pycom11g12990

Cytochrome c oxidase subunit VII

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011983
Physical Location & Seq
Reverse (-)
12066607 .. 12066931
325 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g12990.1

Sequence Viewer

Length: 204 bp
ATGTCAGAAACACCCTTCCGACCACGTGAGCAGCTGTATGAGAAACAAAAGATTTTCCAAAGCATCCACAAACATACATACCTGAAGGGACCGTTTGATAAGATTACCTCTGTTGCCATTCCAGCTGCTTTAGCTGCTACTTCGTTGTTCCTTATTGGACGAGGGATCTACAACATGTCTCATGGGATTGGAAAGAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COX7a

Protein Analysis

68

Amino Acids

7.59

Weight (kDa)

9.82

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX7a PF02238 12 - 62 7.8e-15 Cytochrome c oxidase subunit VII
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 104
AcvI CACGTG 1 cut(s) 26
AflIII ACRYGT 1 cut(s) 174
AluBI AGCT 3 cut(s) 34, 125, 134
AluI AGCT 3 cut(s) 34, 125, 134
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 1 cut(s) 173
ApeKI GCWGC 3 cut(s) 31, 125, 134
AspS9I GGNCC 1 cut(s) 89
AvaII GGWCC 1 cut(s) 89
BbrPI CACGTG 1 cut(s) 26
BbvI GCAGC 3 cut(s) 43, 112, 121
BcoDI GTCTC 1 cut(s) 183
BisI GCNGC 3 cut(s) 32, 126, 135
BlsI GCNGC 3 cut(s) 33, 127, 136
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 90
BmsI GCATC 1 cut(s) 72
BsaAI YACGTR 1 cut(s) 26
BseGI GGATG 1 cut(s) 63
BseXI GCAGC 3 cut(s) 43, 112, 121
BslFI GGGAC 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 173
BssMI GATC 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 93
BstBAI YACGTR 1 cut(s) 26
BstF5I GGATG 1 cut(s) 63
BstKTI GATC 1 cut(s) 168
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 1 cut(s) 165
BstMWI GCNNNNNNNGC 3 cut(s) 122, 131, 134
BstNSI RCATGY 1 cut(s) 178
BstV1I GCAGC 3 cut(s) 43, 112, 121
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BtsCI GGATG 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 89
CviAII CATG 2 cut(s) 175, 182
CviJI RGCY 3 cut(s) 34, 125, 134
CviKI_1 RGCY 3 cut(s) 34, 125, 134
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 104
Eco72I CACGTG 1 cut(s) 26
FaeI CATG 2 cut(s) 178, 185
FaiI YATR 5 cut(s) 39, 75, 79, 176, 183
FaqI GGGAC 1 cut(s) 102
FatI CATG 2 cut(s) 174, 181
Fnu4HI GCNGC 3 cut(s) 32, 126, 135
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 3 cut(s) 32, 126, 135
GluI GCNGC 3 cut(s) 32, 126, 135
Hin1II CATG 2 cut(s) 178, 185
Hpy188I TCNGA 2 cut(s) 7, 20
HpyAV CCTTC 3 cut(s) 25, 79, 190
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4IV ACGT 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 131, 134
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 2 cut(s) 178, 185
Kzo9I GATC 1 cut(s) 165
LpnPI CCDG 2 cut(s) 95, 135
Lsp1109I GCAGC 3 cut(s) 43, 112, 121
LweI GCATC 1 cut(s) 72
MaeII ACGT 1 cut(s) 25
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MflI RGATCY 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 2 cut(s) 118, 155
MspA1I CMGCKG 2 cut(s) 34, 125
MwoI GCNNNNNNNGC 3 cut(s) 122, 131, 134
NdeII GATC 1 cut(s) 165
NlaIII CATG 2 cut(s) 178, 185
NlaIV GGNNCC 1 cut(s) 90
NspI RCATGY 1 cut(s) 178
PciI ACATGT 1 cut(s) 174
PkrI GCNGC 3 cut(s) 33, 127, 136
PmaCI CACGTG 1 cut(s) 26
PmlI CACGTG 1 cut(s) 26
Ppu21I YACGTR 1 cut(s) 26
PscI ACATGT 1 cut(s) 174
PspCI CACGTG 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 89
PsuI RGATCY 1 cut(s) 165
PvuII CAGCTG 2 cut(s) 34, 125
SatI GCNGC 3 cut(s) 32, 126, 135
Sau3AI GATC 1 cut(s) 165
Sau96I GGNCC 1 cut(s) 89
SetI ASST 6 cut(s) 28, 36, 84, 110, 127, 136
SfaNI GCATC 1 cut(s) 72
SgeI CNNG 7 cut(s) 36, 38, 94, 134, 173, 187, 194
SinI GGWCC 1 cut(s) 89
TaaI ACNGT 1 cut(s) 93
TaiI ACGT 1 cut(s) 28
TseI GCWGC 3 cut(s) 31, 125, 134
VpaK11BI GGWCC 1 cut(s) 89
XceI RCATGY 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.