RLG00000035137

Protein UPSTREAM OF FLC isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006878
Physical Location & Seq
Reverse (-)
61437106 .. 61440485
3380 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035137

Sequence Viewer

Length: 1590 bp
ATGGAGGGTAGGATGAAAAAGTATAGACAAGTGAGTCCTGGGAGGGCTAAAGTGTGGACTGAGAAGTCGCCGAAATACCACCAGAATCGGAAAGTTCCGGTGGTTTATTACCTCTGCCGGAACCGACAGCTTGAACACCCTCATTTCATGGAGGTTCCTGTAAGCTCTTCTCAAGGTCTCTACCTCAGAGATGTGATTAATAAGCTTAATGCTCTGAGGGGCAGAGGGATAGCATCCATGTATTCATGGTCTTCTAAGAGAAGCTATAAGAATGGTTATGTTTGGCATGATCTCAGTGAAGATGATGTGATTCTTCCAGCCCATGGAGACGAGTACGTCCTCAAAGGTTCTGAGATCTTTGATGAATCCAATACAGATCGATTCAGTCCGATAGCAAATGTCAAAATCCAGAACTTGAAACAATTACCGGAACCAACATCTTCTAGAAGCCAAGATGATTCTTCATCGTCTTCCAGTTTGAATGGAAAGGAGACAAAGCAGTCCCATGAAGATGAGCTCTGTCCTCCAGTTGAACGACCAGGAGGCTCTTCCAGTGTGTCTCCAGAGTCTGGAAAGAATTCTTCTTGGGGTGGTTCTCTGAGCTTGACAGAGTACAAGGTTTACAAGAGTGATGGTTTAGCTGATGCTTCTACACAGACTGAAGAAAATGTGAACAAACTTAAAGCTCTAGAAACATGTACAAGGGGTGTTTCCACAGATGATGGGTCACTAGAACCTGATTGCGGTTATTACCAAGACCGAATTCCATGTTTGAAAGAGAATTCTGAGATTTGCAGTGATTCTGTTTCCCCTCCTCCATCTTCCTCAAGTCCATCTTCATCGGGTGGGAAGACTGAAACTTTAGAATCACTTATTAGGGCTGATGTTAGTAAAATTAACAGTTTTAGAATTCTTGAAGAGGAAGAGCTTCGAATGCCAAACAATGCAAGGCTCAAGGCTAGTAATGTACTTATGCAACTCATTTCATGTGGGTCAATATCAGTGAAGGATCATAGTTTTGGTCTTGTTCCAACCTACAAGCCCAGGTTTTCCCATTCTAAGTTTCCCTCGCCATTATTTTCTAGTTCAATAATGCTGGGTGAGCTAGACAGCCTGTCAGAGAATCCAAGGCTAAAGGGTTTGAAATTGGAAGATAAAGAATATTTCAGTGGGAGCTTGATTGATAGTAAAGTGCTCAAGGAGGAAGATGGACATACAGCTCTAAAGCGATCATCTTCATACAATGCCGACAGGAATTGTAATAAGACGCCAGATTCAGTCGAGGTCAAAGAGAAGGAGTCTACCTCAGGACGCTCAAAATGCATCCTAAGATCGATCAAGGCTTCACTAAACAAGCAACCACGGAGTGAATCTATGAGATCTCCTATTTCTGATAAACCAAGGAACTCCTCAGATGGAGTTGATGGTGTACAAAGCAATACCCCTACTGTATCCAATGGAGGTTGTAAAAGAATCACAGATCCATCCTCTGTTAAAAAGCAATCGAAGAGGGTAGATGCTTTCAGAGGAGAGAAGGAGAAGGCTTGCTTCAGGAGCTCGGGTTGTAATCCAATCAAGAGCACCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF966

Protein Analysis

530

Amino Acids

58.49

Weight (kDa)

8.78

Isoelectric Point (pI)

60.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOK PF06136 32 - 120 7.7e-50 SOSEKI protein DIX-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 4 cut(s) 33, 64, 335, 499
AccB7I CCANNNNNTGG 2 cut(s) 323, 569
AccI GTMKAC 1 cut(s) 1301
AciI CCGC 1 cut(s) 744
AclWI GGATC 2 cut(s) 1017, 1475
AcsI RAATTY 4 cut(s) 577, 762, 781, 909
AcuI CTGAAG 2 cut(s) 681, 1534
AcyI GRCGYC 1 cut(s) 1268
AdeI CACNNNGTG 1 cut(s) 1367
AfaI GTAC 5 cut(s) 335, 614, 700, 969, 1431
AfiI CCNNNNNNNGG 3 cut(s) 323, 569, 743
AflIII ACRYGT 1 cut(s) 695
AgsI TTSAA 8 cut(s) 134, 418, 481, 533, 775, 917, 1089, 1144
AhdI GACNNNNNGTC 1 cut(s) 1114
AjnI CCWGG 3 cut(s) 37, 538, 1043
AjuI GAANNNNNNNTTGG 2 cut(s) 747, 779
Alw21I GWGCWC 4 cut(s) 519, 1197, 1559, 1583
Alw26I GTCTC 4 cut(s) 182, 321, 485, 564
AlwI GGATC 2 cut(s) 1017, 1475
AlwNI CAGNNNCTG 1 cut(s) 569
Ama87I CYCGRG 1 cut(s) 1558
ApoI RAATTY 4 cut(s) 577, 762, 781, 909
AseI ATTAAT 1 cut(s) 198
Asp700I GAANNNNTTC 2 cut(s) 577, 927
AsuHPI GGTGA 1 cut(s) 1112
AsuII TTCGAA 1 cut(s) 931
AvaI CYCGRG 1 cut(s) 1558
AxyI CCTNAGG 1 cut(s) 1306
BanII GRGCYC 2 cut(s) 519, 1559
BbsI GAAGAC 3 cut(s) 243, 462, 857
Bbv12I GWGCWC 4 cut(s) 519, 1197, 1559, 1583
BccI CCATC 8 cut(s) 626, 716, 826, 841, 1202, 1409, 1418, 1492
BciT130I CCWGG 3 cut(s) 39, 540, 1045
BciVI GTATCC 1 cut(s) 1462
BcoDI GTCTC 4 cut(s) 182, 321, 485, 564
BfaI CTAG 6 cut(s) 444, 689, 731, 960, 1083, 1106
BfuI GTATCC 1 cut(s) 1462
BglII AGATCT 2 cut(s) 354, 1379
Bme1390I CCNGG 3 cut(s) 39, 540, 1045
BmeRI GACNNNNNGTC 1 cut(s) 1114
BmeT110I CYCGRG 1 cut(s) 1558
BmiI GGNNCC 3 cut(s) 122, 156, 432
BmrFI CCNGG 3 cut(s) 39, 540, 1045
BmsI GCATC 4 cut(s) 242, 634, 1332, 1507
BpiI GAAGAC 3 cut(s) 243, 462, 857
BplI GAGNNNNNCTC 2 cut(s) 1289, 1321
BpmI CTGGAG 2 cut(s) 510, 546
Bpu14I TTCGAA 1 cut(s) 931
BpuEI CTTGAG 4 cut(s) 156, 811, 938, 1181
Bsa29I ATCGAT 2 cut(s) 379, 1334
BsaHI GRCGYC 1 cut(s) 1268
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 6 cut(s) 38, 322, 1043, 1127, 1361, 1400
BsaWI WCCGGW 2 cut(s) 97, 427
BsaXI ACNNNNNCTCC 2 cut(s) 1546, 1576
Bsc4I CCNNNNNNNGG 3 cut(s) 323, 569, 743
Bse1I ACTGG 3 cut(s) 474, 527, 552
Bse21I CCTNAGG 1 cut(s) 1306
BseBI CCWGG 3 cut(s) 39, 540, 1045
BseCI ATCGAT 2 cut(s) 379, 1334
BseDI CCNNGG 6 cut(s) 38, 322, 1043, 1127, 1361, 1400
BseGI GGATG 4 cut(s) 18, 233, 1323, 1484
BseLI CCNNNNNNNGG 3 cut(s) 323, 569, 743
BseMII CTCAG 9 cut(s) 51, 199, 206, 307, 342, 590, 777, 1320, 1425
BseNI ACTGG 3 cut(s) 474, 527, 552
BseRI GAGGAG 3 cut(s) 804, 1399, 1542
BseYI CCCAGC 1 cut(s) 1096
BshVI ATCGAT 2 cut(s) 379, 1334
BsiHKAI GWGCWC 4 cut(s) 519, 1197, 1559, 1583
BsiHKCI CYCGRG 1 cut(s) 1558
BsiSI CCGG 3 cut(s) 98, 118, 428
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 3 cut(s) 323, 569, 743
BsmAI GTCTC 4 cut(s) 182, 321, 485, 564
BsmBI CGTCTC 1 cut(s) 321
BsmFI GGGAC 1 cut(s) 487
BsmI GAATGC 1 cut(s) 939
Bso31I GGTCTC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 1558
Bsp119I TTCGAA 1 cut(s) 931
Bsp1286I GDGCHC 4 cut(s) 519, 1197, 1559, 1583
Bsp1407I TGTACA 2 cut(s) 698, 1429
Bsp143I GATC 9 cut(s) 289, 354, 376, 1009, 1229, 1331, 1335, 1379, 1480
Bsp19I CCATGG 1 cut(s) 322
BspACI CCGC 1 cut(s) 744
BspCNI CTCAG 9 cut(s) 52, 198, 207, 306, 343, 591, 778, 1319, 1424
BspDI ATCGAT 2 cut(s) 379, 1334
BspHI TCATGA 1 cut(s) 1586
BspLI GGNNCC 3 cut(s) 122, 156, 432
BspPI GGATC 2 cut(s) 1017, 1475
BspQI GCTCTTC 3 cut(s) 172, 553, 918
BspT104I TTCGAA 1 cut(s) 931
BspTNI GGTCTC 1 cut(s) 182
BsrGI TGTACA 2 cut(s) 698, 1429
BsrI ACTGG 3 cut(s) 474, 527, 552
BssECI CCNNGG 6 cut(s) 38, 322, 1043, 1127, 1361, 1400
BssMI GATC 9 cut(s) 289, 354, 376, 1009, 1229, 1331, 1335, 1379, 1480
BssNI GRCGYC 1 cut(s) 1268
BssT1I CCWWGG 3 cut(s) 322, 1127, 1400
Bst2UI CCWGG 3 cut(s) 39, 540, 1045
Bst4CI ACNGT 2 cut(s) 902, 1450
Bst6I CTCTTC 5 cut(s) 172, 553, 912, 918, 1502
BstACI GRCGYC 1 cut(s) 1268
BstAUI TGTACA 2 cut(s) 698, 1429
BstBI TTCGAA 1 cut(s) 931
BstC8I GCNNGC 1 cut(s) 1546
BstDSI CCRYGG 2 cut(s) 322, 1361
BstF5I GGATG 4 cut(s) 18, 233, 1323, 1484
BstKTI GATC 9 cut(s) 292, 357, 379, 1012, 1232, 1334, 1338, 1382, 1483
BstMAI GTCTC 4 cut(s) 182, 321, 485, 564
BstMBI GATC 9 cut(s) 289, 354, 376, 1009, 1229, 1331, 1335, 1379, 1480
BstMWI GCNNNNNNNGC 4 cut(s) 934, 1102, 1320, 1554
BstNI CCWGG 3 cut(s) 39, 540, 1045
BstNSI RCATGY 1 cut(s) 699
BstSCI CCNGG 3 cut(s) 37, 538, 1043
BstV2I GAAGAC 3 cut(s) 243, 462, 857
BstX2I RGATCY 3 cut(s) 354, 1379, 1480
BstYI RGATCY 3 cut(s) 354, 1379, 1480
Bsu15I ATCGAT 2 cut(s) 379, 1334
Bsu36I CCTNAGG 1 cut(s) 1306
BsuI GTATCC 1 cut(s) 1462
BsuTUI ATCGAT 2 cut(s) 379, 1334
BtgI CCRYGG 2 cut(s) 322, 1361
BtsCI GGATG 4 cut(s) 18, 233, 1323, 1484
BtsI GCAGTG 1 cut(s) 802
BtsIMutI CAGTG 5 cut(s) 301, 559, 802, 1008, 1174
Cac8I GCNNGC 1 cut(s) 1546
CaiI CAGNNNCTG 1 cut(s) 569
CciI TCATGA 1 cut(s) 1586
ClaI ATCGAT 2 cut(s) 379, 1334
CseI GACGC 2 cut(s) 1276, 1320
Csp6I GTAC 5 cut(s) 334, 613, 699, 968, 1430
CviQI GTAC 5 cut(s) 334, 613, 699, 968, 1430
DpnI GATC 9 cut(s) 291, 356, 378, 1011, 1231, 1333, 1337, 1381, 1482
DpnII GATC 9 cut(s) 289, 354, 376, 1009, 1229, 1331, 1335, 1379, 1480
DraIII CACNNNGTG 1 cut(s) 1367
DrdI GACNNNNNNGTC 4 cut(s) 33, 64, 335, 499
DriI GACNNNNNGTC 1 cut(s) 1114
DseDI GACNNNNNNGTC 4 cut(s) 33, 64, 335, 499
Eam1104I CTCTTC 5 cut(s) 172, 553, 912, 918, 1502
Eam1105I GACNNNNNGTC 1 cut(s) 1114
EarI CTCTTC 5 cut(s) 172, 553, 912, 918, 1502
Ecl136II GAGCTC 2 cut(s) 517, 1557
Eco130I CCWWGG 3 cut(s) 322, 1127, 1400
Eco24I GRGCYC 2 cut(s) 519, 1559
Eco31I GGTCTC 1 cut(s) 182
Eco53kI GAGCTC 2 cut(s) 517, 1557
Eco57I CTGAAG 2 cut(s) 681, 1534
Eco81I CCTNAGG 1 cut(s) 1306
Eco88I CYCGRG 1 cut(s) 1558
EcoICRI GAGCTC 2 cut(s) 517, 1557
EcoRI GAATTC 4 cut(s) 577, 762, 781, 909
EcoRII CCWGG 3 cut(s) 37, 538, 1043
EcoT14I CCWWGG 3 cut(s) 322, 1127, 1400
EcoT22I ATGCAT 1 cut(s) 1325
EcoT38I GRGCYC 2 cut(s) 519, 1559
ErhI CCWWGG 3 cut(s) 322, 1127, 1400
Esp3I CGTCTC 1 cut(s) 321
FalI AAGNNNNNCTT 4 cut(s) 820, 852, 1532, 1564
FaqI GGGAC 1 cut(s) 487
FblI GTMKAC 1 cut(s) 1301
FokI GGATG 4 cut(s) 25, 220, 1310, 1471
FriOI GRGCYC 2 cut(s) 519, 1559
FspBI CTAG 6 cut(s) 444, 689, 731, 960, 1083, 1106
GsaI CCCAGC 1 cut(s) 1100
GsuI CTGGAG 2 cut(s) 510, 546
HapII CCGG 3 cut(s) 98, 118, 428
HgaI GACGC 2 cut(s) 1276, 1320
Hin1I GRCGYC 1 cut(s) 1268
HindIII AAGCTT 1 cut(s) 203
HpaII CCGG 3 cut(s) 98, 118, 428
HphI GGTGA 1 cut(s) 1112
Hpy166II GTNNAC 5 cut(s) 57, 622, 673, 1302, 1430
Hpy8I GTNNAC 5 cut(s) 57, 622, 673, 1302, 1430
HpyAV CCTTC 4 cut(s) 1000, 1288, 1528, 1534
HpyCH4III ACNGT 2 cut(s) 902, 1450
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 4 cut(s) 795, 947, 976, 1323
HpyF10VI GCNNNNNNNGC 4 cut(s) 934, 1102, 1320, 1554
HpySE526I ACGT 1 cut(s) 336
Hsp92I GRCGYC 1 cut(s) 1268
Kzo9I GATC 9 cut(s) 289, 354, 376, 1009, 1229, 1331, 1335, 1379, 1480
LguI GCTCTTC 3 cut(s) 172, 553, 918
LmnI GCTCC 2 cut(s) 1173, 1554
LweI GCATC 4 cut(s) 242, 634, 1332, 1507
MaeI CTAG 6 cut(s) 444, 689, 731, 960, 1083, 1106
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 726
MalI GATC 9 cut(s) 291, 356, 378, 1011, 1231, 1333, 1337, 1381, 1482
MboI GATC 9 cut(s) 289, 354, 376, 1009, 1229, 1331, 1335, 1379, 1480
MflI RGATCY 3 cut(s) 354, 1379, 1480
MhlI GDGCHC 4 cut(s) 519, 1197, 1559, 1583
MluCI AATT 8 cut(s) 422, 577, 762, 781, 894, 909, 1145, 1255
MlyI GAGTC 3 cut(s) 43, 575, 1307
MmeI TCCRAC 1 cut(s) 1055
Mph1103I ATGCAT 1 cut(s) 1325
MroXI GAANNNNTTC 2 cut(s) 577, 927
MseI TTAA 5 cut(s) 198, 207, 681, 897, 1494
MslI CAYNNNNRTG 1 cut(s) 510
MspI CCGG 3 cut(s) 98, 118, 428
MspR9I CCNGG 3 cut(s) 39, 540, 1045
Mva1269I GAATGC 1 cut(s) 939
MvaI CCWGG 3 cut(s) 39, 540, 1045
MwoI GCNNNNNNNGC 4 cut(s) 934, 1102, 1320, 1554
NcoI CCATGG 1 cut(s) 322
NdeII GATC 9 cut(s) 289, 354, 376, 1009, 1229, 1331, 1335, 1379, 1480
NlaIV GGNNCC 3 cut(s) 122, 156, 432
NmuCI GTSAC 1 cut(s) 726
NsiI ATGCAT 1 cut(s) 1325
NspI RCATGY 1 cut(s) 699
NspV TTCGAA 1 cut(s) 931
PagI TCATGA 1 cut(s) 1586
PciI ACATGT 1 cut(s) 695
PciSI GCTCTTC 3 cut(s) 172, 553, 918
PctI GAATGC 1 cut(s) 939
PdmI GAANNNNTTC 2 cut(s) 577, 927
PflMI CCANNNNNTGG 2 cut(s) 323, 569
PleI GAGTC 3 cut(s) 42, 574, 1306
PpsI GAGTC 3 cut(s) 42, 574, 1306
PscI ACATGT 1 cut(s) 695
PshBI ATTAAT 1 cut(s) 198
Psp124BI GAGCTC 2 cut(s) 519, 1559
Psp6I CCWGG 3 cut(s) 37, 538, 1043
PspFI CCCAGC 1 cut(s) 1096
PspGI CCWGG 3 cut(s) 37, 538, 1043
PspN4I GGNNCC 3 cut(s) 122, 156, 432
PstNI CAGNNNCTG 1 cut(s) 569
PsuI RGATCY 3 cut(s) 354, 1379, 1480
RsaI GTAC 5 cut(s) 335, 614, 700, 969, 1431
RsaNI GTAC 5 cut(s) 334, 613, 699, 968, 1430
RseI CAYNNNNRTG 1 cut(s) 510
SacI GAGCTC 2 cut(s) 519, 1559
SapI GCTCTTC 3 cut(s) 172, 553, 918
SaqAI TTAA 5 cut(s) 198, 207, 681, 897, 1494
Sau3AI GATC 9 cut(s) 289, 354, 376, 1009, 1229, 1331, 1335, 1379, 1480
SchI GAGTC 3 cut(s) 43, 575, 1307
ScrFI CCNGG 3 cut(s) 39, 540, 1045
SduI GDGCHC 4 cut(s) 519, 1197, 1559, 1583
SfaNI GCATC 4 cut(s) 242, 634, 1332, 1507
SfuI TTCGAA 1 cut(s) 931
SmiMI CAYNNNNRTG 1 cut(s) 510
SmlI CTYRAG 4 cut(s) 171, 826, 953, 1196
SmoI CTYRAG 4 cut(s) 171, 826, 953, 1196
Sse9I AATT 8 cut(s) 422, 577, 762, 781, 894, 909, 1145, 1255
SsiI CCGC 1 cut(s) 744
SspI AATATT 1 cut(s) 1163
SspMI CTAG 6 cut(s) 444, 689, 731, 960, 1083, 1106
SstI GAGCTC 2 cut(s) 519, 1559
StyD4I CCNGG 3 cut(s) 37, 538, 1043
StyI CCWWGG 3 cut(s) 322, 1127, 1400
TaaI ACNGT 2 cut(s) 902, 1450
TaiI ACGT 1 cut(s) 339
TaqI TCGA 5 cut(s) 379, 931, 1281, 1334, 1505
TaqII GACCGA 1 cut(s) 774
TasI AATT 8 cut(s) 422, 577, 762, 781, 894, 909, 1145, 1255
TatI WGTACW 4 cut(s) 612, 698, 967, 1429
Tru1I TTAA 5 cut(s) 198, 207, 681, 897, 1494
Tru9I TTAA 5 cut(s) 198, 207, 681, 897, 1494
TscAI CASTG 5 cut(s) 301, 559, 802, 1008, 1174
TseFI GTSAC 1 cut(s) 726
Tsp45I GTSAC 1 cut(s) 726
TspDTI ATGAA 9 cut(s) 29, 136, 234, 378, 453, 522, 828, 975, 1227
TspGWI ACGGA 1 cut(s) 1378
TspRI CASTG 5 cut(s) 301, 559, 802, 1008, 1174
Van91I CCANNNNNTGG 2 cut(s) 323, 569
VspI ATTAAT 1 cut(s) 198
XapI RAATTY 4 cut(s) 577, 762, 781, 909
XbaI TCTAGA 2 cut(s) 443, 688
XceI RCATGY 1 cut(s) 699
XmiI GTMKAC 1 cut(s) 1301
XmnI GAANNNNTTC 2 cut(s) 577, 927
XspI CTAG 6 cut(s) 444, 689, 731, 960, 1083, 1106
Zsp2I ATGCAT 1 cut(s) 1325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.