Rmu_sc0010632.1_g000011

Cytochrome c oxidase subunit VII

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010632.1
OG0011983
Physical Location & Seq
Reverse (-)
40542 .. 42983
2442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010632.1_g000011.1.cds

Sequence Viewer

Length: 294 bp
ctgcttttcactttcatatcctccagtccgcagcggcgtcaaggtctcccattcgtggttgctcgattcccggctactcccaatttcacgatgtcagaagccccatttagaccacgtgagcatctggtggagaagcagaaatatttccaaaatgtccacaaatacacatttctaaagggaccatttgataaggtcacctctgtcgccattccagctgctttggcagctacttctttgtttcttattggacgaggtatctacaacatgtcacatgggatcgggaagaaggaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COX7a

Protein Analysis

97

Amino Acids

10.94

Weight (kDa)

10.34

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 29, 34
AclWI GGATC 1 cut(s) 284
AcvI CACGTG 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 55
AflIII ACRYGT 1 cut(s) 264
AluBI AGCT 2 cut(s) 215, 227
AluI AGCT 2 cut(s) 215, 227
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 1 cut(s) 284
ApeKI GCWGC 3 cut(s) 31, 215, 224
Asp700I GAANNNNTTC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 179
BbrPI CACGTG 1 cut(s) 116
BbvI GCAGC 3 cut(s) 43, 202, 236
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 50
BisI GCNGC 4 cut(s) 32, 35, 216, 225
BlsI GCNGC 4 cut(s) 33, 36, 217, 226
Bme1390I CCNGG 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 71
BmsI GCATC 1 cut(s) 130
BpmI CTGGAG 1 cut(s) 7
BpuMI CCSGG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 116
BsaHI GRCGYC 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 50
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 55
BseNI ACTGG 1 cut(s) 24
BseXI GCAGC 3 cut(s) 43, 202, 236
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 192
Bso31I GGTCTC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 276
BspACI CCGC 2 cut(s) 29, 34
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 50
BsrI ACTGG 1 cut(s) 24
BssMI GATC 1 cut(s) 276
BssNI GRCGYC 1 cut(s) 37
BstACI GRCGYC 1 cut(s) 37
BstBAI YACGTR 1 cut(s) 116
BstEII GGTNACC 1 cut(s) 193
BstKTI GATC 1 cut(s) 279
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 276
BstMWI GCNNNNNNNGC 3 cut(s) 212, 221, 224
BstNSI RCATGY 1 cut(s) 268
BstPI GGTNACC 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 69
BstV1I GCAGC 3 cut(s) 43, 202, 236
Cfr13I GGNCC 1 cut(s) 179
CseI GACGC 1 cut(s) 26
CviAII CATG 2 cut(s) 265, 272
CviJI RGCY 4 cut(s) 74, 101, 215, 227
CviKI_1 RGCY 4 cut(s) 74, 101, 215, 227
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
Eco31I GGTCTC 1 cut(s) 50
Eco47I GGWCC 1 cut(s) 179
Eco72I CACGTG 1 cut(s) 116
Eco91I GGTNACC 1 cut(s) 193
EcoO65I GGTNACC 1 cut(s) 193
FaeI CATG 2 cut(s) 268, 275
FaiI YATR 3 cut(s) 17, 266, 273
FaqI GGGAC 1 cut(s) 192
FatI CATG 2 cut(s) 264, 271
Fnu4HI GCNGC 4 cut(s) 32, 35, 216, 225
Fsp4HI GCNGC 4 cut(s) 32, 35, 216, 225
GluI GCNGC 4 cut(s) 32, 35, 216, 225
GsuI CTGGAG 1 cut(s) 7
HapII CCGG 1 cut(s) 71
HgaI GACGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 37
Hin1II CATG 2 cut(s) 268, 275
HinfI GANTC 1 cut(s) 66
HpaII CCGG 1 cut(s) 71
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 2 cut(s) 88, 280
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 221, 224
HpySE526I ACGT 1 cut(s) 115
Hsp92I GRCGYC 1 cut(s) 37
Hsp92II CATG 2 cut(s) 268, 275
Kzo9I GATC 1 cut(s) 276
LpnPI CCDG 4 cut(s) 37, 84, 110, 225
Lsp1109I GCAGC 3 cut(s) 43, 202, 236
LweI GCATC 1 cut(s) 130
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 2 cut(s) 193, 267
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MluCI AATT 1 cut(s) 82
MnlI CCTC 3 cut(s) 31, 208, 245
MroXI GAANNNNTTC 1 cut(s) 143
MspA1I CMGCKG 2 cut(s) 34, 215
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 71
MwoI GCNNNNNNNGC 3 cut(s) 212, 221, 224
NciI CCSGG 1 cut(s) 71
NdeII GATC 1 cut(s) 276
NlaIII CATG 2 cut(s) 268, 275
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 2 cut(s) 193, 267
NspI RCATGY 1 cut(s) 268
PciI ACATGT 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 1 cut(s) 66
PkrI GCNGC 4 cut(s) 33, 36, 217, 226
PmaCI CACGTG 1 cut(s) 116
PmlI CACGTG 1 cut(s) 116
Ppu21I YACGTR 1 cut(s) 116
PscI ACATGT 1 cut(s) 264
PspCI CACGTG 1 cut(s) 116
PspEI GGTNACC 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 215
SatI GCNGC 4 cut(s) 32, 35, 216, 225
Sau3AI GATC 1 cut(s) 276
Sau96I GGNCC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 71
SetI ASST 7 cut(s) 46, 118, 195, 200, 217, 229, 256
SfaNI GCATC 1 cut(s) 130
SinI GGWCC 1 cut(s) 179
Sse9I AATT 1 cut(s) 82
SsiI CCGC 2 cut(s) 29, 34
SspI AATATT 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 69
TaiI ACGT 1 cut(s) 118
TaqI TCGA 1 cut(s) 64
TasI AATT 1 cut(s) 82
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 1 cut(s) 66
TseFI GTSAC 2 cut(s) 193, 267
TseI GCWGC 3 cut(s) 31, 215, 224
Tsp45I GTSAC 2 cut(s) 193, 267
TspDTI ATGAA 1 cut(s) 4
VpaK11BI GGWCC 1 cut(s) 179
XceI RCATGY 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.