Rh5DG386000

Cytochrome c oxidase subunit VII

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011983
Physical Location & Seq
Reverse (-)
59605704 .. 59609717
4014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG386000.1

Sequence Viewer

Length: 204 bp
ATGTCAGAAGCCCCATTTAGACCACGTGAGCATCTGGTGGAGAAGCAGAAATATTTCCAAAATGTCCACAAATACACATATCTAAAGGGACCATTTGATAAGGTCACCTCTGTCGCCATTCCAGCTGCTTTGGCTGCTACTTCTTTGTTTCTTATTGGACGAGGTATCTACAACATGTCACATGGGATCGGGAAGAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COX7a

Protein Analysis

67

Amino Acids

7.58

Weight (kDa)

9.75

Isoelectric Point (pI)

32.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX7a PF02238 10 - 62 2.7e-15 Cytochrome c oxidase subunit VII
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 194
AcvI CACGTG 1 cut(s) 26
AflIII ACRYGT 1 cut(s) 174
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
AlwI GGATC 1 cut(s) 194
ApeKI GCWGC 2 cut(s) 125, 134
Asp700I GAANNNNTTC 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 97
AvaII GGWCC 1 cut(s) 89
BbrPI CACGTG 1 cut(s) 26
BbvI GCAGC 2 cut(s) 112, 121
BisI GCNGC 2 cut(s) 126, 135
BlsI GCNGC 2 cut(s) 127, 136
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 90
BmsI GCATC 1 cut(s) 40
BsaAI YACGTR 1 cut(s) 26
BseXI GCAGC 2 cut(s) 112, 121
BslFI GGGAC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 194
BssMI GATC 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 26
BstEII GGTNACC 1 cut(s) 103
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BstMWI GCNNNNNNNGC 3 cut(s) 122, 131, 134
BstNSI RCATGY 1 cut(s) 178
BstPI GGTNACC 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 112, 121
Cfr13I GGNCC 1 cut(s) 89
CviAII CATG 2 cut(s) 175, 182
CviJI RGCY 3 cut(s) 11, 125, 134
CviKI_1 RGCY 3 cut(s) 11, 125, 134
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 89
Eco72I CACGTG 1 cut(s) 26
Eco91I GGTNACC 1 cut(s) 103
EcoO65I GGTNACC 1 cut(s) 103
FaeI CATG 2 cut(s) 178, 185
FaiI YATR 3 cut(s) 79, 176, 183
FaqI GGGAC 1 cut(s) 102
FatI CATG 2 cut(s) 174, 181
Fnu4HI GCNGC 2 cut(s) 126, 135
Fsp4HI GCNGC 2 cut(s) 126, 135
GluI GCNGC 2 cut(s) 126, 135
Hin1II CATG 2 cut(s) 178, 185
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 131, 134
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 2 cut(s) 178, 185
Kzo9I GATC 1 cut(s) 186
LpnPI CCDG 2 cut(s) 20, 135
Lsp1109I GCAGC 2 cut(s) 112, 121
LweI GCATC 1 cut(s) 40
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 2 cut(s) 103, 177
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MnlI CCTC 2 cut(s) 118, 155
MroXI GAANNNNTTC 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 125
MwoI GCNNNNNNNGC 3 cut(s) 122, 131, 134
NdeII GATC 1 cut(s) 186
NlaIII CATG 2 cut(s) 178, 185
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 2 cut(s) 103, 177
NspI RCATGY 1 cut(s) 178
PciI ACATGT 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 53
PkrI GCNGC 2 cut(s) 127, 136
PmaCI CACGTG 1 cut(s) 26
PmlI CACGTG 1 cut(s) 26
Ppu21I YACGTR 1 cut(s) 26
PscI ACATGT 1 cut(s) 174
PspCI CACGTG 1 cut(s) 26
PspEI GGTNACC 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 125
SatI GCNGC 2 cut(s) 126, 135
Sau3AI GATC 1 cut(s) 186
Sau96I GGNCC 1 cut(s) 89
SetI ASST 5 cut(s) 28, 105, 110, 127, 166
SfaNI GCATC 1 cut(s) 40
SgeI CNNG 7 cut(s) 36, 38, 47, 134, 173, 187, 194
SinI GGWCC 1 cut(s) 89
SspI AATATT 1 cut(s) 53
TaiI ACGT 1 cut(s) 28
TseFI GTSAC 2 cut(s) 103, 177
TseI GCWGC 2 cut(s) 125, 134
Tsp45I GTSAC 2 cut(s) 103, 177
VpaK11BI GGWCC 1 cut(s) 89
XceI RCATGY 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.