MD03G1165300.v1.1

Cytochrome c oxidase subunit VII

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0011983
Physical Location & Seq
Forward (+)
21876569 .. 21879031
2463 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1165300.v1.1.491

Sequence Viewer

Length: 204 bp
ATGTCAGAAACACCCTTCCGACCACGTGAGCAGCTCTATGAGAAGCAAAAGATTTTCCAAAGCATCCACAAACACACATACCTGAAGGGACCATATGATAAGATTACGTCTGTTGCCATTCCAGCTGCTTTAGCTGCTACTTCATTGTTCCTTATTGGACGAGGGATCTACAACATGTCACATGGGATTGGAAAGAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COX7a

Protein Analysis

68

Amino Acids

7.61

Weight (kDa)

9.75

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX7a PF02238 12 - 62 1.7e-15 Cytochrome c oxidase subunit VII
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 104
AcvI CACGTG 1 cut(s) 26
AflIII ACRYGT 1 cut(s) 174
AluBI AGCT 3 cut(s) 34, 125, 134
AluI AGCT 3 cut(s) 34, 125, 134
AlwI GGATC 1 cut(s) 173
ApeKI GCWGC 3 cut(s) 31, 125, 134
AspS9I GGNCC 1 cut(s) 89
AvaII GGWCC 1 cut(s) 89
BbrPI CACGTG 1 cut(s) 26
BbvI GCAGC 3 cut(s) 43, 112, 121
BisI GCNGC 3 cut(s) 32, 126, 135
BlsI GCNGC 3 cut(s) 33, 127, 136
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 90
BmsI GCATC 1 cut(s) 72
BsaAI YACGTR 1 cut(s) 26
BseGI GGATG 1 cut(s) 63
BseXI GCAGC 3 cut(s) 43, 112, 121
BslFI GGGAC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 173
BssMI GATC 1 cut(s) 165
BstBAI YACGTR 1 cut(s) 26
BstF5I GGATG 1 cut(s) 63
BstKTI GATC 1 cut(s) 168
BstMBI GATC 1 cut(s) 165
BstMWI GCNNNNNNNGC 3 cut(s) 122, 131, 134
BstNSI RCATGY 1 cut(s) 178
BstV1I GCAGC 3 cut(s) 43, 112, 121
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BtsCI GGATG 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 89
CviAII CATG 2 cut(s) 175, 182
CviJI RGCY 3 cut(s) 34, 125, 134
CviKI_1 RGCY 3 cut(s) 34, 125, 134
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 104
Eco72I CACGTG 1 cut(s) 26
FaeI CATG 2 cut(s) 178, 185
FaiI YATR 6 cut(s) 39, 79, 94, 96, 176, 183
FaqI GGGAC 1 cut(s) 102
FatI CATG 2 cut(s) 174, 181
FauNDI CATATG 1 cut(s) 94
Fnu4HI GCNGC 3 cut(s) 32, 126, 135
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 3 cut(s) 32, 126, 135
GluI GCNGC 3 cut(s) 32, 126, 135
Hin1II CATG 2 cut(s) 178, 185
Hpy188I TCNGA 2 cut(s) 7, 20
HpyAV CCTTC 3 cut(s) 25, 79, 190
HpyCH4IV ACGT 2 cut(s) 25, 107
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 131, 134
HpySE526I ACGT 2 cut(s) 25, 107
Hsp92II CATG 2 cut(s) 178, 185
Kzo9I GATC 1 cut(s) 165
LpnPI CCDG 2 cut(s) 95, 135
Lsp1109I GCAGC 3 cut(s) 43, 112, 121
LweI GCATC 1 cut(s) 72
MaeII ACGT 2 cut(s) 25, 107
MaeIII GTNAC 1 cut(s) 177
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MflI RGATCY 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 125
MwoI GCNNNNNNNGC 3 cut(s) 122, 131, 134
NdeI CATATG 1 cut(s) 94
NdeII GATC 1 cut(s) 165
NlaIII CATG 2 cut(s) 178, 185
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 177
NspI RCATGY 1 cut(s) 178
PciI ACATGT 1 cut(s) 174
PkrI GCNGC 3 cut(s) 33, 127, 136
PmaCI CACGTG 1 cut(s) 26
PmlI CACGTG 1 cut(s) 26
Ppu21I YACGTR 1 cut(s) 26
PscI ACATGT 1 cut(s) 174
PspCI CACGTG 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 89
PsuI RGATCY 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 125
SatI GCNGC 3 cut(s) 32, 126, 135
Sau3AI GATC 1 cut(s) 165
Sau96I GGNCC 1 cut(s) 89
SetI ASST 6 cut(s) 28, 36, 84, 110, 127, 136
SfaNI GCATC 1 cut(s) 72
SgeI CNNG 7 cut(s) 36, 38, 94, 134, 173, 187, 194
SinI GGWCC 1 cut(s) 89
TaiI ACGT 2 cut(s) 28, 110
TseFI GTSAC 1 cut(s) 177
TseI GCWGC 3 cut(s) 31, 125, 134
Tsp45I GTSAC 1 cut(s) 177
TspDTI ATGAA 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 89
XceI RCATGY 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.