Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004013

Physical Location & Seq

Genomic Coordinates Reverse (-)

24844645 .. 24846292

Gene Structure 1648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1181200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCAGTCGTCTGCAAATGCACAACAGCGAGGAGGAGCTTCTTCTGCTTCAGAGAAGTCAGTTTCGACGACAAGCCCGACCACCGAAACCTCCTCCGAAACGTTTCGACTCTTCCCGTCTTTAAAAAAGGCCTCTTCACTCGCTGCAGCCCATCCCTTGCCGGAAACAGTATTCTCAGTATGGATGCACGAGAGAATTCGAGGTCCTCGATATTGTCATCATCCCTAGATAAGAGAATTCCCATATATGTGATGATGCCTATTGATGCCTTCTGCATTGATGGTACGGGGCGTCCAAGGATTAGGAAAATCAAGGCCTTAACTGTAGCTCTAAAAAGCACTCAAGTTGGCAGGTGTCCACGGAATTGCAGTTTGAAGTTGCATGTTGCCTTGTCTTTTCACTCAAATGTTAACTCTTCTTCTAGCAGAAAAGGGGGTGTAACTCTTCCGCCTTGGATCATAGAGATTGGTGATCAGAATAAGCATATATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

165

Amino Acids

18.3

Weight (kDa)

10.11

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27420
fragaria_vesca	FvH4_3g20680 FvH4_3g29210
malus_domestica	MD03G1138200.v1.1 MD03G1177900.v1.1 MD03G1180300.v1.1 MD03G1181200.v1.1 MD03G1182200.v1.1 MD03G1222900.v1.1 MD11G1240300.v1.1
prunus_persica	Prupe.4G186700_v2.0.a1 Prupe.8G022900_v2.0.a1
pyrus_communis	pycom03g13470 pycom11g21230
rosa_chinensis	RchiOBHm_Chr5g0034741 RchiOBHm_Chr5g0053511 RchiOBHm_Chr5g0053631
rosa_laevigata	RLG00000033574 RLG00000034891
rosa_multiflora	Rmu_sc0002460.1_g000057 Rmu_sc0003228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045590
rosa_rugosa	Rorug05G0147900
rosa_samantha	Rh5AG240600 Rh5AG351700 Rh5AG352400 Rh5BG240700 Rh5BG364000 Rh5CG271700 Rh5DG249000 Rh5DG378600
rosa_wichuraiana	Rw5G021980 Rw5G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	342
Acc36I	ACCTGC	1 cut(s)	342
AciI	CCGC	1 cut(s)	449
AclI	AACGTT	1 cut(s)	102
AclWI	GGATC	1 cut(s)	464
AcsI	RAATTY	2 cut(s)	196, 237
AcuI	CTGAAG	1 cut(s)	34
AcyI	GRCGYC	1 cut(s)	292
AfaI	GTAC	1 cut(s)	286
AgsI	TTSAA	1 cut(s)	376
AluBI	AGCT	2 cut(s)	39, 329
AluI	AGCT	2 cut(s)	39, 329
AlwI	GGATC	1 cut(s)	464
AoxI	GGCC	2 cut(s)	130, 315
ApeKI	GCWGC	2 cut(s)	144, 147
ApoI	RAATTY	2 cut(s)	196, 237
Asp700I	GAANNNNTTC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	204
BauI	CACGAG	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	131, 159
BccI	CCATC	2 cut(s)	160, 275
BclI	TGATCA	1 cut(s)	472
BfaI	CTAG	2 cut(s)	227, 423
BfmI	CTRYAG	2 cut(s)	145, 324
BfuAI	ACCTGC	1 cut(s)	342
BisI	GCNGC	2 cut(s)	145, 148
BlsI	GCNGC	2 cut(s)	146, 149
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	204
BmsI	GCATC	3 cut(s)	175, 246, 256
BpuEI	CTTGAG	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	292
BsaJI	CCNNGG	3 cut(s)	296, 359, 452
BseDI	CCNNGG	3 cut(s)	296, 359, 452
BseGI	GGATG	3 cut(s)	152, 190, 221
BseMII	CTCAG	1 cut(s)	190
BseRI	GAGGAG	3 cut(s)	46, 49, 83
BseXI	GCAGC	2 cut(s)	131, 159
BshFI	GGCC	2 cut(s)	132, 317
BsiSI	CCGG	1 cut(s)	162
BsnI	GGCC	2 cut(s)	132, 317
Bsp143I	GATC	2 cut(s)	456, 472
BspACI	CCGC	1 cut(s)	449
BspANI	GGCC	2 cut(s)	132, 317
BspCNI	CTCAG	1 cut(s)	189
BspMAI	CTGCAG	1 cut(s)	149
BspMI	ACCTGC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	464
BssECI	CCNNGG	3 cut(s)	296, 359, 452
BssMI	GATC	2 cut(s)	456, 472
BssNI	GRCGYC	1 cut(s)	292
BssSI	CACGAG	1 cut(s)	189
BssT1I	CCWWGG	2 cut(s)	296, 452
Bst2BI	CACGAG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	170, 325
Bst6I	CTCTTC	4 cut(s)	117, 140, 421, 450
BstACI	GRCGYC	1 cut(s)	292
BstDEI	CTNAG	1 cut(s)	176
BstDSI	CCRYGG	1 cut(s)	359
BstF5I	GGATG	3 cut(s)	152, 190, 221
BstKTI	GATC	2 cut(s)	459, 475
BstMBI	GATC	2 cut(s)	456, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstNSI	RCATGY	1 cut(s)	386
BstSFI	CTRYAG	2 cut(s)	145, 324
BstV1I	GCAGC	2 cut(s)	131, 159
BsuRI	GGCC	2 cut(s)	132, 317
BtgI	CCRYGG	1 cut(s)	359
BtsCI	GGATG	3 cut(s)	152, 190, 221
BveI	ACCTGC	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	204
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	1 cut(s)	383
CviJI	RGCY	6 cut(s)	39, 76, 132, 150, 317, 329
CviKI_1	RGCY	6 cut(s)	39, 76, 132, 150, 317, 329
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	2 cut(s)	458, 474
DpnII	GATC	2 cut(s)	456, 472
DraI	TTTAAA	1 cut(s)	124
Eam1104I	CTCTTC	4 cut(s)	117, 140, 421, 450
EarI	CTCTTC	4 cut(s)	117, 140, 421, 450
EciI	GGCGGA	1 cut(s)	438
Eco130I	CCWWGG	2 cut(s)	296, 452
Eco147I	AGGCCT	2 cut(s)	132, 317
Eco47I	GGWCC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	204
EcoRI	GAATTC	2 cut(s)	196, 237
EcoT14I	CCWWGG	2 cut(s)	296, 452
ErhI	CCWWGG	2 cut(s)	296, 452
FaeI	CATG	1 cut(s)	386
FaiI	YATR	9 cut(s)	182, 245, 247, 249, 384, 461, 486, 488, 490
FatI	CATG	1 cut(s)	382
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	2 cut(s)	145, 148
FokI	GGATG	3 cut(s)	139, 197, 208
Fsp4HI	GCNGC	2 cut(s)	145, 148
FspBI	CTAG	2 cut(s)	227, 423
GluI	GCNGC	2 cut(s)	145, 148
HaeIII	GGCC	2 cut(s)	132, 317
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	281
Hin1I	GRCGYC	1 cut(s)	292
Hin1II	CATG	1 cut(s)	386
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	1 cut(s)	109
HpaI	GTTAAC	1 cut(s)	412
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	2 cut(s)	359, 412
Hpy188I	TCNGA	3 cut(s)	53, 98, 477
Hpy8I	GTNNAC	2 cut(s)	359, 412
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	2 cut(s)	170, 325
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	7 cut(s)	15, 21, 147, 188, 276, 369, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpyF3I	CTNAG	1 cut(s)	176
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	292
Hsp92II	CATG	1 cut(s)	386
Ksp22I	TGATCA	1 cut(s)	472
KspAI	GTTAAC	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	456, 472
LmnI	GCTCC	1 cut(s)	36
LpnPI	CCDG	2 cut(s)	175, 337
Lsp1109I	GCAGC	2 cut(s)	131, 159
LweI	GCATC	3 cut(s)	175, 246, 256
MaeI	CTAG	2 cut(s)	227, 423
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	2 cut(s)	458, 474
MboI	GATC	2 cut(s)	456, 472
MboII	GAAGA	6 cut(s)	34, 104, 127, 408, 411, 437
MluCI	AATT	3 cut(s)	196, 237, 364
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	7 cut(s)	24, 27, 101, 104, 143, 195, 217
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	3 cut(s)	123, 320, 411
MslI	CAYNNNNRTG	2 cut(s)	248, 405
MspI	CCGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	45
NdeII	GATC	2 cut(s)	456, 472
NlaIII	CATG	1 cut(s)	386
NspI	RCATGY	1 cut(s)	386
PaqCI	CACCTGC	1 cut(s)	342
PceI	AGGCCT	2 cut(s)	132, 317
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 206
PdmI	GAANNNNTTC	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	146, 149
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PpuMI	RGGWCCY	1 cut(s)	204
Psp1406I	AACGTT	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	204
PspPPI	RGGWCCY	1 cut(s)	204
PstI	CTGCAG	1 cut(s)	149
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	2 cut(s)	248, 405
SaqAI	TTAA	3 cut(s)	123, 320, 411
SatI	GCNGC	2 cut(s)	145, 148
Sau3AI	GATC	2 cut(s)	456, 472
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	103
SetI	ASST	6 cut(s)	41, 93, 105, 206, 331, 356
SfaNI	GCATC	3 cut(s)	175, 246, 256
SfcI	CTRYAG	2 cut(s)	145, 324
SinI	GGWCC	1 cut(s)	204
SmiMI	CAYNNNNRTG	2 cut(s)	248, 405
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	3 cut(s)	196, 237, 364
SseBI	AGGCCT	2 cut(s)	132, 317
SsiI	CCGC	1 cut(s)	449
SspMI	CTAG	2 cut(s)	227, 423
StuI	AGGCCT	2 cut(s)	132, 317
StyI	CCWWGG	2 cut(s)	296, 452
TaaI	ACNGT	2 cut(s)	170, 325
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	4 cut(s)	66, 107, 200, 209
TasI	AATT	3 cut(s)	196, 237, 364
Tru1I	TTAA	3 cut(s)	123, 320, 411
Tru9I	TTAA	3 cut(s)	123, 320, 411
TseI	GCWGC	2 cut(s)	144, 147
TspGWI	ACGGA	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	2 cut(s)	196, 237
XceI	RCATGY	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	2 cut(s)	227, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.