DraI TTTAAA 1 cut(s) 1015
Eam1104I CTCTTC 2 cut(s) 1101, 1122
EarI CTCTTC 2 cut(s) 1101, 1122
Eco130I CCWWGG 1 cut(s) 118
Eco72I CACGTG 1 cut(s) 751
Eco88I CYCGRG 1 cut(s) 653
EcoNI CCTNNNNNAGG 1 cut(s) 1127
EcoRI GAATTC 1 cut(s) 1050
EcoRII CCWGG 1 cut(s) 972
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 4 cut(s) 29, 49, 397, 854
FaqI GGGAC 1 cut(s) 910
FatI CATG 4 cut(s) 25, 45, 393, 850
FauI CCCGC 1 cut(s) 38
FauNDI CATATG 1 cut(s) 509
FbaI TGATCA 2 cut(s) 340, 991
Fnu4HI GCNGC 3 cut(s) 164, 174, 605
FokI GGATG 4 cut(s) 555, 742, 815, 1068
Fsp4HI GCNGC 3 cut(s) 164, 174, 605
FspBI CTAG 3 cut(s) 723, 956, 1124
GlaI GCGC 1 cut(s) 162
GluI GCNGC 3 cut(s) 164, 174, 605
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 2 cut(s) 224, 977
HgaI GACGC 1 cut(s) 676
HhaI GCGC 1 cut(s) 163
Hin1II CATG 4 cut(s) 29, 49, 397, 854
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HinfI GANTC 8 cut(s) 19, 276, 304, 371, 427, 449, 474, 936
HphI GGTGA 2 cut(s) 26, 458
Hpy166II GTNNAC 3 cut(s) 769, 1168, 1200
Hpy188I TCNGA 4 cut(s) 454, 935, 951, 991
Hpy8I GTNNAC 3 cut(s) 769, 1168, 1200
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 4 cut(s) 800, 873, 953, 1095
HpyCH4III ACNGT 3 cut(s) 355, 493, 890
HpyCH4IV ACGT 3 cut(s) 228, 679, 750
HpyF10VI GCNNNNNNNGC 1 cut(s) 1197
HpyF3I CTNAG 2 cut(s) 537, 563
HpySE526I ACGT 3 cut(s) 228, 679, 750
Hsp92II CATG 4 cut(s) 29, 49, 397, 854
HspAI GCGC 1 cut(s) 161
Ksp22I TGATCA 2 cut(s) 340, 991
Kzo9I GATC 4 cut(s) 114, 340, 868, 991
LmnI GCTCC 3 cut(s) 320, 520, 559
Lsp1109I GCAGC 2 cut(s) 150, 616
LweI GCATC 3 cut(s) 175, 259, 942
MaeI CTAG 3 cut(s) 723, 956, 1124
MaeII ACGT 3 cut(s) 228, 679, 750
MaeIII GTNAC 1 cut(s) 185
MalI GATC 4 cut(s) 116, 342, 870, 993
MboI GATC 4 cut(s) 114, 340, 868, 991
MboII GAAGA 6 cut(s) 16, 731, 832, 1104, 1118, 1139
MfeI CAATTG 1 cut(s) 597
MhlI GDGCHC 3 cut(s) 517, 816, 1202
MluCI AATT 7 cut(s) 62, 401, 597, 624, 858, 1022, 1050
MlyI GAGTC 1 cut(s) 270
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 8 cut(s) 77, 175, 604, 649, 921, 1102, 1123, 1145
MseI TTAA 5 cut(s) 231, 861, 908, 1014, 1031
MspR9I CCNGG 1 cut(s) 974
MunI CAATTG 1 cut(s) 597
Mva1269I GAATGC 1 cut(s) 969
MvaI CCWGG 1 cut(s) 974
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 1197
NdeI CATATG 1 cut(s) 509
NdeII GATC 4 cut(s) 114, 340, 868, 991
NlaIII CATG 4 cut(s) 29, 49, 397, 854
NlaIV GGNNCC 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 185
NspI RCATGY 1 cut(s) 49
NspV TTCGAA 1 cut(s) 1104
PaeR7I CTCGAG 1 cut(s) 653
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PctI GAATGC 1 cut(s) 969
PfeI GAWTC 7 cut(s) 19, 304, 371, 427, 449, 474, 936
PkrI GCNGC 3 cut(s) 165, 175, 606
PleI GAGTC 1 cut(s) 270
PmaCI CACGTG 1 cut(s) 751
PmlI CACGTG 1 cut(s) 751
PpsI GAGTC 1 cut(s) 270
Ppu21I YACGTR 1 cut(s) 751
PshAI GACNNNNGTC 1 cut(s) 494
Psp1406I AACGTT 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 972
PspCI CACGTG 1 cut(s) 751
PspGI CCWGG 1 cut(s) 972
PspN4I GGNNCC 1 cut(s) 322
RsaI GTAC 1 cut(s) 784
RsaNI GTAC 1 cut(s) 783
SaqAI TTAA 5 cut(s) 231, 861, 908, 1014, 1031
SatI GCNGC 3 cut(s) 164, 174, 605
Sau3AI GATC 4 cut(s) 114, 340, 868, 991
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 1 cut(s) 974
SduI GDGCHC 3 cut(s) 517, 816, 1202
SfaNI GCATC 3 cut(s) 175, 259, 942
SfcI CTRYAG 1 cut(s) 1175
Sfr274I CTCGAG 1 cut(s) 653
SfuI TTCGAA 1 cut(s) 1104
SlaI CTCGAG 1 cut(s) 653
SmlI CTYRAG 2 cut(s) 67, 653
SmoI CTYRAG 2 cut(s) 67, 653
Sse9I AATT 7 cut(s) 62, 401, 597, 624, 858, 1022, 1050
SsiI CCGC 2 cut(s) 31, 173
SspMI CTAG 3 cut(s) 723, 956, 1124
StyD4I CCNGG 1 cut(s) 972
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 3 cut(s) 355, 493, 890
TaiI ACGT 3 cut(s) 231, 682, 753
TaqI TCGA 8 cut(s) 42, 80, 289, 358, 654, 1036, 1090, 1104
TaqII GACCGA 2 cut(s) 105, 258
TasI AATT 7 cut(s) 62, 401, 597, 624, 858, 1022, 1050
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 7 cut(s) 19, 304, 371, 427, 449, 474, 936
Tru1I TTAA 5 cut(s) 231, 861, 908, 1014, 1031
Tru9I TTAA 5 cut(s) 231, 861, 908, 1014, 1031
TscAI CASTG 2 cut(s) 343, 895
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 2 cut(s) 163, 604
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 8 cut(s) 17, 408, 429, 731, 746, 819, 867, 928
TspGWI ACGGA 1 cut(s) 413
TspRI CASTG 2 cut(s) 343, 895
VneI GTGCAC 1 cut(s) 1198
XagI CCTNNNNNAGG 1 cut(s) 1127
XapI RAATTY 3 cut(s) 62, 1022, 1050
XceI RCATGY 1 cut(s) 49
XhoI CTCGAG 1 cut(s) 653
XspI CTAG 3 cut(s) 723, 956, 1124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.