FvH4_3g30680

Protein UPSTREAM OF FLC isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006878
Physical Location & Seq
Reverse (-)
24040278 .. 24045321
5044 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30680.t3

Sequence Viewer

Length: 1584 bp
ATGGAGGGTAGGATGAAAAAGTATAGACAAGTGAGTCCTGAGAGGGCTAAAGTGTGGACTGAAAAGTCGCCGAGATATCACCAGAATCGGAAAGTTCCGGTGGTTTATTACCTCTGCCGGAATCGACAGCTTGAGCACCCTCATTTCATGGAGGTTCCTGTGAGCTCTTCTCAGGGTCTCTACCTCAGAGATGTTATTAATAAGCTTAATGCTCTGAGGGGTAAAGGGATTGCATCCATGTATTCATGGTCTTCTAAGAGAAGCTATAAGAATGGTTATGTTTGGCATGATCTCAGTGAAGATGATGTGATTCTTCCGGCCCATGGAGACGAGTACGTCCTCAAGGGCTCTGAGATCTTTGATGAATCCAATTCAGGTCGATTTAGTCCAATAGCAAATGTCCAAATCCAGACCTTGAAACAATTACCAGAACCAACATCTTCTAGAAGCCGTGATGATTCTTCATCGTCTTCGAGTTTGAACGACAAGGAGACAAAGCATTCACAAGAAGACGAGCTCTCTCCTCCAGTTGAACGACCCGGAGGCTCTTCCAGTGTGTCTCCAGAGTCTGGAAAGAATTCTTCTTGGGGTGGTTCTCTGAGCTTGACAGAGTACAAGGTTTATAAGAGTGATGGTTTAGCTGATGCTTCTACACAGACTGAAGAAAATGTGAACAAACCTAAAGCTCTAGAAACATGTACAAGGGGTGTTTCCACAGATGAAGGGTCGCTAGAGCCTGATTACACGGATTACCAAGACCGAATTCCATGTTTGAAAGAGAATTTGGAAATTTGCAGTGATTCTAATTCCCCTCCAGCATCTTCCTCAAGTGCATCTTCATCGGGTGGGAAGACTGAAACTTTAGAATCACTAATTAGGGCTGATGTTAGTAAAATTAACAGTTTCAGAATTCTTGAAGAGGAAGAGCTTCGAATGCCAAACCATGCAAGGCTCAAGGCTGGTAATATACTTATGCAACTCATTTCATGTGGGTCAATATCAGTGAAGGATCATAGTTTTGGTCTTATTCCAACCTACAAGCCCAGGTTTTCCCATTCTAAGTTCCCCTCGCCATTATTTTCTAGTTCAATAATGCTGGGTGAGCTAGACAGCTTATCAGAGAATCCAAGGCTGAAGGGTTTGAGATCTGAAGATAAAGAATATTTCAGTGGGAGCTTAATTGAGAGTAAAGTGCTCAAGGAGGAAGATGGACATATAGCTCTAAAACGATCTTCTTCATACAATGCCGACAGGAGTTGTAATAAGAAGCCAGATTCAATTGAGGAGAAAGAGGAGTCTACCTCAGGACGATCAAAATGCATCCTAAGATCAATCAAGGCTTCACTAAACAAGCAACCACGGAGTGAAACTATGAGATCTCCTATTTCTGATAAACCAAGGAACTCCTCAGATGGAGTTGATGGTGTACAAATCAGTACCCCTACTGTATCCAATGGAGGTAGTAAAAGAATCACAGATCCATCCTCTGTTAAAAAGCAATCGAAAAGGGTAGATGCTTTCAGAGGAGAGAAGGAGAAGGTTATCAAAATCGAAGAAAGCTTGCTTCAGGAGCTCGGGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF966

Protein Analysis

528

Amino Acids

58.58

Weight (kDa)

7.99

Isoelectric Point (pI)

66.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOK PF06136 32 - 120 4.4e-50 SOSEKI protein DIX-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 624
AasI GACNNNNNNGTC 3 cut(s) 33, 64, 335
AccB7I CCANNNNNTGG 1 cut(s) 569
AccI GTMKAC 1 cut(s) 1298
AclWI GGATC 2 cut(s) 1017, 1472
AcsI RAATTY 5 cut(s) 577, 762, 781, 789, 909
AcuI CTGAAG 4 cut(s) 681, 1154, 1170, 1550
AdeI CACNNNGTG 1 cut(s) 1364
AfaI GTAC 5 cut(s) 335, 614, 700, 1428, 1438
AfiI CCNNNNNNNGG 2 cut(s) 323, 569
AflIII ACRYGT 1 cut(s) 695
AgsI TTSAA 7 cut(s) 418, 481, 533, 775, 917, 1089, 1278
AjnI CCWGG 1 cut(s) 1043
AjuI GAANNNNNNNTTGG 4 cut(s) 747, 767, 779, 799
Alw21I GWGCWC 5 cut(s) 138, 167, 519, 1197, 1575
Alw26I GTCTC 4 cut(s) 182, 321, 485, 564
AlwI GGATC 2 cut(s) 1017, 1472
AlwNI CAGNNNCTG 1 cut(s) 569
Ama87I CYCGRG 1 cut(s) 1574
AoxI GGCC 1 cut(s) 318
ApoI RAATTY 5 cut(s) 577, 762, 781, 789, 909
AseI ATTAAT 1 cut(s) 198
Asp700I GAANNNNTTC 2 cut(s) 577, 927
AspS9I GGNCC 1 cut(s) 319
AsuC2I CCSGG 1 cut(s) 540
AsuHPI GGTGA 2 cut(s) 71, 1112
AsuII TTCGAA 1 cut(s) 931
AvaI CYCGRG 1 cut(s) 1574
AxyI CCTNAGG 1 cut(s) 1303
BanII GRGCYC 4 cut(s) 167, 350, 519, 1575
BbsI GAAGAC 4 cut(s) 243, 462, 516, 857
Bbv12I GWGCWC 5 cut(s) 138, 167, 519, 1197, 1575
BccI CCATC 5 cut(s) 626, 1202, 1406, 1415, 1489
BceAI ACGGC 1 cut(s) 435
BcgI CGANNNNNNTGC 4 cut(s) 822, 856, 1299, 1333
BciT130I CCWGG 1 cut(s) 1045
BciVI GTATCC 1 cut(s) 1459
BcnI CCSGG 1 cut(s) 540
BcoDI GTCTC 4 cut(s) 182, 321, 485, 564
BfaI CTAG 5 cut(s) 444, 689, 731, 1083, 1106
BfuI GTATCC 1 cut(s) 1459
BglII AGATCT 3 cut(s) 354, 1145, 1376
Bme1390I CCNGG 2 cut(s) 540, 1045
BmeT110I CYCGRG 1 cut(s) 1574
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 2 cut(s) 540, 1045
BmsI GCATC 6 cut(s) 242, 634, 827, 842, 1329, 1504
BpiI GAAGAC 4 cut(s) 243, 462, 516, 857
BplI GAGNNNNNCTC 4 cut(s) 154, 186, 1286, 1318
BpmI CTGGAG 3 cut(s) 510, 546, 798
Bpu14I TTCGAA 1 cut(s) 931
BpuEI CTTGAG 5 cut(s) 152, 326, 811, 938, 1181
BpuMI CCSGG 1 cut(s) 540
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 5 cut(s) 322, 1043, 1127, 1358, 1397
BsaWI WCCGGW 1 cut(s) 97
BsaXI ACNNNNNCTCC 1 cut(s) 1562
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 569
Bse1I ACTGG 2 cut(s) 527, 552
Bse21I CCTNAGG 1 cut(s) 1303
BseBI CCWGG 1 cut(s) 1045
BseDI CCNNGG 5 cut(s) 322, 1043, 1127, 1358, 1397
BseGI GGATG 4 cut(s) 18, 233, 1320, 1481
BseLI CCNNNNNNNGG 2 cut(s) 323, 569
BseMII CTCAG 9 cut(s) 30, 185, 199, 206, 307, 342, 590, 1317, 1422
BseNI ACTGG 2 cut(s) 527, 552
BseRI GAGGAG 5 cut(s) 513, 1298, 1307, 1396, 1539
BseYI CCCAGC 1 cut(s) 1096
BshFI GGCC 1 cut(s) 320
BsiHKAI GWGCWC 5 cut(s) 138, 167, 519, 1197, 1575
BsiHKCI CYCGRG 1 cut(s) 1574
BsiSI CCGG 4 cut(s) 98, 118, 317, 540
BslI CCNNNNNNNGG 2 cut(s) 323, 569
BsmAI GTCTC 4 cut(s) 182, 321, 485, 564
BsmBI CGTCTC 1 cut(s) 321
BsmI GAATGC 2 cut(s) 499, 939
BsnI GGCC 1 cut(s) 320
Bso31I GGTCTC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 1574
Bsp119I TTCGAA 1 cut(s) 931
Bsp1286I GDGCHC 6 cut(s) 138, 167, 350, 519, 1197, 1575
Bsp1407I TGTACA 2 cut(s) 698, 1426
Bsp143I GATC 9 cut(s) 289, 354, 1009, 1145, 1229, 1310, 1328, 1376, 1477
Bsp19I CCATGG 1 cut(s) 322
BspANI GGCC 1 cut(s) 320
BspCNI CTCAG 9 cut(s) 31, 184, 198, 207, 306, 343, 591, 1316, 1421
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 2 cut(s) 1017, 1472
BspQI GCTCTTC 3 cut(s) 172, 553, 918
BspT104I TTCGAA 1 cut(s) 931
BspTNI GGTCTC 1 cut(s) 182
BsrGI TGTACA 2 cut(s) 698, 1426
BsrI ACTGG 2 cut(s) 527, 552
BssECI CCNNGG 5 cut(s) 322, 1043, 1127, 1358, 1397
BssMI GATC 9 cut(s) 289, 354, 1009, 1145, 1229, 1310, 1328, 1376, 1477
BssT1I CCWWGG 3 cut(s) 322, 1127, 1397
Bst2UI CCWGG 1 cut(s) 1045
Bst4CI ACNGT 2 cut(s) 902, 1447
Bst6I CTCTTC 4 cut(s) 172, 553, 912, 918
BstAUI TGTACA 2 cut(s) 698, 1426
BstBI TTCGAA 1 cut(s) 931
BstC8I GCNNGC 1 cut(s) 1562
BstDSI CCRYGG 2 cut(s) 322, 1358
BstF5I GGATG 4 cut(s) 18, 233, 1320, 1481
BstKTI GATC 9 cut(s) 292, 357, 1012, 1148, 1232, 1313, 1331, 1379, 1480
BstMAI GTCTC 4 cut(s) 182, 321, 485, 564
BstMBI GATC 9 cut(s) 289, 354, 1009, 1145, 1229, 1310, 1328, 1376, 1477
BstMWI GCNNNNNNNGC 3 cut(s) 934, 1102, 1570
BstNI CCWGG 1 cut(s) 1045
BstNSI RCATGY 1 cut(s) 699
BstSCI CCNGG 2 cut(s) 538, 1043
BstV2I GAAGAC 4 cut(s) 243, 462, 516, 857
BstX2I RGATCY 4 cut(s) 354, 1145, 1376, 1477
BstYI RGATCY 4 cut(s) 354, 1145, 1376, 1477
Bsu36I CCTNAGG 1 cut(s) 1303
BsuI GTATCC 1 cut(s) 1459
BsuRI GGCC 1 cut(s) 320
BtgI CCRYGG 2 cut(s) 322, 1358
BtsCI GGATG 4 cut(s) 18, 233, 1320, 1481
BtsI GCAGTG 1 cut(s) 802
BtsIMutI CAGTG 5 cut(s) 301, 559, 802, 1008, 1174
Cac8I GCNNGC 1 cut(s) 1562
CaiI CAGNNNCTG 1 cut(s) 569
Cfr13I GGNCC 1 cut(s) 319
Csp6I GTAC 5 cut(s) 334, 613, 699, 1427, 1437
CviAII CATG 9 cut(s) 148, 238, 246, 287, 323, 696, 768, 944, 987
CviQI GTAC 5 cut(s) 334, 613, 699, 1427, 1437
DpnI GATC 9 cut(s) 291, 356, 1011, 1147, 1231, 1312, 1330, 1378, 1479
DpnII GATC 9 cut(s) 289, 354, 1009, 1145, 1229, 1310, 1328, 1376, 1477
DraIII CACNNNGTG 1 cut(s) 1364
DrdI GACNNNNNNGTC 3 cut(s) 33, 64, 335
DseDI GACNNNNNNGTC 3 cut(s) 33, 64, 335
Eam1104I CTCTTC 4 cut(s) 172, 553, 912, 918
EarI CTCTTC 4 cut(s) 172, 553, 912, 918
Ecl136II GAGCTC 3 cut(s) 165, 517, 1573
Eco130I CCWWGG 3 cut(s) 322, 1127, 1397
Eco24I GRGCYC 4 cut(s) 167, 350, 519, 1575
Eco31I GGTCTC 1 cut(s) 182
Eco32I GATATC 1 cut(s) 77
Eco53kI GAGCTC 3 cut(s) 165, 517, 1573
Eco57I CTGAAG 4 cut(s) 681, 1154, 1170, 1550
Eco81I CCTNAGG 1 cut(s) 1303
Eco88I CYCGRG 1 cut(s) 1574
EcoICRI GAGCTC 3 cut(s) 165, 517, 1573
EcoRI GAATTC 3 cut(s) 577, 762, 909
EcoRII CCWGG 1 cut(s) 1043
EcoRV GATATC 1 cut(s) 77
EcoT14I CCWWGG 3 cut(s) 322, 1127, 1397
EcoT22I ATGCAT 1 cut(s) 1322
EcoT38I GRGCYC 4 cut(s) 167, 350, 519, 1575
ErhI CCWWGG 3 cut(s) 322, 1127, 1397
Esp3I CGTCTC 1 cut(s) 321
FaeI CATG 9 cut(s) 151, 241, 249, 290, 326, 699, 771, 947, 990
FalI AAGNNNNNCTT 2 cut(s) 820, 852
FatI CATG 9 cut(s) 147, 237, 245, 286, 322, 695, 767, 943, 986
FblI GTMKAC 1 cut(s) 1298
FokI GGATG 4 cut(s) 25, 220, 1307, 1468
FriOI GRGCYC 4 cut(s) 167, 350, 519, 1575
FspBI CTAG 5 cut(s) 444, 689, 731, 1083, 1106
GsaI CCCAGC 1 cut(s) 1100
GsuI CTGGAG 3 cut(s) 510, 546, 798
HaeIII GGCC 1 cut(s) 320
HapII CCGG 4 cut(s) 98, 118, 317, 540
Hin1II CATG 9 cut(s) 151, 241, 249, 290, 326, 699, 771, 947, 990
HindIII AAGCTT 2 cut(s) 203, 1558
HpaII CCGG 4 cut(s) 98, 118, 317, 540
HphI GGTGA 2 cut(s) 71, 1112
Hpy166II GTNNAC 4 cut(s) 57, 673, 1299, 1427
Hpy188III TCNNGA 9 cut(s) 38, 409, 444, 563, 570, 689, 914, 1305, 1568
Hpy8I GTNNAC 4 cut(s) 57, 673, 1299, 1427
HpyAV CCTTC 5 cut(s) 716, 1000, 1129, 1525, 1531
HpyCH4III ACNGT 2 cut(s) 902, 1447
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 6 cut(s) 233, 795, 833, 947, 976, 1320
HpyF10VI GCNNNNNNNGC 3 cut(s) 934, 1102, 1570
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 9 cut(s) 151, 241, 249, 290, 326, 699, 771, 947, 990
Kzo9I GATC 9 cut(s) 289, 354, 1009, 1145, 1229, 1310, 1328, 1376, 1477
LguI GCTCTTC 3 cut(s) 172, 553, 918
LmnI GCTCC 2 cut(s) 1173, 1570
LweI GCATC 6 cut(s) 242, 634, 827, 842, 1329, 1504
MaeI CTAG 5 cut(s) 444, 689, 731, 1083, 1106
MaeII ACGT 1 cut(s) 336
MalI GATC 9 cut(s) 291, 356, 1011, 1147, 1231, 1312, 1330, 1378, 1479
MboI GATC 9 cut(s) 289, 354, 1009, 1145, 1229, 1310, 1328, 1376, 1477
MfeI CAATTG 1 cut(s) 1278
MflI RGATCY 4 cut(s) 354, 1145, 1376, 1477
MhlI GDGCHC 6 cut(s) 138, 167, 350, 519, 1197, 1575
MlyI GAGTC 3 cut(s) 43, 575, 1304
MmeI TCCRAC 1 cut(s) 1055
Mph1103I ATGCAT 1 cut(s) 1322
MroXI GAANNNNTTC 2 cut(s) 577, 927
MseI TTAA 5 cut(s) 198, 207, 897, 1178, 1491
MspI CCGG 4 cut(s) 98, 118, 317, 540
MspR9I CCNGG 2 cut(s) 540, 1045
MunI CAATTG 1 cut(s) 1278
Mva1269I GAATGC 2 cut(s) 499, 939
MvaI CCWGG 1 cut(s) 1045
MwoI GCNNNNNNNGC 3 cut(s) 934, 1102, 1570
NciI CCSGG 1 cut(s) 540
NcoI CCATGG 1 cut(s) 322
NdeII GATC 9 cut(s) 289, 354, 1009, 1145, 1229, 1310, 1328, 1376, 1477
NlaIII CATG 9 cut(s) 151, 241, 249, 290, 326, 699, 771, 947, 990
NlaIV GGNNCC 1 cut(s) 156
NmeAIII GCCGAG 1 cut(s) 96
NsiI ATGCAT 1 cut(s) 1322
NspI RCATGY 1 cut(s) 699
NspV TTCGAA 1 cut(s) 931
PciI ACATGT 1 cut(s) 695
PciSI GCTCTTC 3 cut(s) 172, 553, 918
PctI GAATGC 2 cut(s) 499, 939
PdmI GAANNNNTTC 2 cut(s) 577, 927
PflMI CCANNNNNTGG 1 cut(s) 569
PleI GAGTC 3 cut(s) 42, 574, 1303
PpsI GAGTC 3 cut(s) 42, 574, 1303
PscI ACATGT 1 cut(s) 695
PshBI ATTAAT 1 cut(s) 198
PsiI TTATAA 1 cut(s) 624
Psp124BI GAGCTC 3 cut(s) 167, 519, 1575
Psp6I CCWGG 1 cut(s) 1043
PspFI CCCAGC 1 cut(s) 1096
PspGI CCWGG 1 cut(s) 1043
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 319
PstNI CAGNNNCTG 1 cut(s) 569
PsuI RGATCY 4 cut(s) 354, 1145, 1376, 1477
RsaI GTAC 5 cut(s) 335, 614, 700, 1428, 1438
RsaNI GTAC 5 cut(s) 334, 613, 699, 1427, 1437
SacI GAGCTC 3 cut(s) 167, 519, 1575
SapI GCTCTTC 3 cut(s) 172, 553, 918
SaqAI TTAA 5 cut(s) 198, 207, 897, 1178, 1491
Sau3AI GATC 9 cut(s) 289, 354, 1009, 1145, 1229, 1310, 1328, 1376, 1477
Sau96I GGNCC 1 cut(s) 319
SchI GAGTC 3 cut(s) 43, 575, 1304
ScrFI CCNGG 2 cut(s) 540, 1045
SduI GDGCHC 6 cut(s) 138, 167, 350, 519, 1197, 1575
SfaNI GCATC 6 cut(s) 242, 634, 827, 842, 1329, 1504
SfuI TTCGAA 1 cut(s) 931
SmlI CTYRAG 5 cut(s) 131, 341, 826, 953, 1196
SmoI CTYRAG 5 cut(s) 131, 341, 826, 953, 1196
SspI AATATT 1 cut(s) 1163
SspMI CTAG 5 cut(s) 444, 689, 731, 1083, 1106
SstI GAGCTC 3 cut(s) 167, 519, 1575
StyD4I CCNGG 2 cut(s) 538, 1043
StyI CCWWGG 3 cut(s) 322, 1127, 1397
TaaI ACNGT 2 cut(s) 902, 1447
TaiI ACGT 1 cut(s) 339
TaqI TCGA 6 cut(s) 124, 379, 473, 931, 1502, 1551
TaqII GACCGA 1 cut(s) 774
TatI WGTACW 3 cut(s) 612, 698, 1426
Tru1I TTAA 5 cut(s) 198, 207, 897, 1178, 1491
Tru9I TTAA 5 cut(s) 198, 207, 897, 1178, 1491
TscAI CASTG 5 cut(s) 301, 559, 802, 1008, 1174
TspDTI ATGAA 9 cut(s) 29, 136, 234, 378, 453, 735, 828, 975, 1227
TspGWI ACGGA 2 cut(s) 761, 1375
TspRI CASTG 5 cut(s) 301, 559, 802, 1008, 1174
Van91I CCANNNNNTGG 1 cut(s) 569
VspI ATTAAT 1 cut(s) 198
XapI RAATTY 5 cut(s) 577, 762, 781, 789, 909
XbaI TCTAGA 2 cut(s) 443, 688
XceI RCATGY 1 cut(s) 699
XmiI GTMKAC 1 cut(s) 1298
XmnI GAANNNNTTC 2 cut(s) 577, 927
XspI CTAG 5 cut(s) 444, 689, 731, 1083, 1106
Zsp2I ATGCAT 1 cut(s) 1322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.