Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004013

Physical Location & Seq

Genomic Coordinates Reverse (-)

14179486 .. 14182058

Gene Structure 2573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1138200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCCTTCTGTATTGATGGTGGGGCATCCAAGGATTAGGAAAATCAAGGCCTTAACTGTAGCTCTAAAAGCACTCAAGTTGGCATGTGTCCACGGAATTGCAGTTGAGGTTTGGTGGGGAATCGTAGAGCGTTTCTCTCCTCTTGCATATGATTGGTCTCTATATGAAGAGATTTTCAAACTGGTTTCTGACTCAGGTTGGATTGGTGATCAGAATAAACATATATATTATTGGGACCAAAATGGATTTTCCAATGATGATTATCTTACACTGGGAGTTGACCATGTTCCTCTCTTTTGTGGACGGACTGCCCTCCATTGTTATGAAGATTTCATGTCAAATATCCTGCACATCCTTTTGGTGATGGGAGACCTTAAGTTGGCTGCACGCAAGGAAGGAAAACCTCAGTGGGAAGAGAAGGGACCACAAAAGGCTGGCTGTTACAACAGTCTCCCATCTGAAGTTCCTATCTTTGGAGAGGGAGAGGAAAGTTTTGTTTCTGATTATGGGTGTTTTTTCCTTAAATGGTACAGTGGTAGGTTGCTCCATCATGCAGATAATATTCTTGCAAAGGCAGCTAACATTCTGAAGAAATATCAAGAAAACAAGCAAACTTCAATTGTATTGGCGGCTAAAATTGGTGGAATATATTGGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

220

Amino Acids

24.97

Weight (kDa)

6.7

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	12 - 66	4.3e-10	Glycosyl hydrolase family 14
Glyco_hydro_14	PF01373	71 - 114	3e-06	Glycosyl hydrolase family 14
Glyco_hydro_14	PF01373	136 - 218	3.8e-11	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27420
fragaria_vesca	FvH4_3g20680 FvH4_3g29210
malus_domestica	MD03G1138200.v1.1 MD03G1177900.v1.1 MD03G1180300.v1.1 MD03G1181200.v1.1 MD03G1182200.v1.1 MD03G1222900.v1.1 MD11G1240300.v1.1
prunus_persica	Prupe.4G186700_v2.0.a1 Prupe.8G022900_v2.0.a1
pyrus_communis	pycom03g13470 pycom11g21230
rosa_chinensis	RchiOBHm_Chr5g0034741 RchiOBHm_Chr5g0053511 RchiOBHm_Chr5g0053631
rosa_laevigata	RLG00000033574 RLG00000034891
rosa_multiflora	Rmu_sc0002460.1_g000057 Rmu_sc0003228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045590
rosa_rugosa	Rorug05G0147900
rosa_samantha	Rh5AG240600 Rh5AG351700 Rh5AG352400 Rh5BG240700 Rh5BG364000 Rh5CG271700 Rh5DG249000 Rh5DG378600
rosa_wichuraiana	Rw5G021980 Rw5G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	629
AcuI	CTGAAG	2 cut(s)	480, 608
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	2 cut(s)	379, 473
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	2 cut(s)	178, 618
AluBI	AGCT	2 cut(s)	62, 578
AluI	AGCT	2 cut(s)	62, 578
Alw26I	GTCTC	3 cut(s)	162, 363, 455
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	2 cut(s)	383, 575
AspS9I	GGNCC	2 cut(s)	235, 422
AsuHPI	GGTGA	2 cut(s)	218, 373
AvaII	GGWCC	2 cut(s)	235, 422
BaeI	ACNNNNGTAYC	2 cut(s)	520, 553
BbvI	GCAGC	2 cut(s)	370, 587
BccI	CCATC	4 cut(s)	10, 358, 463, 555
BclI	TGATCA	1 cut(s)	208
BcoDI	GTCTC	3 cut(s)	162, 363, 455
BfmI	CTRYAG	1 cut(s)	57
BfrI	CTTAAG	1 cut(s)	374
BisI	GCNGC	3 cut(s)	384, 576, 630
BlsI	GCNGC	3 cut(s)	385, 577, 631
Bme18I	GGWCC	2 cut(s)	235, 422
BmgT120I	GGNCC	2 cut(s)	235, 422
BmiI	GGNNCC	2 cut(s)	236, 423
BmrI	ACTGGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	34
BmuI	ACTGGG	1 cut(s)	281
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpuEI	CTTGAG	1 cut(s)	59
BsaBI	GATNNNNATC	1 cut(s)	261
BsaI	GGTCTC	2 cut(s)	162, 363
BsaJI	CCNNGG	2 cut(s)	29, 91
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 473
Bse1I	ACTGG	2 cut(s)	186, 276
Bse8I	GATNNNNATC	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	29, 91
BseGI	GGATG	2 cut(s)	25, 351
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	379, 473
BseMII	CTCAG	2 cut(s)	207, 419
BseNI	ACTGG	2 cut(s)	186, 276
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	370, 587
BsgI	GTGCAG	2 cut(s)	332, 369
BshFI	GGCC	1 cut(s)	50
BslFI	GGGAC	2 cut(s)	248, 435
BslI	CCNNNNNNNGG	2 cut(s)	379, 473
BsmAI	GTCTC	3 cut(s)	162, 363, 455
BsmFI	GGGAC	2 cut(s)	248, 435
BsnI	GGCC	1 cut(s)	50
Bso31I	GGTCTC	2 cut(s)	162, 363
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	629
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	206, 418
BspLI	GGNNCC	2 cut(s)	236, 423
BspTI	CTTAAG	1 cut(s)	374
BspTNI	GGTCTC	2 cut(s)	162, 363
BsrI	ACTGG	2 cut(s)	186, 276
BssECI	CCNNGG	2 cut(s)	29, 91
BssMI	GATC	1 cut(s)	208
BssT1I	CCWWGG	1 cut(s)	29
Bst4CI	ACNGT	3 cut(s)	58, 449, 533
Bst6I	CTCTTC	2 cut(s)	162, 408
BstAFI	CTTAAG	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	388, 436
BstDEI	CTNAG	2 cut(s)	193, 405
BstDSI	CCRYGG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	25, 351
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	3 cut(s)	162, 363, 455
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 575
BstNSI	RCATGY	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	370, 587
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	25, 351
BtsIMutI	CAGTG	3 cut(s)	269, 413, 538
Cac8I	GCNNGC	2 cut(s)	388, 436
Cfr13I	GGNCC	2 cut(s)	235, 422
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	4 cut(s)	84, 284, 334, 551
CviJI	RGCY	7 cut(s)	50, 62, 383, 434, 438, 578, 632
CviKI_1	RGCY	7 cut(s)	50, 62, 383, 434, 438, 578, 632
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	2 cut(s)	193, 405
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
Eam1104I	CTCTTC	2 cut(s)	162, 408
EarI	CTCTTC	2 cut(s)	162, 408
Eco130I	CCWWGG	1 cut(s)	29
Eco147I	AGGCCT	1 cut(s)	50
Eco31I	GGTCTC	2 cut(s)	162, 363
Eco47I	GGWCC	2 cut(s)	235, 422
Eco57I	CTGAAG	2 cut(s)	480, 608
EcoT14I	CCWWGG	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	29
FaeI	CATG	4 cut(s)	87, 287, 337, 554
FaqI	GGGAC	2 cut(s)	248, 435
FatI	CATG	4 cut(s)	83, 283, 333, 550
FauNDI	CATATG	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	3 cut(s)	384, 576, 630
FokI	GGATG	2 cut(s)	12, 338
Fsp4HI	GCNGC	3 cut(s)	384, 576, 630
GluI	GCNGC	3 cut(s)	384, 576, 630
HaeIII	GGCC	1 cut(s)	50
Hin1II	CATG	4 cut(s)	87, 287, 337, 554
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	2 cut(s)	120, 191
HphI	GGTGA	2 cut(s)	218, 373
Hpy166II	GTNNAC	3 cut(s)	91, 280, 302
Hpy188I	TCNGA	5 cut(s)	190, 213, 460, 502, 588
Hpy188III	TCNNGA	1 cut(s)	599
Hpy8I	GTNNAC	3 cut(s)	91, 280, 302
HpyAV	CCTTC	3 cut(s)	15, 389, 412
HpyCH4III	ACNGT	3 cut(s)	58, 449, 533
HpyCH4V	TGCA	6 cut(s)	101, 146, 349, 386, 554, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 575
HpyF3I	CTNAG	2 cut(s)	193, 405
Hsp92II	CATG	4 cut(s)	87, 287, 337, 554
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	549
LpnPI	CCDG	5 cut(s)	167, 180, 257, 359, 420
Lsp1109I	GCAGC	2 cut(s)	370, 587
LweI	GCATC	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	4 cut(s)	179, 338, 425, 601
MfeI	CAATTG	1 cut(s)	618
MluCI	AATT	3 cut(s)	96, 618, 636
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	7 cut(s)	100, 150, 300, 323, 414, 472, 478
MseI	TTAA	3 cut(s)	53, 375, 522
MslI	CAYNNNNRTG	1 cut(s)	321
MspCI	CTTAAG	1 cut(s)	374
MunI	CAATTG	1 cut(s)	618
MwoI	GCNNNNNNNGC	2 cut(s)	68, 575
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	4 cut(s)	87, 287, 337, 554
NlaIV	GGNNCC	2 cut(s)	236, 423
NspI	RCATGY	1 cut(s)	87
PceI	AGGCCT	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	120
PkrI	GCNGC	3 cut(s)	385, 577, 631
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PspN4I	GGNNCC	2 cut(s)	236, 423
PspPI	GGNCC	2 cut(s)	235, 422
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	3 cut(s)	53, 375, 522
SatI	GCNGC	3 cut(s)	384, 576, 630
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	2 cut(s)	235, 422
SchI	GAGTC	1 cut(s)	185
SetI	ASST	7 cut(s)	64, 111, 199, 375, 406, 542, 580
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	57
SinI	GGWCC	2 cut(s)	235, 422
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	2 cut(s)	74, 374
SmoI	CTYRAG	2 cut(s)	74, 374
Sse9I	AATT	3 cut(s)	96, 618, 636
SseBI	AGGCCT	1 cut(s)	50
SsiI	CCGC	1 cut(s)	629
SspI	AATATT	1 cut(s)	562
StuI	AGGCCT	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	3 cut(s)	58, 449, 533
TasI	AATT	3 cut(s)	96, 618, 636
TauI	GCSGC	1 cut(s)	632
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	3 cut(s)	53, 375, 522
Tru9I	TTAA	3 cut(s)	53, 375, 522
TscAI	CASTG	3 cut(s)	276, 413, 538
TseI	GCWGC	2 cut(s)	383, 575
TspDTI	ATGAA	3 cut(s)	180, 322, 339
TspGWI	ACGGA	2 cut(s)	108, 319
TspRI	CASTG	3 cut(s)	276, 413, 538
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	2 cut(s)	235, 422
XceI	RCATGY	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.