FvH4_3g29830

Cytochrome c oxidase subunit VII

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011983
Physical Location & Seq
Reverse (-)
22892964 .. 22897114
4151 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29830.t1

Sequence Viewer

Length: 588 bp
ATGCAACCTCTCCCTCCCTTCACCTATGTCATGGCCTTCGCCCCCGCCACCGTCGCCAACCTCGGCCTAGGTTTTACCTTCCTCGGATGCGTCGTCGACGGCCTTGGTGACTTCGTCTCCCTCACCGTCGACCTCTGCAAGTCCTCCCCAGCGAGATCGCCATCTCCGAGATCTCTAGCGACCATAACACTGTTTCCCTCACCGTCGACCACAGACGAACTTCCTCTGGATCTACAACGGGATCGCCGCCATCGAGGACGCAGACGGCATTATAACACTAGAATTCTCCTTCTTCATTTTCACATCCCCAGTCCGCAGCAGCGTCGAGGTTTCTCTCATCCCTCATTGCTCCATTCCCGGTCACTCCCAATTTCACACTACAGGATGTCAGAAGCCCCATTCAGACCACGCGAGCAGTTGATGGAGAAGCAGAAATATTTCCAAAGCATCCACAAACACACATATCTGAAGGGACCTTTTGATAAGGTCACCTCTGTTGCCATTCCAGCTGCTTTGGCTGCCACTTCTTTGTTCCTTATTGGACGAGGTATCTACAACATGTCACATGGGATCGGGAAGAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COX7a

Protein Analysis

196

Amino Acids

21.94

Weight (kDa)

10.35

Isoelectric Point (pI)

76.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX7a PF02238 140 - 190 5.6e-14 Cytochrome c oxidase subunit VII
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AccI GTMKAC 3 cut(s) 96, 129, 206
AccII CGCG 1 cut(s) 411
AciI CCGC 3 cut(s) 45, 247, 314
AclWI GGATC 3 cut(s) 237, 249, 578
AcsI RAATTY 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 488
AflIII ACRYGT 1 cut(s) 558
AluBI AGCT 1 cut(s) 509
AluI AGCT 1 cut(s) 509
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 3 cut(s) 237, 249, 578
AoxI GGCC 3 cut(s) 33, 64, 100
ApeKI GCWGC 4 cut(s) 316, 319, 509, 518
ApoI RAATTY 1 cut(s) 282
Asp700I GAANNNNTTC 1 cut(s) 437
AspA2I CCTAGG 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 473
AsuC2I CCSGG 1 cut(s) 358
AsuHPI GGTGA 5 cut(s) 13, 115, 119, 192, 481
AvaII GGWCC 1 cut(s) 473
AvrII CCTAGG 1 cut(s) 67
BbvI GCAGC 4 cut(s) 328, 331, 496, 505
BccI CCATC 3 cut(s) 169, 258, 415
BceAI ACGGC 2 cut(s) 115, 281
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BcnI CCSGG 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 3 cut(s) 68, 176, 279
BfmI CTRYAG 1 cut(s) 379
BglII AGATCT 1 cut(s) 170
BisI GCNGC 5 cut(s) 247, 317, 320, 510, 519
BlnI CCTAGG 1 cut(s) 67
BlsI GCNGC 5 cut(s) 248, 318, 321, 511, 520
Bme1390I CCNGG 1 cut(s) 358
Bme18I GGWCC 1 cut(s) 473
BmgT120I GGNCC 1 cut(s) 473
BmiI GGNNCC 1 cut(s) 474
BmrFI CCNGG 1 cut(s) 358
BmrI ACTGGG 1 cut(s) 303
BmsI GCATC 2 cut(s) 77, 456
BmuI ACTGGG 1 cut(s) 303
BpuMI CCSGG 1 cut(s) 358
BsaBI GATNNNNATC 1 cut(s) 160
BsaJI CCNNGG 4 cut(s) 61, 67, 82, 103
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bse1I ACTGG 1 cut(s) 309
Bse3DI GCAATG 1 cut(s) 344
Bse8I GATNNNNATC 1 cut(s) 160
BseDI CCNNGG 4 cut(s) 61, 67, 82, 103
BseGI GGATG 5 cut(s) 92, 303, 337, 390, 447
BseJI GATNNNNATC 1 cut(s) 160
BseMI GCAATG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 309
BseXI GCAGC 4 cut(s) 328, 331, 496, 505
BseYI CCCAGC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 411
BshFI GGCC 3 cut(s) 35, 66, 102
BsiSI CCGG 1 cut(s) 358
BslFI GGGAC 1 cut(s) 486
BsmAI GTCTC 1 cut(s) 121
BsmBI CGTCTC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 486
BsnI GGCC 3 cut(s) 35, 66, 102
Bsp143I GATC 5 cut(s) 155, 170, 229, 241, 570
BspACI CCGC 3 cut(s) 45, 247, 314
BspANI GGCC 3 cut(s) 35, 66, 102
BspFNI CGCG 1 cut(s) 411
BspLI GGNNCC 1 cut(s) 474
BspPI GGATC 3 cut(s) 237, 249, 578
BsrDI GCAATG 1 cut(s) 344
BsrI ACTGG 1 cut(s) 309
BssECI CCNNGG 4 cut(s) 61, 67, 82, 103
BssMI GATC 5 cut(s) 155, 170, 229, 241, 570
BssT1I CCWWGG 2 cut(s) 67, 103
Bst4CI ACNGT 4 cut(s) 52, 127, 192, 204
BstC8I GCNNGC 1 cut(s) 413
BstEII GGTNACC 1 cut(s) 487
BstF5I GGATG 5 cut(s) 92, 303, 337, 390, 447
BstFNI CGCG 1 cut(s) 411
BstKTI GATC 5 cut(s) 158, 173, 232, 244, 573
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 5 cut(s) 155, 170, 229, 241, 570
BstMWI GCNNNNNNNGC 4 cut(s) 53, 506, 515, 518
BstNSI RCATGY 1 cut(s) 562
BstPI GGTNACC 1 cut(s) 487
BstSCI CCNGG 1 cut(s) 356
BstSFI CTRYAG 1 cut(s) 379
BstUI CGCG 1 cut(s) 411
BstV1I GCAGC 4 cut(s) 328, 331, 496, 505
BstX2I RGATCY 2 cut(s) 170, 229
BstYI RGATCY 2 cut(s) 170, 229
BsuRI GGCC 3 cut(s) 35, 66, 102
BtsCI GGATG 5 cut(s) 92, 303, 337, 390, 447
BtsIMutI CAGTG 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 413
Cfr13I GGNCC 1 cut(s) 473
CseI GACGC 3 cut(s) 79, 267, 311
CviAII CATG 3 cut(s) 31, 559, 566
CviJI RGCY 6 cut(s) 35, 66, 102, 395, 509, 518
CviKI_1 RGCY 6 cut(s) 35, 66, 102, 395, 509, 518
DpnI GATC 5 cut(s) 157, 172, 231, 243, 572
DpnII GATC 5 cut(s) 155, 170, 229, 241, 570
Eco130I CCWWGG 2 cut(s) 67, 103
Eco47I GGWCC 1 cut(s) 473
Eco57I CTGAAG 1 cut(s) 488
Eco91I GGTNACC 1 cut(s) 487
EcoO109I RGGNCCY 1 cut(s) 473
EcoO65I GGTNACC 1 cut(s) 487
EcoRI GAATTC 1 cut(s) 282
EcoT14I CCWWGG 2 cut(s) 67, 103
ErhI CCWWGG 2 cut(s) 67, 103
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 3 cut(s) 34, 562, 569
FaiI YATR 7 cut(s) 27, 32, 185, 273, 463, 560, 567
FaqI GGGAC 1 cut(s) 486
FatI CATG 3 cut(s) 30, 558, 565
FauI CCCGC 1 cut(s) 52
FblI GTMKAC 3 cut(s) 96, 129, 206
Fnu4HI GCNGC 5 cut(s) 247, 317, 320, 510, 519
FokI GGATG 5 cut(s) 99, 290, 324, 397, 434
Fsp4HI GCNGC 5 cut(s) 247, 317, 320, 510, 519
FspBI CTAG 3 cut(s) 68, 176, 279
GluI GCNGC 5 cut(s) 247, 317, 320, 510, 519
GsaI CCCAGC 1 cut(s) 152
HaeIII GGCC 3 cut(s) 35, 66, 102
HapII CCGG 1 cut(s) 358
HgaI GACGC 3 cut(s) 79, 267, 311
Hin1II CATG 3 cut(s) 34, 562, 569
HincII GTYRAC 3 cut(s) 97, 130, 207
HindII GTYRAC 3 cut(s) 97, 130, 207
HpaII CCGG 1 cut(s) 358
HphI GGTGA 5 cut(s) 13, 115, 119, 192, 481
Hpy166II GTNNAC 3 cut(s) 97, 130, 207
Hpy188I TCNGA 5 cut(s) 86, 168, 391, 404, 468
Hpy188III TCNNGA 2 cut(s) 227, 574
Hpy8I GTNNAC 3 cut(s) 97, 130, 207
Hpy99I CGWCG 7 cut(s) 56, 95, 98, 101, 131, 208, 327
HpyAV CCTTC 6 cut(s) 28, 46, 88, 299, 463, 574
HpyCH4III ACNGT 4 cut(s) 52, 127, 192, 204
HpyCH4V TGCA 2 cut(s) 4, 138
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 506, 515, 518
Hsp92II CATG 3 cut(s) 34, 562, 569
Kzo9I GATC 5 cut(s) 155, 170, 229, 241, 570
LmnI GCTCC 1 cut(s) 354
LpnPI CCDG 6 cut(s) 162, 212, 322, 367, 371, 519
Lsp1109I GCAGC 4 cut(s) 328, 331, 496, 505
LweI GCATC 2 cut(s) 77, 456
MaeI CTAG 3 cut(s) 68, 176, 279
MaeIII GTNAC 4 cut(s) 107, 360, 487, 561
MalI GATC 5 cut(s) 157, 172, 231, 243, 572
MboI GATC 5 cut(s) 155, 170, 229, 241, 570
MboII GAAGA 1 cut(s) 284
MflI RGATCY 2 cut(s) 170, 229
MluCI AATT 2 cut(s) 282, 369
MroXI GAANNNNTTC 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 509
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 1 cut(s) 358
MvnI CGCG 1 cut(s) 411
MwoI GCNNNNNNNGC 4 cut(s) 53, 506, 515, 518
NciI CCSGG 1 cut(s) 358
NdeII GATC 5 cut(s) 155, 170, 229, 241, 570
NlaIII CATG 3 cut(s) 34, 562, 569
NlaIV GGNNCC 1 cut(s) 474
NmeAIII GCCGAG 1 cut(s) 42
NmuCI GTSAC 4 cut(s) 107, 360, 487, 561
NspI RCATGY 1 cut(s) 562
PciI ACATGT 1 cut(s) 558
PcsI WCGNNNNNNNCGW 3 cut(s) 90, 164, 250
PdmI GAANNNNTTC 1 cut(s) 437
PflFI GACNNNGTC 1 cut(s) 113
PkrI GCNGC 5 cut(s) 248, 318, 321, 511, 520
PpuMI RGGWCCY 1 cut(s) 473
PscI ACATGT 1 cut(s) 558
PsiI TTATAA 1 cut(s) 273
Psp5II RGGWCCY 1 cut(s) 473
PspEI GGTNACC 1 cut(s) 487
PspFI CCCAGC 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 474
PspPI GGNCC 1 cut(s) 473
PspPPI RGGWCCY 1 cut(s) 473
PsuI RGATCY 2 cut(s) 170, 229
PsyI GACNNNGTC 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 509
SalI GTCGAC 3 cut(s) 95, 128, 205
SatI GCNGC 5 cut(s) 247, 317, 320, 510, 519
Sau3AI GATC 5 cut(s) 155, 170, 229, 241, 570
Sau96I GGNCC 1 cut(s) 473
ScrFI CCNGG 1 cut(s) 358
SfaNI GCATC 2 cut(s) 77, 456
SfcI CTRYAG 1 cut(s) 379
SgrDI CGTCGACG 1 cut(s) 95
SinI GGWCC 1 cut(s) 473
Sse9I AATT 2 cut(s) 282, 369
SsiI CCGC 3 cut(s) 45, 247, 314
SspI AATATT 1 cut(s) 437
SspMI CTAG 3 cut(s) 68, 176, 279
StyD4I CCNGG 1 cut(s) 356
StyI CCWWGG 2 cut(s) 67, 103
TaaI ACNGT 4 cut(s) 52, 127, 192, 204
TaqI TCGA 5 cut(s) 96, 129, 206, 253, 325
TasI AATT 2 cut(s) 282, 369
TauI GCSGC 1 cut(s) 249
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 4 cut(s) 107, 360, 487, 561
TseI GCWGC 4 cut(s) 316, 319, 509, 518
Tsp45I GTSAC 4 cut(s) 107, 360, 487, 561
TspDTI ATGAA 1 cut(s) 284
TspRI CASTG 1 cut(s) 195
Tth111I GACNNNGTC 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 473
XapI RAATTY 1 cut(s) 282
XceI RCATGY 1 cut(s) 562
XmaJI CCTAGG 1 cut(s) 67
XmiI GTMKAC 3 cut(s) 96, 129, 206
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 3 cut(s) 68, 176, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.