pycom03g09300

Cytochrome c oxidase subunit VII

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0011983
Physical Location & Seq
Reverse (-)
7800405 .. 7800892
488 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g09300.1

Sequence Viewer

Length: 282 bp
ATGGTGCTTATTCACGGGATATTTGGGTGGTGCATTTTTGTTGGAACCTCTACCTATAGAACAATGAGGATGTCAGAACCACCCTTCCGACCACGCGAGAAGCTCTATGAGAAGCAAAAGATGTTCCAAAGCATCCACAAGCACACATACCTGAAGGGACCGTATGATAAGATTACCTCTGTTGCCATTCCAGCTGCTTTAGCTGCTACTTCATTGTTCCTTATTGCACGAGGGATCTACAACTTGTCGCATGGGATTGGAAAGAAGGAAGATGCAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COX7a

Protein Analysis

94

Amino Acids

10.55

Weight (kDa)

9.81

Isoelectric Point (pI)

30.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX7a PF02238 33 - 85 2.4e-15 Cytochrome c oxidase subunit VII
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 96
AclWI GGATC 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 173
AloI GAACNNNNNNTCC 2 cut(s) 69, 101
AluBI AGCT 3 cut(s) 103, 194, 203
AluI AGCT 3 cut(s) 103, 194, 203
AlwI GGATC 1 cut(s) 242
ApeKI GCWGC 3 cut(s) 194, 203, 275
AspS9I GGNCC 1 cut(s) 158
AvaII GGWCC 1 cut(s) 158
BauI CACGAG 1 cut(s) 228
BbvI GCAGC 2 cut(s) 181, 190
BfmI CTRYAG 1 cut(s) 55
BisI GCNGC 3 cut(s) 195, 204, 276
BlsI GCNGC 3 cut(s) 196, 205, 277
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 2 cut(s) 46, 159
BmsI GCATC 2 cut(s) 141, 262
BseGI GGATG 2 cut(s) 75, 132
BseXI GCAGC 2 cut(s) 181, 190
Bsh1236I CGCG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 171
Bsp143I GATC 1 cut(s) 234
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 46, 159
BspPI GGATC 1 cut(s) 242
BssMI GATC 1 cut(s) 234
BssSI CACGAG 1 cut(s) 228
Bst2BI CACGAG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 162
BstF5I GGATG 2 cut(s) 75, 132
BstFNI CGCG 1 cut(s) 96
BstKTI GATC 1 cut(s) 237
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 3 cut(s) 191, 200, 203
BstSFI CTRYAG 1 cut(s) 55
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 181, 190
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BtsCI GGATG 2 cut(s) 75, 132
Cfr13I GGNCC 1 cut(s) 158
CviAII CATG 1 cut(s) 251
CviJI RGCY 3 cut(s) 103, 194, 203
CviKI_1 RGCY 3 cut(s) 103, 194, 203
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 173
FaeI CATG 1 cut(s) 254
FaiI YATR 6 cut(s) 57, 108, 148, 165, 252, 280
FaqI GGGAC 1 cut(s) 171
FatI CATG 1 cut(s) 250
Fnu4HI GCNGC 3 cut(s) 195, 204, 276
FokI GGATG 2 cut(s) 82, 119
Fsp4HI GCNGC 3 cut(s) 195, 204, 276
GluI GCNGC 3 cut(s) 195, 204, 276
Hin1II CATG 1 cut(s) 254
Hpy188I TCNGA 2 cut(s) 76, 89
HpyAV CCTTC 3 cut(s) 94, 148, 259
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 33, 227, 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 200, 203
Hsp92II CATG 1 cut(s) 254
Kzo9I GATC 1 cut(s) 234
LpnPI CCDG 2 cut(s) 164, 204
Lsp1109I GCAGC 2 cut(s) 181, 190
LweI GCATC 2 cut(s) 141, 262
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 1 cut(s) 281
MflI RGATCY 1 cut(s) 234
MmeI TCCRAC 2 cut(s) 22, 112
MnlI CCTC 4 cut(s) 58, 60, 187, 224
MspA1I CMGCKG 1 cut(s) 194
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 3 cut(s) 191, 200, 203
NdeII GATC 1 cut(s) 234
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 2 cut(s) 46, 159
PkrI GCNGC 3 cut(s) 196, 205, 277
PspN4I GGNNCC 2 cut(s) 46, 159
PspPI GGNCC 1 cut(s) 158
PsuI RGATCY 1 cut(s) 234
PvuII CAGCTG 1 cut(s) 194
SatI GCNGC 3 cut(s) 195, 204, 276
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 1 cut(s) 158
SetI ASST 7 cut(s) 50, 56, 105, 153, 179, 196, 205
SfaNI GCATC 2 cut(s) 141, 262
SfcI CTRYAG 1 cut(s) 55
SinI GGWCC 1 cut(s) 158
TaaI ACNGT 1 cut(s) 162
TseI GCWGC 3 cut(s) 194, 203, 275
TspDTI ATGAA 1 cut(s) 201
VpaK11BI GGWCC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.