FvH4_3g29210

ABC transporter G family member

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
22346925 .. 22355021
8097 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29210.t1

Sequence Viewer

Length: 1602 bp
ATGCCTACGCAGTTTGAGGAGGTGGTTTACAAGATCAAAATCAAGAATGTGGGAATGATAGGAGGAATGTTATGGCCAAAGACTGAGGAGACTGAGAAAGTGATCCTGAAGGGTGTGACAGGAATGGCAGAACCAGGTGAAATTCTAGCCATGTTAGGTCCATCCGGAAGTGGCAAAACGACTCTCCTAACCGCACTAGGAGGCCGTCTCAGTGGCCAACTCGCCGGAACCATAACCTACAATGGCAAAACCATCTCCAATGCAATGAAAAGAAACACCGGATTCGTTTCCCAAGACGATTTTCTCTATCCCCATCTAACCGTCACCGAAACCCTAGTTTTCACAGCCCTTCTCCGATTGCCAAACACTCTAACAAAGGAAGAGAAGGCATCCCAAGCCGAATCGGTTATAGCTCAACTCGGATTGAGCCAGTGCCGAAACAGCATTATAGGCCATGAGTTCCTGAGGGGTGTTTCAGGAGGGGAGAGGAGAAGGGTGAGCATAGGGCAAGAGTTGCTTCTGTTACTTTTATCTGAAGGAAATGCTCTGTATTTTGGCAAAGTCTCTGCAGTCATGGACTACTTTTCGGACATAGGGTTTTCCCCATCTGTACCCATGAACCCTGCTGATTTCCTCTTGGACCTTGCTAATGGGTTGACAAGTGATGGGGAGGATGCAAATGAGTCCATAGATGATCATATGCAAAGCATTGTTGTGGCCTATAGAGAGAGGCTTTCGGAGAAACTGAAGGCGGAACTTGCAGAGGACAAACTATCAGATGGTGCAGAAGATAATACTAAGCAGGAGTTTGGGAGGTGGCCAACAACATGGTGGCAGCAATTCAGTGTATTATTGAGGAGAGGGGTGAGGGAGAGGAAGCACGGTCTCTCTGCTTACCGCCCTACTGTGGTGGAAATCGCATATTTCACACTTACAGGATCAGATTGGGATTTTCTTCTTTATGTGCGGATTTTGGGGCTTCTTTCCTCTCTTAGATGCAATCGCAACATTCCCCCCGGAGCACAAGATGCTCGAAAAGGAGCGGTCTTCTGGCACTTACAGACTTTCCTCCTATTTCATGTCAAGGAAATCGTCTCTGACCTACCCATGGAACTTGTTCTTCCTACCCTATTCCTCACAATAAAGTACTGGTGCACAGGCCTAAAACCCACCGTCGGACACTTCTTGCATGCCTTGCTGGTTCTGTTACTCGGTGTTTCAGTTGCTCAAGGCTTAGGACTTGCTCTTGGTGCTCTGGTGATGGACCATGAGTTGGCCATGACACTTGGAACAGTCTTCATGTTGTCATTCCAACTAGTCGGTGGCTTCTTTGTTCAACAAGTGCCTAGGTTTATAGCTTGGCTGAAGTACCTTTCGTTCGTGCACTACTCGTACAAACTCCTCTTGGGGTCTCAATACAAGGCAGATGAGACATATCCATGTGACAATGGAGGAGTTTGCGTGATTGCAGATTATCCATCTATAAAAATGGTGGGACTTGATGGACAACTGATCTCTGTGATTGCTTTGGTTATCATGCTTGTGGGTTACAGGTTAATTGCTTATGTCGCCCTCATGAGGATTGGGGTTACAAGAAAGTAA

Protein Analysis

534

Amino Acids

58.91

Weight (kDa)

6.81

Isoelectric Point (pI)

29.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 36 - 172 6.2e-23 ABC transporter
ABC2_membrane PF01061 362 - 473 3.9e-21 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1273
AccBSI CCGCTC 1 cut(s) 1043
AccIII TCCGGA 1 cut(s) 164
AciI CCGC 5 cut(s) 192, 752, 898, 967, 1043
AclWI GGATC 2 cut(s) 97, 946
AcoI YGGCCR 4 cut(s) 74, 214, 818, 1275
AcsI RAATTY 1 cut(s) 141
AcuI CTGAAG 4 cut(s) 128, 555, 767, 1385
AfaI GTAC 4 cut(s) 612, 1148, 1370, 1394
AfiI CCNNNNNNNGG 5 cut(s) 907, 1108, 1175, 1273, 1578
AgsI TTSAA 1 cut(s) 1337
AhlI ACTAGT 1 cut(s) 1315
AjnI CCWGG 1 cut(s) 133
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 2 cut(s) 413, 1358
AluI AGCT 2 cut(s) 413, 1358
Alw21I GWGCWC 4 cut(s) 1024, 1157, 1255, 1386
Alw26I GTCTC 7 cut(s) 83, 212, 568, 890, 1099, 1416, 1424
Alw44I GTGCAC 2 cut(s) 1153, 1382
AlwI GGATC 2 cut(s) 97, 946
Aor13HI TCCGGA 1 cut(s) 164
AoxI GGCC 8 cut(s) 74, 202, 214, 451, 717, 818, 1159, 1275
ApaLI GTGCAC 2 cut(s) 1153, 1382
ApeKI GCWGC 1 cut(s) 835
ApoI RAATTY 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 1116
AspA2I CCTAGG 1 cut(s) 1346
AspS9I GGNCC 3 cut(s) 158, 640, 1264
AsuC2I CCSGG 1 cut(s) 1017
AsuHPI GGTGA 5 cut(s) 149, 316, 508, 877, 1270
AvaII GGWCC 3 cut(s) 158, 640, 1264
AvrII CCTAGG 1 cut(s) 1346
AxyI CCTNAGG 1 cut(s) 464
BaeGI GKGCMC 2 cut(s) 1157, 1386
BalI TGGCCA 4 cut(s) 76, 216, 820, 1277
BbsI GAAGAC 2 cut(s) 1039, 1288
Bbv12I GWGCWC 4 cut(s) 1024, 1157, 1255, 1386
BbvI GCAGC 1 cut(s) 847
BccI CCATC 9 cut(s) 169, 260, 321, 613, 659, 773, 1255, 1486, 1496
BceAI ACGGC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 135
BclI TGATCA 1 cut(s) 694
BcnI CCSGG 1 cut(s) 1017
BcoDI GTCTC 7 cut(s) 83, 212, 568, 890, 1099, 1416, 1424
BcuI ACTAGT 1 cut(s) 1315
BfaI CTAG 5 cut(s) 146, 197, 335, 1316, 1347
BfmI CTRYAG 2 cut(s) 567, 721
BisI GCNGC 1 cut(s) 836
BlnI CCTAGG 1 cut(s) 1346
BlsI GCNGC 1 cut(s) 837
BmcAI AGTACT 1 cut(s) 1148
Bme1390I CCNGG 2 cut(s) 135, 1017
Bme18I GGWCC 3 cut(s) 158, 640, 1264
BmgT120I GGNCC 3 cut(s) 158, 640, 1264
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 2 cut(s) 135, 1017
BmsI GCATC 4 cut(s) 398, 664, 986, 1018
BpiI GAAGAC 2 cut(s) 1039, 1288
BplI GAGNNNNNCTC 2 cut(s) 192, 224
Bpu10I CCTNAGC 1 cut(s) 1234
BpuEI CTTGAG 1 cut(s) 1212
BpuMI CCSGG 1 cut(s) 1017
BsaBI GATNNNNATC 1 cut(s) 38
BsaI GGTCTC 2 cut(s) 890, 1416
BsaJI CCNNGG 3 cut(s) 1015, 1107, 1346
BsaWI WCCGGW 2 cut(s) 164, 278
BsaXI ACNNNNNCTCC 2 cut(s) 1446, 1476
Bsc4I CCNNNNNNNGG 5 cut(s) 907, 1108, 1175, 1273, 1578
Bse1I ACTGG 2 cut(s) 430, 1154
Bse21I CCTNAGG 1 cut(s) 464
Bse3DI GCAATG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 38
BseAI TCCGGA 1 cut(s) 164
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 3 cut(s) 1015, 1107, 1346
BseGI GGATG 3 cut(s) 161, 389, 679
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 5 cut(s) 907, 1108, 1175, 1273, 1578
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 4 cut(s) 75, 84, 223, 455
BseNI ACTGG 2 cut(s) 430, 1154
BseRI GAGGAG 6 cut(s) 32, 101, 502, 871, 1391, 1467
BseSI GKGCMC 2 cut(s) 1157, 1386
BseXI GCAGC 1 cut(s) 847
BsgI GTGCAG 1 cut(s) 804
BshFI GGCC 8 cut(s) 76, 204, 216, 453, 719, 820, 1161, 1277
BsiHKAI GWGCWC 4 cut(s) 1024, 1157, 1255, 1386
BsiSI CCGG 4 cut(s) 165, 225, 279, 1017
BslFI GGGAC 1 cut(s) 1509
BslI CCNNNNNNNGG 5 cut(s) 907, 1108, 1175, 1273, 1578
BsmAI GTCTC 7 cut(s) 83, 212, 568, 890, 1099, 1416, 1424
BsmBI CGTCTC 2 cut(s) 212, 1099
BsmFI GGGAC 1 cut(s) 1509
BsnI GGCC 8 cut(s) 76, 204, 216, 453, 719, 820, 1161, 1277
Bso31I GGTCTC 2 cut(s) 890, 1416
Bsp1286I GDGCHC 4 cut(s) 1024, 1157, 1255, 1386
Bsp13I TCCGGA 1 cut(s) 164
Bsp143I GATC 5 cut(s) 33, 102, 694, 938, 1512
Bsp19I CCATGG 1 cut(s) 1107
BspACI CCGC 5 cut(s) 192, 752, 898, 967, 1043
BspANI GGCC 8 cut(s) 76, 204, 216, 453, 719, 820, 1161, 1277
BspCNI CTCAG 4 cut(s) 76, 85, 222, 456
BspEI TCCGGA 1 cut(s) 164
BspHI TCATGA 1 cut(s) 1575
BspLI GGNNCC 1 cut(s) 229
BspMAI CTGCAG 1 cut(s) 571
BspPI GGATC 2 cut(s) 97, 946
BspTNI GGTCTC 2 cut(s) 890, 1416
BsrBI CCGCTC 1 cut(s) 1043
BsrDI GCAATG 1 cut(s) 270
BsrI ACTGG 2 cut(s) 430, 1154
BssECI CCNNGG 3 cut(s) 1015, 1107, 1346
BssMI GATC 5 cut(s) 33, 102, 694, 938, 1512
BssT1I CCWWGG 2 cut(s) 1107, 1346
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 5 cut(s) 322, 884, 907, 1174, 1294
Bst6I CTCTTC 1 cut(s) 375
BstAPI GCANNNNNTGC 3 cut(s) 514, 1028, 1195
BstC8I GCNNGC 1 cut(s) 1191
BstDEI CTNAG 7 cut(s) 84, 93, 209, 464, 798, 992, 1234
BstDSI CCRYGG 1 cut(s) 1107
BstF5I GGATG 3 cut(s) 161, 389, 679
BstKTI GATC 5 cut(s) 36, 105, 697, 941, 1515
BstMAI GTCTC 7 cut(s) 83, 212, 568, 890, 1099, 1416, 1424
BstMBI GATC 5 cut(s) 33, 102, 694, 938, 1512
BstMWI GCNNNNNNNGC 9 cut(s) 395, 441, 450, 514, 758, 1028, 1195, 1250, 1568
BstNI CCWGG 1 cut(s) 135
BstNSI RCATGY 1 cut(s) 1193
BstSCI CCNGG 2 cut(s) 133, 1015
BstSFI CTRYAG 2 cut(s) 567, 721
BstSLI GKGCMC 2 cut(s) 1157, 1386
BstV1I GCAGC 1 cut(s) 847
BstV2I GAAGAC 2 cut(s) 1039, 1288
BstXI CCANNNNNNTGG 1 cut(s) 828
Bsu36I CCTNAGG 1 cut(s) 464
BsuRI GGCC 8 cut(s) 76, 204, 216, 453, 719, 820, 1161, 1277
BtgI CCRYGG 1 cut(s) 1107
BtsCI GGATG 3 cut(s) 161, 389, 679
BtsIMutI CAGTG 3 cut(s) 217, 437, 850
Cac8I GCNNGC 1 cut(s) 1191
CciI TCATGA 1 cut(s) 1575
Cfr13I GGNCC 3 cut(s) 158, 640, 1264
CsiI ACCWGGT 1 cut(s) 133
Csp6I GTAC 4 cut(s) 611, 1147, 1369, 1393
CviQI GTAC 4 cut(s) 611, 1147, 1369, 1393
DdeI CTNAG 7 cut(s) 84, 93, 209, 464, 798, 992, 1234
DpnI GATC 5 cut(s) 35, 104, 696, 940, 1514
DpnII GATC 5 cut(s) 33, 102, 694, 938, 1512
EaeI YGGCCR 4 cut(s) 74, 214, 818, 1275
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
EciI GGCGGA 1 cut(s) 767
Eco130I CCWWGG 2 cut(s) 1107, 1346
Eco147I AGGCCT 1 cut(s) 1161
Eco31I GGTCTC 2 cut(s) 890, 1416
Eco47I GGWCC 3 cut(s) 158, 640, 1264
Eco57I CTGAAG 4 cut(s) 128, 555, 767, 1385
Eco81I CCTNAGG 1 cut(s) 464
EcoRII CCWGG 1 cut(s) 133
EcoT14I CCWWGG 2 cut(s) 1107, 1346
ErhI CCWWGG 2 cut(s) 1107, 1346
Esp3I CGTCTC 2 cut(s) 212, 1099
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FaqI GGGAC 1 cut(s) 1509
FauNDI CATATG 1 cut(s) 699
FbaI TGATCA 1 cut(s) 694
Fnu4HI GCNGC 1 cut(s) 836
FokI GGATG 3 cut(s) 148, 376, 686
Fsp4HI GCNGC 1 cut(s) 836
FspBI CTAG 5 cut(s) 146, 197, 335, 1316, 1347
GluI GCNGC 1 cut(s) 836
HaeIII GGCC 8 cut(s) 76, 204, 216, 453, 719, 820, 1161, 1277
HapII CCGG 4 cut(s) 165, 225, 279, 1017
HincII GTYRAC 1 cut(s) 657
HindII GTYRAC 1 cut(s) 657
HinfI GANTC 4 cut(s) 181, 282, 401, 683
HpaII CCGG 4 cut(s) 165, 225, 279, 1017
HphI GGTGA 5 cut(s) 149, 316, 508, 877, 1270
Hpy166II GTNNAC 4 cut(s) 28, 657, 1155, 1384
Hpy188I TCNGA 9 cut(s) 356, 422, 535, 589, 739, 778, 943, 1099, 1178
Hpy188III TCNNGA 6 cut(s) 43, 106, 165, 463, 477, 1576
Hpy8I GTNNAC 4 cut(s) 28, 657, 1155, 1384
Hpy99I CGWCG 1 cut(s) 1178
HpyAV CCTTC 6 cut(s) 103, 359, 379, 486, 530, 742
HpyCH4III ACNGT 5 cut(s) 322, 884, 907, 1174, 1294
HpyF10VI GCNNNNNNNGC 9 cut(s) 395, 441, 450, 514, 758, 1028, 1195, 1250, 1568
HpyF3I CTNAG 7 cut(s) 84, 93, 209, 464, 798, 992, 1234
Kpn2I TCCGGA 1 cut(s) 164
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 5 cut(s) 33, 102, 694, 938, 1512
LmnI GCTCC 2 cut(s) 1019, 1040
Lsp1109I GCAGC 1 cut(s) 847
LweI GCATC 4 cut(s) 398, 664, 986, 1018
MabI ACCWGGT 1 cut(s) 133
MaeI CTAG 5 cut(s) 146, 197, 335, 1316, 1347
MaeIII GTNAC 7 cut(s) 115, 322, 522, 1206, 1442, 1547, 1588
MalI GATC 5 cut(s) 35, 104, 696, 940, 1514
MbiI CCGCTC 1 cut(s) 1043
MboI GATC 5 cut(s) 33, 102, 694, 938, 1512
MboII GAAGA 6 cut(s) 392, 800, 947, 1039, 1112, 1288
MhlI GDGCHC 4 cut(s) 1024, 1157, 1255, 1386
MlsI TGGCCA 4 cut(s) 76, 216, 820, 1277
MluCI AATT 3 cut(s) 141, 839, 1557
MluNI TGGCCA 4 cut(s) 76, 216, 820, 1277
MlyI GAGTC 2 cut(s) 175, 692
MmeI TCCRAC 2 cut(s) 1156, 1336
Mox20I TGGCCA 4 cut(s) 76, 216, 820, 1277
MroI TCCGGA 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 1116
MscI TGGCCA 4 cut(s) 76, 216, 820, 1277
MseI TTAA 1 cut(s) 1556
MslI CAYNNNNRTG 3 cut(s) 713, 1438, 1541
Msp20I TGGCCA 4 cut(s) 76, 216, 820, 1277
MspI CCGG 4 cut(s) 165, 225, 279, 1017
MspR9I CCNGG 2 cut(s) 135, 1017
MvaI CCWGG 1 cut(s) 135
MwoI GCNNNNNNNGC 9 cut(s) 395, 441, 450, 514, 758, 1028, 1195, 1250, 1568
NciI CCSGG 1 cut(s) 1017
NcoI CCATGG 1 cut(s) 1107
NdeI CATATG 1 cut(s) 699
NdeII GATC 5 cut(s) 33, 102, 694, 938, 1512
NlaIV GGNNCC 1 cut(s) 229
NmuCI GTSAC 3 cut(s) 115, 322, 1442
NspI RCATGY 1 cut(s) 1193
PaeI GCATGC 1 cut(s) 1193
PagI TCATGA 1 cut(s) 1575
PceI AGGCCT 1 cut(s) 1161
PdmI GAANNNNTTC 1 cut(s) 1116
PfeI GAWTC 2 cut(s) 282, 401
PflMI CCANNNNNTGG 1 cut(s) 1273
PkrI GCNGC 1 cut(s) 837
PleI GAGTC 2 cut(s) 175, 691
PpsI GAGTC 2 cut(s) 175, 691
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 229
PspPI GGNCC 3 cut(s) 158, 640, 1264
PsrI GAACNNNNNNTAC 2 cut(s) 1361, 1393
PstI CTGCAG 1 cut(s) 571
RsaI GTAC 4 cut(s) 612, 1148, 1370, 1394
RsaNI GTAC 4 cut(s) 611, 1147, 1369, 1393
RseI CAYNNNNRTG 3 cut(s) 713, 1438, 1541
SaqAI TTAA 1 cut(s) 1556
SatI GCNGC 1 cut(s) 836
Sau3AI GATC 5 cut(s) 33, 102, 694, 938, 1512
Sau96I GGNCC 3 cut(s) 158, 640, 1264
ScaI AGTACT 1 cut(s) 1148
SchI GAGTC 2 cut(s) 175, 692
ScrFI CCNGG 2 cut(s) 135, 1017
SduI GDGCHC 4 cut(s) 1024, 1157, 1255, 1386
SexAI ACCWGGT 1 cut(s) 133
SfaNI GCATC 4 cut(s) 398, 664, 986, 1018
SfcI CTRYAG 2 cut(s) 567, 721
SinI GGWCC 3 cut(s) 158, 640, 1264
SmiMI CAYNNNNRTG 3 cut(s) 713, 1438, 1541
SmlI CTYRAG 1 cut(s) 1227
SmoI CTYRAG 1 cut(s) 1227
SpeI ACTAGT 1 cut(s) 1315
SphI GCATGC 1 cut(s) 1193
Sse9I AATT 3 cut(s) 141, 839, 1557
SseBI AGGCCT 1 cut(s) 1161
SsiI CCGC 5 cut(s) 192, 752, 898, 967, 1043
SspMI CTAG 5 cut(s) 146, 197, 335, 1316, 1347
StuI AGGCCT 1 cut(s) 1161
StyD4I CCNGG 2 cut(s) 133, 1015
StyI CCWWGG 2 cut(s) 1107, 1346
TaaI ACNGT 5 cut(s) 322, 884, 907, 1174, 1294
TaqI TCGA 1 cut(s) 1033
TasI AATT 3 cut(s) 141, 839, 1557
TatI WGTACW 1 cut(s) 1146
TfiI GAWTC 2 cut(s) 282, 401
Tru1I TTAA 1 cut(s) 1556
Tru9I TTAA 1 cut(s) 1556
TscAI CASTG 3 cut(s) 217, 437, 850
TseFI GTSAC 3 cut(s) 115, 322, 1442
TseI GCWGC 1 cut(s) 835
Tsp45I GTSAC 3 cut(s) 115, 322, 1442
TspDTI ATGAA 4 cut(s) 281, 632, 1067, 1288
TspRI CASTG 3 cut(s) 217, 437, 850
Van91I CCANNNNNTGG 1 cut(s) 1273
VneI GTGCAC 2 cut(s) 1153, 1382
VpaK11BI GGWCC 3 cut(s) 158, 640, 1264
XapI RAATTY 1 cut(s) 141
XceI RCATGY 1 cut(s) 1193
XcmI CCANNNNNNNNNTGG 2 cut(s) 828, 1319
XmaJI CCTAGG 1 cut(s) 1346
XmnI GAANNNNTTC 1 cut(s) 1116
XspI CTAG 5 cut(s) 146, 197, 335, 1316, 1347
ZrmI AGTACT 1 cut(s) 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.