Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004013

Physical Location & Seq

Genomic Coordinates Reverse (-)

24895543 .. 24898473

Gene Structure 2931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1182200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGAAGCACGAGAGAATTCCATATATGTGATGATGCCAGTTGATGCCTTTTGCATTGATGGTACAGGGCGTCCAAGGATTAGGAAAATCAAGGCCTTAACTGTAGCTCTGAAAGCACTCAAGTTGGCTGGTGTCCACGGAATTGCAGTTGAGGTTTGGTGGCCTCTTGCATATGATTGGTCTCTATATGAAGGGCTTTTCAAACTGATTTCTGACTCAGGTTTGAAGTTGCATGTTGCCTTGTCTTTTCACTCAAACGTTAACTCTTCTTCTAGCAGAAAAGGGGGTGTAACTCTTCCGCTTTGGATCATAGAGATTGGTGATCAGAATAAGCATATATATTATCGGGACCAAAATGGATTTTCCAATGATGATTATCTTACACTTGGAGTTGACCATGTTCCTCTCTTTTGCGGCCGGACTGCTCTCCAATGTTATGAAGATTTCTTGTCAGGTTTTGCTAAGAAATTTGAATCCTTAATTGGAACTGTGATAGAAGAAATTGGTGTTGGTCTTGGATGTTACTGTTACACTAGAACCACAAGTATGAAGCCACGCATGATGGGCGACCTAAAGATGGCTGTAGGCAAGGAAGGAAAGCCTCAGTGGGGAGGGAAGGGACCACAAAATGCTGGCTGTTACAACAGTCTCCCATCTGAAGTTCCATTCTTTGAAGAGGGAGAGGAAAGCATTCTTTCTGATTATGGGTGTTTTTTCCTTGAATGGTACAGTGGTCGGTTGCTCCATCATGCAGATGATATTCTTGCAAAGGCAGCTAACATTCTGAAGAAATATCAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

268

Amino Acids

29.84

Weight (kDa)

6.18

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	10 - 182	1.7e-32	Glycosyl hydrolase family 14
Glyco_hydro_14	PF01373	176 - 262	2.7e-11	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27420
fragaria_vesca	FvH4_3g20680 FvH4_3g29210
malus_domestica	MD03G1138200.v1.1 MD03G1177900.v1.1 MD03G1180300.v1.1 MD03G1181200.v1.1 MD03G1182200.v1.1 MD03G1222900.v1.1 MD11G1240300.v1.1
prunus_persica	Prupe.4G186700_v2.0.a1 Prupe.8G022900_v2.0.a1
pyrus_communis	pycom03g13470 pycom11g21230
rosa_chinensis	RchiOBHm_Chr5g0034741 RchiOBHm_Chr5g0053511 RchiOBHm_Chr5g0053631
rosa_laevigata	RLG00000033574 RLG00000034891
rosa_multiflora	Rmu_sc0002460.1_g000057 Rmu_sc0003228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045590
rosa_rugosa	Rorug05G0147900
rosa_samantha	Rh5AG240600 Rh5AG351700 Rh5AG352400 Rh5BG240700 Rh5BG364000 Rh5CG271700 Rh5DG249000 Rh5DG378600
rosa_wichuraiana	Rw5G021980 Rw5G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	299, 414
AclI	AACGTT	1 cut(s)	258
AclWI	GGATC	1 cut(s)	314
AcoI	YGGCCR	1 cut(s)	415
AcsI	RAATTY	2 cut(s)	16, 467
AcuI	CTGAAG	1 cut(s)	678
AcyI	GRCGYC	1 cut(s)	70
AfaI	GTAC	2 cut(s)	64, 728
AfiI	CCNNNNNNNGG	2 cut(s)	577, 608
AgsI	TTSAA	5 cut(s)	202, 226, 473, 674, 722
AjuI	GAANNNNNNNTTGG	4 cut(s)	465, 492, 497, 524
AluBI	AGCT	2 cut(s)	107, 776
AluI	AGCT	2 cut(s)	107, 776
Alw26I	GTCTC	2 cut(s)	186, 653
AlwI	GGATC	1 cut(s)	314
AoxI	GGCC	3 cut(s)	93, 161, 415
ApeKI	GCWGC	1 cut(s)	773
ApoI	RAATTY	2 cut(s)	16, 467
Asp700I	GAANNNNTTC	1 cut(s)	690
AspS9I	GGNCC	2 cut(s)	349, 620
AsuHPI	GGTGA	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	349, 620
BaeI	ACNNNNGTAYC	2 cut(s)	718, 751
BauI	CACGAG	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	785
BccI	CCATC	5 cut(s)	53, 556, 571, 661, 753
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	2 cut(s)	186, 653
BfaI	CTAG	2 cut(s)	273, 534
BfmI	CTRYAG	2 cut(s)	102, 582
BisI	GCNGC	2 cut(s)	415, 774
BlsI	GCNGC	2 cut(s)	416, 775
Bme18I	GGWCC	2 cut(s)	349, 620
BmgT120I	GGNCC	2 cut(s)	349, 620
BmiI	GGNNCC	2 cut(s)	350, 621
BmsI	GCATC	2 cut(s)	24, 34
BpuEI	CTTGAG	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	74, 136
Bsc4I	CCNNNNNNNGG	2 cut(s)	577, 608
Bse1I	ACTGG	1 cut(s)	38
Bse8I	GATNNNNATC	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	74, 136
BseGI	GGATG	1 cut(s)	524
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	2 cut(s)	577, 608
BseMII	CTCAG	2 cut(s)	231, 617
BseNI	ACTGG	1 cut(s)	38
BseX3I	CGGCCG	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	785
Bsh1285I	CGRYCG	1 cut(s)	418
BshFI	GGCC	3 cut(s)	95, 163, 417
BsiEI	CGRYCG	1 cut(s)	418
BsiSI	CCGG	1 cut(s)	418
BslFI	GGGAC	2 cut(s)	362, 633
BslI	CCNNNNNNNGG	2 cut(s)	577, 608
BsmAI	GTCTC	2 cut(s)	186, 653
BsmFI	GGGAC	2 cut(s)	362, 633
BsmI	GAATGC	1 cut(s)	690
BsnI	GGCC	3 cut(s)	95, 163, 417
Bso31I	GGTCTC	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	306, 322
BspACI	CCGC	2 cut(s)	299, 414
BspANI	GGCC	3 cut(s)	95, 163, 417
BspCNI	CTCAG	2 cut(s)	230, 616
BspLI	GGNNCC	2 cut(s)	350, 621
BspPI	GGATC	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	74, 136
BssMI	GATC	2 cut(s)	306, 322
BssNI	GRCGYC	1 cut(s)	70
BssSI	CACGAG	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	74
Bst2BI	CACGAG	1 cut(s)	9
Bst4CI	ACNGT	5 cut(s)	103, 490, 527, 647, 731
Bst6I	CTCTTC	3 cut(s)	271, 300, 669
BstACI	GRCGYC	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	634
BstDEI	CTNAG	3 cut(s)	217, 462, 603
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	524
BstKTI	GATC	2 cut(s)	309, 325
BstMAI	GTCTC	2 cut(s)	186, 653
BstMBI	GATC	2 cut(s)	306, 322
BstMCI	CGRYCG	1 cut(s)	418
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 564, 773
BstNSI	RCATGY	1 cut(s)	236
BstSFI	CTRYAG	2 cut(s)	102, 582
BstV1I	GCAGC	1 cut(s)	785
BstZI	CGGCCG	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	95, 163, 417
BtgI	CCRYGG	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	524
BtsIMutI	CAGTG	2 cut(s)	611, 736
Cac8I	GCNNGC	1 cut(s)	634
Cfr13I	GGNCC	2 cut(s)	349, 620
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	63, 727
CviAII	CATG	4 cut(s)	233, 398, 559, 749
CviQI	GTAC	2 cut(s)	63, 727
DdeI	CTNAG	3 cut(s)	217, 462, 603
DpnI	GATC	2 cut(s)	308, 324
DpnII	GATC	2 cut(s)	306, 322
EaeI	YGGCCR	1 cut(s)	415
EagI	CGGCCG	1 cut(s)	415
Eam1104I	CTCTTC	3 cut(s)	271, 300, 669
EarI	CTCTTC	3 cut(s)	271, 300, 669
EclXI	CGGCCG	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	74
Eco147I	AGGCCT	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	186
Eco47I	GGWCC	2 cut(s)	349, 620
Eco52I	CGGCCG	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	678
EcoRI	GAATTC	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	4 cut(s)	236, 401, 562, 752
FaqI	GGGAC	2 cut(s)	362, 633
FatI	CATG	4 cut(s)	232, 397, 558, 748
FauNDI	CATATG	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	415, 774
FokI	GGATG	1 cut(s)	531
Fsp4HI	GCNGC	2 cut(s)	415, 774
FspBI	CTAG	2 cut(s)	273, 534
GluI	GCNGC	2 cut(s)	415, 774
HaeIII	GGCC	3 cut(s)	95, 163, 417
HapII	CCGG	1 cut(s)	418
HgaI	GACGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	70
Hin1II	CATG	4 cut(s)	236, 401, 562, 752
HincII	GTYRAC	2 cut(s)	262, 394
HindII	GTYRAC	2 cut(s)	262, 394
HinfI	GANTC	2 cut(s)	215, 473
HpaI	GTTAAC	1 cut(s)	262
HpaII	CCGG	1 cut(s)	418
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	3 cut(s)	136, 262, 394
Hpy188I	TCNGA	6 cut(s)	111, 214, 327, 658, 700, 786
Hpy188III	TCNNGA	2 cut(s)	347, 797
Hpy8I	GTNNAC	3 cut(s)	136, 262, 394
HpyAV	CCTTC	3 cut(s)	185, 587, 610
HpyCH4III	ACNGT	5 cut(s)	103, 490, 527, 647, 731
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	6 cut(s)	54, 146, 170, 232, 752, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 564, 773
HpyF3I	CTNAG	3 cut(s)	217, 462, 603
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	70
Hsp92II	CATG	4 cut(s)	236, 401, 562, 752
Ksp22I	TGATCA	1 cut(s)	322
KspAI	GTTAAC	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	306, 322
LmnI	GCTCC	1 cut(s)	747
LpnPI	CCDG	7 cut(s)	51, 51, 114, 204, 431, 438, 618
Lsp1109I	GCAGC	1 cut(s)	785
LweI	GCATC	2 cut(s)	24, 34
MaeI	CTAG	2 cut(s)	273, 534
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	4 cut(s)	289, 521, 527, 638
MalI	GATC	2 cut(s)	308, 324
MboI	GATC	2 cut(s)	306, 322
MboII	GAAGA	7 cut(s)	258, 261, 287, 452, 509, 686, 799
MluCI	AATT	5 cut(s)	16, 141, 467, 480, 501
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	7 cut(s)	145, 174, 414, 605, 612, 670, 676
MroXI	GAANNNNTTC	1 cut(s)	690
MseI	TTAA	3 cut(s)	98, 261, 479
MslI	CAYNNNNRTG	3 cut(s)	26, 545, 753
MspI	CCGG	1 cut(s)	418
Mva1269I	GAATGC	1 cut(s)	690
MwoI	GCNNNNNNNGC	3 cut(s)	113, 564, 773
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	2 cut(s)	306, 322
NlaIII	CATG	4 cut(s)	236, 401, 562, 752
NlaIV	GGNNCC	2 cut(s)	350, 621
NspI	RCATGY	1 cut(s)	236
PceI	AGGCCT	1 cut(s)	95
PctI	GAATGC	1 cut(s)	690
PdmI	GAANNNNTTC	1 cut(s)	690
PfeI	GAWTC	1 cut(s)	473
PkrI	GCNGC	2 cut(s)	416, 775
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
Psp1406I	AACGTT	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	350, 621
PspPI	GGNCC	2 cut(s)	349, 620
RsaI	GTAC	2 cut(s)	64, 728
RsaNI	GTAC	2 cut(s)	63, 727
RseI	CAYNNNNRTG	3 cut(s)	26, 545, 753
SaqAI	TTAA	3 cut(s)	98, 261, 479
SatI	GCNGC	2 cut(s)	415, 774
Sau3AI	GATC	2 cut(s)	306, 322
Sau96I	GGNCC	2 cut(s)	349, 620
SchI	GAGTC	1 cut(s)	209
SetI	ASST	7 cut(s)	109, 156, 223, 261, 457, 573, 778
SfaNI	GCATC	2 cut(s)	24, 34
SfcI	CTRYAG	2 cut(s)	102, 582
SinI	GGWCC	2 cut(s)	349, 620
SmiMI	CAYNNNNRTG	3 cut(s)	26, 545, 753
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	5 cut(s)	16, 141, 467, 480, 501
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	2 cut(s)	299, 414
SspMI	CTAG	2 cut(s)	273, 534
StuI	AGGCCT	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	5 cut(s)	103, 490, 527, 647, 731
TaiI	ACGT	1 cut(s)	261
TasI	AATT	5 cut(s)	16, 141, 467, 480, 501
TauI	GCSGC	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	3 cut(s)	98, 261, 479
Tru9I	TTAA	3 cut(s)	98, 261, 479
TscAI	CASTG	2 cut(s)	611, 736
TseI	GCWGC	1 cut(s)	773
TspDTI	ATGAA	3 cut(s)	204, 453, 563
TspGWI	ACGGA	1 cut(s)	153
TspRI	CASTG	2 cut(s)	611, 736
VpaK11BI	GGWCC	2 cut(s)	349, 620
XapI	RAATTY	2 cut(s)	16, 467
XceI	RCATGY	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	690
XspI	CTAG	2 cut(s)	273, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.