MD11G1159300.v1.1

Cytochrome c oxidase subunit VII

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011983
Physical Location & Seq
Reverse (-)
15574548 .. 15576756
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1159300.v1.1.491

Sequence Viewer

Length: 342 bp
ATGGCAAGATTACATTTGTTGACCGCAACAAACTGTACAAATATAACTGGAGAGCATTGCACTGGAAATCTCCATTTCATTTTTCACCTTCTTCGTCTTCCTGATTGCTTTCCAGCTCCGGTCACTCGCAATTTCACGATGTCAGAAACACCCTTCCGACCACGTGAGCAGCTCTATGAGAAGCAAAAGATTTTCCAAAGCATCCACAAACACACATACCTGAAGGGACCGTTTGATAAGATTACCTCTGTTGCCATTCCAGCTGCTTTAGCTGCTACTTCGTTGTTCCTTATTGGACGAGGGATCTACAACATGTCTCATGGGATTGGAAAGAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COX7a

Protein Analysis

114

Amino Acids

12.78

Weight (kDa)

9.55

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX7a PF02238 58 - 108 3.4e-14 Cytochrome c oxidase subunit VII
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 24
AclWI GGATC 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 242
AcvI CACGTG 1 cut(s) 164
AfaI GTAC 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 312
AluBI AGCT 4 cut(s) 116, 172, 263, 272
AluI AGCT 4 cut(s) 116, 172, 263, 272
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 1 cut(s) 311
ApeKI GCWGC 3 cut(s) 169, 263, 272
AspS9I GGNCC 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 77
AvaII GGWCC 1 cut(s) 227
BbrPI CACGTG 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 89
BbvI GCAGC 3 cut(s) 181, 250, 259
BcoDI GTCTC 1 cut(s) 321
BisI GCNGC 3 cut(s) 170, 264, 273
BlsI GCNGC 3 cut(s) 171, 265, 274
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 228
BmsI GCATC 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 89
BpmI CTGGAG 1 cut(s) 69
BsaAI YACGTR 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 118
Bse1I ACTGG 2 cut(s) 52, 67
Bse3DI GCAATG 1 cut(s) 55
BseGI GGATG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 55
BseNI ACTGG 2 cut(s) 52, 67
BseXI GCAGC 3 cut(s) 181, 250, 259
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 321
BsmFI GGGAC 1 cut(s) 240
Bsp1407I TGTACA 1 cut(s) 35
Bsp143I GATC 1 cut(s) 303
BspACI CCGC 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 55
BsrGI TGTACA 1 cut(s) 35
BsrI ACTGG 2 cut(s) 52, 67
BssMI GATC 1 cut(s) 303
Bst4CI ACNGT 2 cut(s) 35, 231
BstAUI TGTACA 1 cut(s) 35
BstBAI YACGTR 1 cut(s) 164
BstF5I GGATG 1 cut(s) 201
BstKTI GATC 1 cut(s) 306
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 1 cut(s) 303
BstMWI GCNNNNNNNGC 3 cut(s) 260, 269, 272
BstNSI RCATGY 1 cut(s) 316
BstV1I GCAGC 3 cut(s) 181, 250, 259
BstV2I GAAGAC 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BtsCI GGATG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 36
CviAII CATG 2 cut(s) 313, 320
CviJI RGCY 4 cut(s) 116, 172, 263, 272
CviKI_1 RGCY 4 cut(s) 116, 172, 263, 272
CviQI GTAC 1 cut(s) 36
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 242
Eco72I CACGTG 1 cut(s) 164
FaeI CATG 2 cut(s) 316, 323
FaiI YATR 5 cut(s) 44, 177, 217, 314, 321
FaqI GGGAC 1 cut(s) 240
FatI CATG 2 cut(s) 312, 319
Fnu4HI GCNGC 3 cut(s) 170, 264, 273
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 3 cut(s) 170, 264, 273
GluI GCNGC 3 cut(s) 170, 264, 273
GsuI CTGGAG 1 cut(s) 69
HapII CCGG 1 cut(s) 119
Hin1II CATG 2 cut(s) 316, 323
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HpaII CCGG 1 cut(s) 119
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 2 cut(s) 145, 158
Hpy188III TCNNGA 2 cut(s) 101, 136
Hpy8I GTNNAC 1 cut(s) 21
HpyAV CCTTC 4 cut(s) 98, 163, 217, 328
HpyCH4III ACNGT 2 cut(s) 35, 231
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 269, 272
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 2 cut(s) 316, 323
Kzo9I GATC 1 cut(s) 303
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 7 cut(s) 33, 48, 114, 126, 132, 233, 273
Lsp1109I GCAGC 3 cut(s) 181, 250, 259
LweI GCATC 1 cut(s) 210
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 305
MboI GATC 1 cut(s) 303
MboII GAAGA 2 cut(s) 83, 89
MflI RGATCY 1 cut(s) 303
MluCI AATT 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 2 cut(s) 256, 293
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 1 cut(s) 119
MwoI GCNNNNNNNGC 3 cut(s) 260, 269, 272
NdeII GATC 1 cut(s) 303
NlaIII CATG 2 cut(s) 316, 323
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 1 cut(s) 316
PciI ACATGT 1 cut(s) 312
PkrI GCNGC 3 cut(s) 171, 265, 274
PmaCI CACGTG 1 cut(s) 164
PmlI CACGTG 1 cut(s) 164
Ppu21I YACGTR 1 cut(s) 164
PscI ACATGT 1 cut(s) 312
PspCI CACGTG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 227
PsuI RGATCY 1 cut(s) 303
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SatI GCNGC 3 cut(s) 170, 264, 273
Sau3AI GATC 1 cut(s) 303
Sau96I GGNCC 1 cut(s) 227
SetI ASST 8 cut(s) 90, 118, 166, 174, 222, 248, 265, 274
SfaNI GCATC 1 cut(s) 210
SinI GGWCC 1 cut(s) 227
Sse9I AATT 1 cut(s) 130
SsiI CCGC 1 cut(s) 24
TaaI ACNGT 2 cut(s) 35, 231
TaiI ACGT 1 cut(s) 166
TasI AATT 1 cut(s) 130
TatI WGTACW 1 cut(s) 35
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 3 cut(s) 169, 263, 272
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 67
TspRI CASTG 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 227
XceI RCATGY 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.