Rh5BG372600

Cytochrome c oxidase subunit VII

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011983
Physical Location & Seq
Reverse (-)
58552543 .. 58555840
3298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG372600.1

Sequence Viewer

Length: 273 bp
ATGTTGAAGTCAAGGGGAGGGGAGGGCGGCGCTGAAAGCAGGGAGGCAAAACGGCGTCAAGGTCTCCCATTCGTGGTTGCTCGATTCCCGGCTACTCCCAATTTCACGATGTCAGAAGCCCCATTTAGACCACGTGAGCATCTGGTGGAGAAGCAGAAATATTTCCAAGGTGTCCACAAATACACATATCTAAAGGGACCATTTGATAAGGTCACCTCTGTCGCCATTCCAGCTGCTTTGGCTGCTACTTCTTTGTTTCTTATTGTAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COX7a

Protein Analysis

90

Amino Acids

9.98

Weight (kDa)

10.16

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX7a PF02238 46 - 88 2.9e-09 Cytochrome c oxidase subunit VII
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 27
AcvI CACGTG 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 1 cut(s) 7
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 68
ApeKI GCWGC 2 cut(s) 233, 242
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 205
AvaII GGWCC 1 cut(s) 197
BbrPI CACGTG 1 cut(s) 134
BbvI GCAGC 2 cut(s) 220, 229
BceAI ACGGC 1 cut(s) 68
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 68
BfoI RGCGCY 1 cut(s) 33
BisI GCNGC 3 cut(s) 28, 234, 243
BlsI GCNGC 3 cut(s) 29, 235, 244
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 148
BpuMI CCSGG 1 cut(s) 89
BsaAI YACGTR 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 73
BseXI GCAGC 2 cut(s) 220, 229
BsiSI CCGG 1 cut(s) 89
BslFI GGGAC 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 210
Bso31I GGTCTC 1 cut(s) 68
BspACI CCGC 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 166
BssNI GRCGYC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 166
BstACI GRCGYC 1 cut(s) 55
BstBAI YACGTR 1 cut(s) 134
BstEII GGTNACC 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstMAI GTCTC 1 cut(s) 68
BstMWI GCNNNNNNNGC 4 cut(s) 36, 230, 239, 242
BstPI GGTNACC 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 220, 229
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 197
CseI GACGC 1 cut(s) 44
CviJI RGCY 4 cut(s) 92, 119, 233, 242
CviKI_1 RGCY 4 cut(s) 92, 119, 233, 242
Eco130I CCWWGG 1 cut(s) 166
Eco31I GGTCTC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 197
Eco72I CACGTG 1 cut(s) 134
Eco91I GGTNACC 1 cut(s) 211
EcoO65I GGTNACC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FaiI YATR 1 cut(s) 187
FaqI GGGAC 1 cut(s) 210
Fnu4HI GCNGC 3 cut(s) 28, 234, 243
Fsp4HI GCNGC 3 cut(s) 28, 234, 243
GlaI GCGC 1 cut(s) 31
GluI GCNGC 3 cut(s) 28, 234, 243
HaeII RGCGCY 1 cut(s) 33
HapII CCGG 1 cut(s) 89
HgaI GACGC 1 cut(s) 44
HhaI GCGC 1 cut(s) 32
Hin1I GRCGYC 1 cut(s) 55
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 1 cut(s) 84
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 133
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 230, 239, 242
HpySE526I ACGT 1 cut(s) 133
Hsp92I GRCGYC 1 cut(s) 55
HspAI GCGC 1 cut(s) 30
LpnPI CCDG 4 cut(s) 25, 102, 128, 243
Lsp1109I GCAGC 2 cut(s) 220, 229
LweI GCATC 1 cut(s) 148
MaeII ACGT 1 cut(s) 133
MaeIII GTNAC 1 cut(s) 211
MluCI AATT 1 cut(s) 100
MnlI CCTC 4 cut(s) 11, 16, 37, 226
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 1 cut(s) 271
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 89
MwoI GCNNNNNNNGC 4 cut(s) 36, 230, 239, 242
NciI CCSGG 1 cut(s) 89
NlaIV GGNNCC 1 cut(s) 198
NmuCI GTSAC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 84
PkrI GCNGC 3 cut(s) 29, 235, 244
PmaCI CACGTG 1 cut(s) 134
PmlI CACGTG 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 134
PspCI CACGTG 1 cut(s) 134
PspEI GGTNACC 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 233
SaqAI TTAA 1 cut(s) 271
SatI GCNGC 3 cut(s) 28, 234, 243
Sau96I GGNCC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 89
SetI ASST 6 cut(s) 64, 136, 172, 213, 218, 235
SfaNI GCATC 1 cut(s) 148
SinI GGWCC 1 cut(s) 197
Sse9I AATT 1 cut(s) 100
SsiI CCGC 1 cut(s) 27
SspI AATATT 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 166
TaiI ACGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 82
TasI AATT 1 cut(s) 100
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 1 cut(s) 271
Tru9I TTAA 1 cut(s) 271
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 2 cut(s) 233, 242
Tsp45I GTSAC 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 197
XmnI GAANNNNTTC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.