Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004013

Physical Location & Seq

Genomic Coordinates Reverse (-)

56630612 .. 56638294

Gene Structure 7683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034891

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3462 bp

ATGGCAATGGCTGAGAATGGTGGAGTGGTCTGCAAATGCACTGCCAGGAGAAGCTTCCGCTTCAGACAACCCAGGCACTCCAATCTCCGAAACCTTTCCAGAATTCCTCTCTTCTCTCGCCGCCCATCTCTTGCCGGAAAACTTACCCTCCTCAGCACAAGTGCACAAGAGAAATCAAGGCCTGCGATATTGTCATCTACGAGACATAAGACAATTCCCATATATGTGATGATGCCTGTTGATGCATTCTGCATAGATGGTTCTGGGATTCCAAGGATTAGGAGACTCAAGGCCTTAACTGCATCTCTAAAAGCACTCAAGTTGGCAGCTGTCCGTGGAATTGCAGTTGAGGTTTGGTGGGGAATCGTAGAACGCTTCTCTCCCCTTGCATATGACTGGTCTCTATATGAAAAGCTATTTAAGCTGATTTCTGAGTCAGGGTTAAAGGTGCATGTTGCCTTGTCTTTTCACTCAAATGTAAACTCTTCTTCTTGCACAAATGGGGGTGTAAGTCTTCCGCTTTGGATCACACAGATTGGTGACAGCAATAAGCATATATACTATCGAGACAAAAATGGGTTTTCAAGTGATGATTATCTTTCGCTAGGGGTTGATAACCTTCCTCTGTTTTGTGGCCGGACTGCCCTTCAATGTTATGAAGATTTTATGACCAGTTTTGTTAAGAAATTTGAATCCCATATTGGAAGTGTCATAGAAGAAATTTGTGTTGGTCTTGGTCCTTCTGGTGAACTTAGGTATCCTGCACATTTTGGTGATGGTATATGGAAGTTCCCTGGAATTGGCGAGTTCCAGTGCTATGACAAGTACATGCTGGACAACCTAAAGATGGCCGCATGTGAGGAAGGGAAGCCTCAATGGGGAGAAGGGGGACCACCAAATGCTGGCTATTACAATAGTCTTCCATCTGGAGCTCCTTTCTTTGAAGAGGGAGAGGAAAGCTTTCTTTCTGATTATGGGTGCTTTTTCCTTGAATGGTATAGTGGTAGTTTGCTTGGTCATGCAGATGCTATTCTTGCAAAGGCAGCCAAAATTTTGAAGAAGTATCAAGAAGACGAGCAAACTTCTATTCTGTTAGTGGCTAAAATTGGTGGAATATATTGGTGGTACCAGACGGTAGCACACCCTGCTGAACTCACAGCTGGATACTACAACACTGCTCTTAGGGATGGTTATGATCCTGTTGCTTCAATTTTTTCTCGTCATGGAGCTGCTTTGCATGTGTCCTGCTTGGAAATGATGGATGGTGAGACACCAGAATCCTATCTCTGCAGCCCAGAAGGATTACTGCAACAGTTATGGAGTGTTTCAAAGAAAAGGATAATACATTTGATCGGGAGAAACACCAACGAACGATTTGACAGGGTTAGTTTGTGGCAAATACATGCCAACTGTTACCATTCACAGGCGGAAGTTGTAAGATCATTTACTTATTTCAGGATGGATGATAAGATCTTTAGGGCTGAAAACTGGAGTAACTTCGTTCCTTTTGTTAGAAAAATGAGCACAATCCTCAACTCCAGTACTGTTACTGCTAATGAGCAACAGATGATGGAATTAGAGATCCAGACTGACAAAAGCTCCCCAGATGAAACCCCCTCCATGTTTAAGAAATCGATTCGGCCAGTCACATTGAAGTTTGAGGACGTAATCTACAAGATCAGAATCAAGAATGTGGGAATAGGAGGAATATTATGGCCACAGAGGAGCAAGGAGACTGAGAAAGTGATATTGAAGGGTGTGACAGGAATGGCAGAACCAGGTGAAATTCTAGCATTGTTAGGTCCATCCGGAAGTGGCAAAACGACTCTCCTAACCGCACTAGGAGGCCGTCTCGGTGGCCAACTCACCGGAAGCATAACCTACAACGGCAAACCCATATCGAACGCAATGAAAAGAAACACCGGATTCGTTTCCCAATACGATTTTCTCTATCCCCATGTAACCGTGGTCGAAACCCTAGTTTTCACTGCCCTTCTCCGCTTGCCAAACACTCTAACCAAGGAAGAGAAGGTATCCCAAGCTGAATCGGTTATAGCCCAACTCGGATTAACCCAGTGCCGAAACAGCATTATAGGTCATGAGTTCCTGAGGGGTGTTTCAGGAGGCGAGCGGAGAAGGGTGAGCATAGGGAAAGAGTTGCTTGTAAACCCTAGCTTGCTCATATTGGACGAACCCACCTCCGGCCTCGATTCCACCACAGCTCAATGCATCGTTTCGGCATTGTCTGAGTTAGCCAGTGGTGGGAGAACAATAGTGATGACAATACACCAGCCTTCCAGTCGGCTGTTTTACATGTTTCACAAGCTGTTGCTGTTATCGGATGGAAATGCTTTGTATTTTGGCAAGGTCTCTGCAGTCATGGACTACTTTTCGGACATAGGGTTTGCCTCATCTGTACCCATGAATCCTGCTGATTTTCTCTTGGACCTTGCTAATGGGTTGAAAAGTGATGGTGCGCATGCAAATGAGTCCATTGATGATCACATGCAGAGCATCGTTGTGGCCTATAAGGAGAAGCTTTCGGAGAAATTGAAGGAGGAACTTGCAGGCAAACGATTCAATGAAGATAAATTATCAAATGGTCCAGAAGACAATAGTAAGGAGGAGTTTGGGAGGTGGCCGACAACATGGTGGCAGCAATTCAGTGTGTTGTTGAGGAGAGTAGTGAGGGAGAGGAAGCATGAGTCCTTCTCTCCTCTCAAGATTTTTGAGGTGCTTGCAGTCTCTCTTCTTACTGCCCTACTATGGTGGAAATCGCATATTTCCCACTTACAAGATCAGATTGGGATTTTCTTCTTTATTTGCGGATTCTGGGGCTTTTTTCCTCTCTTAGAAGCAATCTCTACATTTCCCCAAGAGCACAAGATGCTCCAAAAGGAACGGTCTTCTGGCACTTACAGACTTTCCTCCTATTTCATGTCAAGGATTGTCGCTGACCTACCCATGGAACTTGTTCTTCCTACCCTATTCCTCGCAATAACATACTGGTCGGCAGGCCTAAAATCCACTATTGGACACTTCTTGCATGCCTTGTTGGTTCTGTTACTCAGTGTTTCAGTTTCTCGAGGCTTAGGACTTGCCCTTGGTGCTTTGGTAATGGACCATGAGGTGGCCATGACACTTGGATCGGTCTTCATGTTGTCATTTCTTCTAGTTGGTGGATACTATGTTCAACAGGTGCCTAGATTTATATCTTGGATCAAGTACCTTTCGTTCTCTCACTACTCGTACAAACTCTTCTTGGGGTCTCAATACAAGACAGATGAGACATATCCATGTGACGATGCTGGAGGAGTTTGCGTGATTGCAGATTATCCAGCTATAAAAATGGTGGGGCTTGATGGACAATTTAGCTCTGTGATTGCTTTGGTTTTCATGCTTGTAGGTTACAGGCTAATTGCTTATGTCGCCCTCATGAGGATTGGGGTTACAGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

1154

Amino Acids

128.73

Weight (kDa)

8.39

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	76 - 503	2.2e-104	Glycosyl hydrolase family 14
ABC_tran	PF00005	584 - 734	2.7e-28	ABC transporter
ABC2_membrane_7	PF19055	763 - 834	1.2e-09	ABC-2 type transporter
ABC2_membrane_7	PF19055	859 - 1146	1.6e-06	ABC-2 type transporter
ABC2_membrane	PF01061	886 - 1092	7e-42	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27420
fragaria_vesca	FvH4_3g20680 FvH4_3g29210
malus_domestica	MD03G1138200.v1.1 MD03G1177900.v1.1 MD03G1180300.v1.1 MD03G1181200.v1.1 MD03G1182200.v1.1 MD03G1222900.v1.1 MD11G1240300.v1.1
prunus_persica	Prupe.4G186700_v2.0.a1 Prupe.8G022900_v2.0.a1
pyrus_communis	pycom03g13470 pycom11g21230
rosa_chinensis	RchiOBHm_Chr5g0034741 RchiOBHm_Chr5g0053511 RchiOBHm_Chr5g0053631
rosa_laevigata	RLG00000033574 RLG00000034891
rosa_multiflora	Rmu_sc0002460.1_g000057 Rmu_sc0003228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045590
rosa_rugosa	Rorug05G0147900
rosa_samantha	Rh5AG240600 Rh5AG351700 Rh5AG352400 Rh5BG240700 Rh5BG364000 Rh5CG271700 Rh5DG249000 Rh5DG378600
rosa_wichuraiana	Rw5G021980 Rw5G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2478
Acc65I	GGTACC	1 cut(s)	1125
AccB1I	GGYRCC	2 cut(s)	1125, 3199
AccB7I	CCANNNNNTGG	2 cut(s)	902, 3130
AccBSI	CCGCTC	1 cut(s)	2131
AccIII	TCCGGA	1 cut(s)	1808
AciI	CCGC	9 cut(s)	58, 121, 518, 852, 1427, 1836, 1999, 2131, 2826
AclWI	GGATC	5 cut(s)	533, 1190, 1576, 3154, 3227
AcoI	YGGCCR	7 cut(s)	634, 849, 1640, 1715, 1858, 2639, 3132
AcsI	RAATTY	5 cut(s)	102, 686, 720, 1050, 1785
AcuI	CTGAAG	1 cut(s)	46
AfaI	GTAC	6 cut(s)	827, 1127, 1543, 2418, 3227, 3251
AflIII	ACRYGT	1 cut(s)	2313
AjnI	CCWGG	4 cut(s)	44, 71, 793, 1777
AjuI	GAANNNNNNNTTGG	6 cut(s)	684, 711, 716, 743, 1929, 1961
AloI	GAACNNNNNNTCC	2 cut(s)	3174, 3206
Alw21I	GWGCWC	4 cut(s)	166, 934, 1526, 2883
Alw44I	GTGCAC	1 cut(s)	162
AlwI	GGATC	5 cut(s)	533, 1190, 1576, 3154, 3227
Ama87I	CYCGRG	1 cut(s)	3084
Aor13HI	TCCGGA	1 cut(s)	1808
ApaLI	GTGCAC	1 cut(s)	162
ApeKI	GCWGC	5 cut(s)	326, 1043, 1229, 1290, 2656
ApoI	RAATTY	5 cut(s)	102, 686, 720, 1050, 1785
ArsI	GACNNNNNNTTYG	2 cut(s)	2387, 2419
Asp700I	GAANNNNTTC	3 cut(s)	94, 960, 2973
Asp718I	GGTACC	1 cut(s)	1125
AspLEI	GCGC	1 cut(s)	2479
AspS9I	GGNCC	6 cut(s)	737, 890, 1802, 2446, 2603, 3121
AsuHPI	GGTGA	7 cut(s)	551, 758, 785, 1277, 1793, 1858, 2152
AvaI	CYCGRG	1 cut(s)	3084
AvaII	GGWCC	6 cut(s)	737, 890, 1802, 2446, 2603, 3121
AxyI	CCTNAGG	1 cut(s)	2108
BaeGI	GKGCMC	1 cut(s)	166
BaeI	ACNNNNGTAYC	2 cut(s)	740, 773
BalI	TGGCCA	3 cut(s)	1717, 1860, 3134
BanI	GGYRCC	2 cut(s)	1125, 3199
BanII	GRGCYC	1 cut(s)	934
BarI	GAAGNNNNNNTAC	2 cut(s)	3242, 3274
BbsI	GAAGAC	6 cut(s)	506, 911, 1077, 2616, 2898, 3145
Bbv12I	GWGCWC	4 cut(s)	166, 934, 1526, 2883
BbvCI	CCTCAGC	1 cut(s)	152
BbvI	GCAGC	5 cut(s)	338, 1055, 1216, 1302, 2668
BceAI	ACGGC	2 cut(s)	1833, 1903
BciT130I	CCWGG	4 cut(s)	46, 73, 795, 1779
BciVI	GTATCC	4 cut(s)	768, 1157, 2044, 3176
BclI	TGATCA	1 cut(s)	2500
BfaI	CTAG	7 cut(s)	605, 1790, 1841, 1979, 2172, 3173, 3204
BfmI	CTRYAG	2 cut(s)	1288, 2373
BfuI	GTATCC	4 cut(s)	768, 1157, 2044, 3176
BglII	AGATCT	1 cut(s)	1470
BisI	GCNGC	7 cut(s)	121, 327, 852, 1044, 1230, 1291, 2657
BlsI	GCNGC	7 cut(s)	122, 328, 853, 1045, 1231, 1292, 2658
BmcAI	AGTACT	1 cut(s)	1543
Bme1390I	CCNGG	4 cut(s)	46, 73, 795, 1779
Bme18I	GGWCC	6 cut(s)	737, 890, 1802, 2446, 2603, 3121
BmeT110I	CYCGRG	1 cut(s)	3084
BmgT120I	GGNCC	6 cut(s)	737, 890, 1802, 2446, 2603, 3121
BmiI	GGNNCC	3 cut(s)	891, 1127, 3201
BmrFI	CCNGG	4 cut(s)	46, 73, 795, 1779
BmrI	ACTGGG	1 cut(s)	2068
BmsI	GCATC	8 cut(s)	222, 232, 311, 1015, 2238, 2523, 2877, 3295
BmuI	ACTGGG	1 cut(s)	2068
BpiI	GAAGAC	6 cut(s)	506, 911, 1077, 2616, 2898, 3145
BplI	GAGNNNNNCTC	4 cut(s)	1836, 1868, 2696, 2728
BpmI	CTGGAG	4 cut(s)	948, 1510, 1522, 3330
Bpu10I	CCTNAGC	2 cut(s)	152, 3091
BpuEI	CTTGAG	3 cut(s)	272, 302, 2705
Bsa29I	ATCGAT	1 cut(s)	1634
BsaBI	GATNNNNATC	3 cut(s)	594, 1682, 3211
BsaI	GGTCTC	3 cut(s)	405, 2374, 3273
BsaJI	CCNNGG	8 cut(s)	71, 272, 334, 793, 1965, 2019, 2964, 3103
BsaWI	WCCGGW	3 cut(s)	1808, 1868, 1922
BsaXI	ACNNNNNCTCC	6 cut(s)	132, 162, 1583, 1613, 3306, 3336
Bse21I	CCTNAGG	1 cut(s)	2108
Bse3DI	GCAATG	2 cut(s)	12, 1914
Bse8I	GATNNNNATC	3 cut(s)	594, 1682, 3211
BseAI	TCCGGA	1 cut(s)	1808
BseBI	CCWGG	4 cut(s)	46, 73, 795, 1779
BseCI	ATCGAT	1 cut(s)	1634
BseDI	CCNNGG	8 cut(s)	71, 272, 334, 793, 1965, 2019, 2964, 3103
BseGI	GGATG	6 cut(s)	1192, 1267, 1464, 1468, 1805, 2347
BseJI	GATNNNNATC	3 cut(s)	594, 1682, 3211
BseMI	GCAATG	2 cut(s)	12, 1914
BseMII	CTCAG	6 cut(s)	166, 423, 1728, 2099, 2238, 3082
BseRI	GAGGAG	6 cut(s)	140, 1738, 2639, 2692, 2706, 3327
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	5 cut(s)	338, 1055, 1216, 1302, 2668
BsgI	GTGCAG	1 cut(s)	747
BshNI	GGYRCC	2 cut(s)	1125, 3199
BshVI	ATCGAT	1 cut(s)	1634
BsiHKAI	GWGCWC	4 cut(s)	166, 934, 1526, 2883
BsiHKCI	CYCGRG	1 cut(s)	3084
BsiSI	CCGG	6 cut(s)	135, 637, 1809, 1869, 1923, 2202
BslFI	GGGAC	1 cut(s)	903
BsmBI	CGTCTC	1 cut(s)	1856
BsmFI	GGGAC	1 cut(s)	903
BsmI	GAATGC	1 cut(s)	245
Bso31I	GGTCTC	3 cut(s)	405, 2374, 3273
BsoBI	CYCGRG	1 cut(s)	3084
Bsp1286I	GDGCHC	4 cut(s)	166, 934, 1526, 2883
Bsp13I	TCCGGA	1 cut(s)	1808
Bsp19I	CCATGG	1 cut(s)	2964
BspACI	CCGC	9 cut(s)	58, 121, 518, 852, 1427, 1836, 1999, 2131, 2826
BspCNI	CTCAG	7 cut(s)	4, 165, 424, 1729, 2100, 2239, 3081
BspDI	ATCGAT	1 cut(s)	1634
BspEI	TCCGGA	1 cut(s)	1808
BspHI	TCATGA	2 cut(s)	2098, 3435
BspLI	GGNNCC	3 cut(s)	891, 1127, 3201
BspMAI	CTGCAG	2 cut(s)	1292, 2377
BspPI	GGATC	5 cut(s)	533, 1190, 1576, 3154, 3227
BspT107I	GGYRCC	2 cut(s)	1125, 3199
BspTNI	GGTCTC	3 cut(s)	405, 2374, 3273
BsrBI	CCGCTC	1 cut(s)	2131
BsrDI	GCAATG	2 cut(s)	12, 1914
BssECI	CCNNGG	8 cut(s)	71, 272, 334, 793, 1965, 2019, 2964, 3103
BssT1I	CCWWGG	4 cut(s)	272, 2019, 2964, 3103
Bst2UI	CCWGG	4 cut(s)	46, 73, 795, 1779
Bst4CI	ACNGT	6 cut(s)	1135, 1314, 1412, 1546, 1966, 2904
Bst6I	CTCTTC	6 cut(s)	116, 490, 939, 2019, 2754, 3263
BstAPI	GCANNNNNTGC	2 cut(s)	1145, 2887
BstDSI	CCRYGG	3 cut(s)	334, 1965, 2964
BstF5I	GGATG	6 cut(s)	1192, 1267, 1464, 1468, 1805, 2347
BstHHI	GCGC	1 cut(s)	2479
BstMWI	GCNNNNNNNGC	9 cut(s)	299, 421, 1034, 1043, 1145, 2085, 2887, 3107, 3428
BstNI	CCWGG	4 cut(s)	46, 73, 795, 1779
BstNSI	RCATGY	9 cut(s)	455, 832, 858, 1241, 1406, 2317, 2483, 2509, 3050
BstSCI	CCNGG	4 cut(s)	44, 71, 793, 1777
BstSFI	CTRYAG	2 cut(s)	1288, 2373
BstSLI	GKGCMC	1 cut(s)	166
BstV1I	GCAGC	5 cut(s)	338, 1055, 1216, 1302, 2668
BstV2I	GAAGAC	6 cut(s)	506, 911, 1077, 2616, 2898, 3145
BstX2I	RGATCY	2 cut(s)	1470, 1581
BstYI	RGATCY	2 cut(s)	1470, 1581
Bsu15I	ATCGAT	1 cut(s)	1634
Bsu36I	CCTNAGG	1 cut(s)	2108
BsuI	GTATCC	4 cut(s)	768, 1157, 2044, 3176
BsuTUI	ATCGAT	1 cut(s)	1634
BtgI	CCRYGG	3 cut(s)	334, 1965, 2964
BtsCI	GGATG	6 cut(s)	1192, 1267, 1464, 1468, 1805, 2347
BtsI	GCAGTG	3 cut(s)	39, 1173, 1986
BtsIMutI	CAGTG	8 cut(s)	39, 818, 1173, 1986, 2081, 2263, 2671, 3076
CciI	TCATGA	2 cut(s)	2098, 3435
CfoI	GCGC	1 cut(s)	2479
Cfr13I	GGNCC	6 cut(s)	737, 890, 1802, 2446, 2603, 3121
ClaI	ATCGAT	1 cut(s)	1634
CsiI	ACCWGGT	1 cut(s)	1777
Csp6I	GTAC	6 cut(s)	826, 1126, 1542, 2417, 3226, 3250
CviQI	GTAC	6 cut(s)	826, 1126, 1542, 2417, 3226, 3250
EaeI	YGGCCR	7 cut(s)	634, 849, 1640, 1715, 1858, 2639, 3132
Eam1104I	CTCTTC	6 cut(s)	116, 490, 939, 2019, 2754, 3263
EarI	CTCTTC	6 cut(s)	116, 490, 939, 2019, 2754, 3263
EciI	GGCGGA	1 cut(s)	1442
Ecl136II	GAGCTC	1 cut(s)	932
Eco130I	CCWWGG	4 cut(s)	272, 2019, 2964, 3103
Eco147I	AGGCCT	3 cut(s)	181, 293, 3018
Eco24I	GRGCYC	1 cut(s)	934
Eco31I	GGTCTC	3 cut(s)	405, 2374, 3273
Eco47I	GGWCC	6 cut(s)	737, 890, 1802, 2446, 2603, 3121
Eco53kI	GAGCTC	1 cut(s)	932
Eco57I	CTGAAG	1 cut(s)	46
Eco81I	CCTNAGG	1 cut(s)	2108
Eco88I	CYCGRG	1 cut(s)	3084
EcoICRI	GAGCTC	1 cut(s)	932
EcoRI	GAATTC	1 cut(s)	102
EcoRII	CCWGG	4 cut(s)	44, 71, 793, 1777
EcoT14I	CCWWGG	4 cut(s)	272, 2019, 2964, 3103
EcoT22I	ATGCAT	2 cut(s)	247, 2231
EcoT38I	GRGCYC	1 cut(s)	934
ErhI	CCWWGG	4 cut(s)	272, 2019, 2964, 3103
Esp3I	CGTCTC	1 cut(s)	1856
FalI	AAGNNNNNCTT	2 cut(s)	2145, 2177
FaqI	GGGAC	1 cut(s)	903
FauNDI	CATATG	1 cut(s)	391
FbaI	TGATCA	1 cut(s)	2500
Fnu4HI	GCNGC	7 cut(s)	121, 327, 852, 1044, 1230, 1291, 2657
FokI	GGATG	6 cut(s)	1199, 1274, 1471, 1475, 1792, 2354
FriOI	GRGCYC	1 cut(s)	934
Fsp4HI	GCNGC	7 cut(s)	121, 327, 852, 1044, 1230, 1291, 2657
FspAI	RTGCGCAY	1 cut(s)	2478
FspBI	CTAG	7 cut(s)	605, 1790, 1841, 1979, 2172, 3173, 3204
FspI	TGCGCA	1 cut(s)	2478
GlaI	GCGC	1 cut(s)	2478
GluI	GCNGC	7 cut(s)	121, 327, 852, 1044, 1230, 1291, 2657
GsuI	CTGGAG	4 cut(s)	948, 1510, 1522, 3330
HapII	CCGG	6 cut(s)	135, 637, 1809, 1869, 1923, 2202
HhaI	GCGC	1 cut(s)	2479
Hin6I	GCGC	1 cut(s)	2477
HinP1I	GCGC	1 cut(s)	2477
HindIII	AAGCTT	3 cut(s)	52, 958, 2537
HpaII	CCGG	6 cut(s)	135, 637, 1809, 1869, 1923, 2202
HphI	GGTGA	7 cut(s)	551, 758, 785, 1277, 1793, 1858, 2152
Hpy166II	GTNNAC	4 cut(s)	164, 481, 749, 2167
Hpy8I	GTNNAC	4 cut(s)	164, 481, 749, 2167
HpyCH4III	ACNGT	6 cut(s)	1135, 1314, 1412, 1546, 1966, 2904
HpyCH4IV	ACGT	1 cut(s)	1665
HpyF10VI	GCNNNNNNNGC	9 cut(s)	299, 421, 1034, 1043, 1145, 2085, 2887, 3107, 3428
HpySE526I	ACGT	1 cut(s)	1665
HspAI	GCGC	1 cut(s)	2477
Kpn2I	TCCGGA	1 cut(s)	1808
KpnI	GGTACC	1 cut(s)	1129
Ksp22I	TGATCA	1 cut(s)	2500
LmnI	GCTCC	6 cut(s)	929, 937, 1226, 1604, 1725, 2895
Lsp1109I	GCAGC	5 cut(s)	338, 1055, 1216, 1302, 2668
LweI	GCATC	8 cut(s)	222, 232, 311, 1015, 2238, 2523, 2877, 3295
MabI	ACCWGGT	1 cut(s)	1777
MaeI	CTAG	7 cut(s)	605, 1790, 1841, 1979, 2172, 3173, 3204
MaeII	ACGT	1 cut(s)	1665
MbiI	CCGCTC	1 cut(s)	2131
MflI	RGATCY	2 cut(s)	1470, 1581
MhlI	GDGCHC	4 cut(s)	166, 934, 1526, 2883
MlsI	TGGCCA	3 cut(s)	1717, 1860, 3134
MluNI	TGGCCA	3 cut(s)	1717, 1860, 3134
MlyI	GAGTC	5 cut(s)	279, 443, 1819, 2498, 2714
Mox20I	TGGCCA	3 cut(s)	1717, 1860, 3134
Mph1103I	ATGCAT	2 cut(s)	247, 2231
MroI	TCCGGA	1 cut(s)	1808
MroXI	GAANNNNTTC	3 cut(s)	94, 960, 2973
MscI	TGGCCA	3 cut(s)	1717, 1860, 3134
MseI	TTAA	6 cut(s)	296, 420, 443, 681, 1626, 2069
MslI	CAYNNNNRTG	7 cut(s)	224, 474, 771, 1023, 2484, 2519, 3295
Msp20I	TGGCCA	3 cut(s)	1717, 1860, 3134
MspA1I	CMGCKG	2 cut(s)	329, 1160
MspI	CCGG	6 cut(s)	135, 637, 1809, 1869, 1923, 2202
MspR9I	CCNGG	4 cut(s)	46, 73, 795, 1779
Mva1269I	GAATGC	1 cut(s)	245
MvaI	CCWGG	4 cut(s)	46, 73, 795, 1779
MwoI	GCNNNNNNNGC	9 cut(s)	299, 421, 1034, 1043, 1145, 2085, 2887, 3107, 3428
NcoI	CCATGG	1 cut(s)	2964
NdeI	CATATG	1 cut(s)	391
NlaIV	GGNNCC	3 cut(s)	891, 1127, 3201
NmuCI	GTSAC	4 cut(s)	539, 1645, 1759, 3299
NsbI	TGCGCA	1 cut(s)	2478
NsiI	ATGCAT	2 cut(s)	247, 2231
NspI	RCATGY	9 cut(s)	455, 832, 858, 1241, 1406, 2317, 2483, 2509, 3050
PaeI	GCATGC	2 cut(s)	2483, 3050
PaeR7I	CTCGAG	1 cut(s)	3084
PagI	TCATGA	2 cut(s)	2098, 3435
PceI	AGGCCT	3 cut(s)	181, 293, 3018
PciI	ACATGT	1 cut(s)	2313
PctI	GAATGC	1 cut(s)	245
PdmI	GAANNNNTTC	3 cut(s)	94, 960, 2973
PflMI	CCANNNNNTGG	2 cut(s)	902, 3130
PkrI	GCNGC	7 cut(s)	122, 328, 853, 1045, 1231, 1292, 2658
PleI	GAGTC	5 cut(s)	279, 442, 1819, 2497, 2713
PpsI	GAGTC	5 cut(s)	279, 442, 1819, 2497, 2713
PscI	ACATGT	1 cut(s)	2313
Psp124BI	GAGCTC	1 cut(s)	934
Psp6I	CCWGG	4 cut(s)	44, 71, 793, 1777
PspGI	CCWGG	4 cut(s)	44, 71, 793, 1777
PspN4I	GGNNCC	3 cut(s)	891, 1127, 3201
PspPI	GGNCC	6 cut(s)	737, 890, 1802, 2446, 2603, 3121
PsrI	GAACNNNNNNTAC	2 cut(s)	3218, 3250
PstI	CTGCAG	2 cut(s)	1292, 2377
PsuI	RGATCY	2 cut(s)	1470, 1581
PvuII	CAGCTG	2 cut(s)	329, 1160
RsaI	GTAC	6 cut(s)	827, 1127, 1543, 2418, 3227, 3251
RsaNI	GTAC	6 cut(s)	826, 1126, 1542, 2417, 3226, 3250
RseI	CAYNNNNRTG	7 cut(s)	224, 474, 771, 1023, 2484, 2519, 3295
SacI	GAGCTC	1 cut(s)	934
SaqAI	TTAA	6 cut(s)	296, 420, 443, 681, 1626, 2069
SatI	GCNGC	7 cut(s)	121, 327, 852, 1044, 1230, 1291, 2657
Sau96I	GGNCC	6 cut(s)	737, 890, 1802, 2446, 2603, 3121
ScaI	AGTACT	1 cut(s)	1543
SchI	GAGTC	5 cut(s)	279, 443, 1819, 2498, 2714
ScrFI	CCNGG	4 cut(s)	46, 73, 795, 1779
SduI	GDGCHC	4 cut(s)	166, 934, 1526, 2883
SexAI	ACCWGGT	1 cut(s)	1777
SfaNI	GCATC	8 cut(s)	222, 232, 311, 1015, 2238, 2523, 2877, 3295
SfcI	CTRYAG	2 cut(s)	1288, 2373
Sfr274I	CTCGAG	1 cut(s)	3084
SinI	GGWCC	6 cut(s)	737, 890, 1802, 2446, 2603, 3121
SlaI	CTCGAG	1 cut(s)	3084
SmiMI	CAYNNNNRTG	7 cut(s)	224, 474, 771, 1023, 2484, 2519, 3295
SmlI	CTYRAG	4 cut(s)	287, 317, 2720, 3084
SmoI	CTYRAG	4 cut(s)	287, 317, 2720, 3084
SphI	GCATGC	2 cut(s)	2483, 3050
SseBI	AGGCCT	3 cut(s)	181, 293, 3018
SsiI	CCGC	9 cut(s)	58, 121, 518, 852, 1427, 1836, 1999, 2131, 2826
SspI	AATATT	1 cut(s)	1710
SspMI	CTAG	7 cut(s)	605, 1790, 1841, 1979, 2172, 3173, 3204
SstI	GAGCTC	1 cut(s)	934
StuI	AGGCCT	3 cut(s)	181, 293, 3018
StyD4I	CCNGG	4 cut(s)	44, 71, 793, 1777
StyI	CCWWGG	4 cut(s)	272, 2019, 2964, 3103
TaaI	ACNGT	6 cut(s)	1135, 1314, 1412, 1546, 1966, 2904
TaiI	ACGT	1 cut(s)	1668
TaqI	TCGA	6 cut(s)	565, 1634, 1901, 1971, 2208, 3085
TaqII	GACCGA	1 cut(s)	3139
TatI	WGTACW	2 cut(s)	825, 1541
TauI	GCSGC	2 cut(s)	123, 854
Tru1I	TTAA	6 cut(s)	296, 420, 443, 681, 1626, 2069
Tru9I	TTAA	6 cut(s)	296, 420, 443, 681, 1626, 2069
TscAI	CASTG	8 cut(s)	46, 818, 1180, 1993, 2081, 2263, 2671, 3076
TseFI	GTSAC	4 cut(s)	539, 1645, 1759, 3299
TseI	GCWGC	5 cut(s)	326, 1043, 1229, 1290, 2656
Tsp45I	GTSAC	4 cut(s)	539, 1645, 1759, 3299
TspDTI	ATGAA	9 cut(s)	423, 672, 1623, 1925, 2438, 2598, 2926, 3145, 3385
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	8 cut(s)	46, 818, 1180, 1993, 2081, 2263, 2671, 3076
Van91I	CCANNNNNTGG	2 cut(s)	902, 3130
VneI	GTGCAC	1 cut(s)	162
VpaK11BI	GGWCC	6 cut(s)	737, 890, 1802, 2446, 2603, 3121
XapI	RAATTY	5 cut(s)	102, 686, 720, 1050, 1785
XceI	RCATGY	9 cut(s)	455, 832, 858, 1241, 1406, 2317, 2483, 2509, 3050
XhoI	CTCGAG	1 cut(s)	3084
XmnI	GAANNNNTTC	3 cut(s)	94, 960, 2973
XspI	CTAG	7 cut(s)	605, 1790, 1841, 1979, 2172, 3173, 3204
ZrmI	AGTACT	1 cut(s)	1543
Zsp2I	ATGCAT	2 cut(s)	247, 2231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.