Rorug05G0303800

Protein UPSTREAM OF FLC isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006878
Physical Location & Seq
Forward (+)
35378690 .. 35381728
3039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0303800.1

Sequence Viewer

Length: 2934 bp
ATGGGAATATCGCGGTGCAACATTTCTTTTCTGCAGCTCTTTCTTTTTCTGTTACTCAATGTCACCCACTTCTTGTCATTTGTGCAGACACTCTGCCATGTTGATGAGGGCTCTGCCTTGTTGCAATTCAAGGAAAGCTTCAGTATACACAAGTCTGCATCTGAAAATCCGTTTGCTTACCCGAAGGTTGCGTCTTGGACAAGAAAAGGTGGAGAGAGGAGCAATTGCTGCTCTTGGGATGGTGTTGAGTGCAATGAGGAGACTGGCCATGTTATTGGCCTTGACCTCAGAAGCAGCTGTCTGTATGGTTCTGTCAACTCCAATAGCAGCCTTTTCCAAGTACTTGTGCACTTGCAGAAGCTTGATCTCTCGGATAATCACTTCAATTTCTCAGAAATACCATCAACATTAGGCCATCTTACGAGTCTTGCATATCTTAACCTTTCAAAGTCCTCATTTTCTGGTCTGATTCCAACCGAAATTTCAAAGTTATCTAAGCTCTCTGCCATTGATCTCTCTTTCAATTATGAAAATTCCACTGATCAGTTGTTGAGACTGGAAAAGGCCAGCCAGCTGAGAAGCCTGGTTCTAAACTTAACCCACCTAAAACAACTTCATCTTAGTAGAGTTAACATACCCTTCACTGTGCCTGATGTCTTGGTCAATGCATCTTCTCTCACTTCTCTCCGCCTAGAAAACTGTGGGTTAATTGGAGAATTCCCTGTTGGCATCTTCCATCTACCAAACTTGCAGGTTCTTGATTTGGACACTAACCAAGACCTGACAGGTCACTTTCCTGATTTCAACAGGAGTAGTCCCTTGGAGTATCTGAATGTTGCGAGGACGAGTTTCTCTGGTTACTTACCTGCTTCACTCGGTAACCTTCGTTCCTTAAAATTCTTGAACATTGAGTATTGTGAGTTTAACTCTCACCTTCCATCTTCACTTGGCAATCTTACCGAGCTCAATTACCTTGATCTTTCATTTTTTTTCGACCGTAGTTTCACTCACTCAGACATTTCACCAAACAATTTTAGTCTCGTAGATTCCTGGTCTTGCATCGGAAAGCTTACCAAACTTCAGCACTTGGGCCTTGGCCATACCTACTTGAAGGGAGAGTTTCCAACTTTTGTGGCTAACCTGACTCAACTAGAAGAGCTCAACTTGGGCAATAACCATATAACTGGTGAAATCCCATCATGGCTTACGAAGTTTACCAAATTAACTCTTCTAAACCTTCGGTTTAACAATTTGCAAGGAGCAATTCCAAGGTCACTATTCTATCTTCATAATCTTGAACTTCTTGACCTTTCTTCAAATAACTTAATTGGATCAGTTGATTTTGATACGTTTTTCAACCTCAAGAAGTTAAGGGTGCTTAAATTATCATTCAACAAGTTATCTCTTCAGATGAAAAGTGGTTTGAGTGCTACTGCTCCAAAGTTTGAAGTTCTGAAATTAGGTTCATGCAATTTGACCGAGTTTCCAGAATTTTTAAAGAATAGTAGTAGATTGGTTGATCTAGACCTATCTGACAACTATATTCAGGGCCAAATACCGAAATGGATGTGGAACTCAAGTAGAGAAACCTTGTTGTGTCTTAACCTCTCTGGAAACTCTTTATCTGGATTTGACCAAAACCTTGTTGGTCTTCCATGGAGGAATCTCAAAGTTTTTCAGCTTGGGTTTAACAGGATACAAGGATCACTGCCAGCTCCACCACCAACAATCAAAATTTATTCTGTTGCAAACAATGTTTACAGTGGAGAAATGTCAGCATCATTTTGCAACTTGAGTTCTCTACTTATTCTTGATTTGTCCAACAACAACTTGAGTGGCCTGATTCCACAATGCTTGGGTAACTCCGATGCTCTGGAGATATTGAACCTGCGGAATAACTCATTTCAGGGCCAAATTCCTCCAATGTGTACCAACGGAATTAGTTTTAAATCGGTCGACTTAAGTGAAAATATGTTGCAGGGCGAGCTACCAACATCTATGGCCAATTGTACTCGGCTAGAGTTTCTTAATTTGGGAAAGAATCAGATTAGTGGCATCTTACCAACTTGGTTATGGGATCTTCCAGTTTTAAGGGTTCTCAGGTTGCGGTCCAATAGATTTTATGGCACAATTGTCGCGGCTCCAACAAACCTCGGGTCCTCAATAGAGTTGTGCATCATTGACTTATCTCACAATTCTTTTTCAGGTACGCTGCCAATCCTGCCACACAACTATGAGGCATACTGGAATTGCCTCGAATCGGTTGGCGGTATTTATGAAGAGCCAACAATGTTCCAAGATACTTACAGAGTTGGTGCTGTAACGTATCATTATGATTACTCGATGTCAATATCTGGCATAGGTGTTGTGTTGAAACCTTTGAAGTACGCCGATTCTCCTTACTTCAAAGTCATAGATCTCTCAAGTAACAAATTTGAAGGAGAGATTCCAACCACTGTGTACGAGCATCTGGTGGGGCTTCAATTGCTTAACCTCTCCAACAACATTCTCATTGGTAGTATCCCTTCATCTATAGGGAACTGGACTGGACTTGAATCATTGGATCTCTCCAATAACCATCTTTCAGGAGAGATACCCAGAAGTCTAGAAAACCAATTCCTTACGTTTGTCGACAGCAGTTCGTACGTAGGAAACCCGGGTTTGTGCGGATTTCCTTTGCAAGTGAAATGTGAAGATTCTGAGACTTCAAAGTCACCACCTCCAGGCTTTATTGAAGAAGATCACCAAGACCCTGATTATCCATTTGAATGGCGTTTATTCTTCCCTGCAGGACTTGCAAGTGGGTTGGTTGTTGGATTTGTTGCTGGGAACACTTTAACAACCAATAAGCAGCAATGGTTCGTAGAGAAATTTTGCAAGAGGAGGAGGCAGCCAAGACGCACAAAGGGGAGAAGGGCGCACAGAAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF966

Protein Analysis

977

Amino Acids

109.23

Weight (kDa)

6.14

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 35 - 85 1.8e-07 Leucine rich repeat N-terminal domain
LRR_14 PF23598 115 - 198 7.6e-06 Leucine-rich repeat region
LRR_8 PF13855 117 - 175 4.6e-06 Leucine rich repeat
LRR_14 PF23598 250 - 327 4.1e-07 Leucine-rich repeat region
LRR_14 PF23598 351 - 539 2.6e-12 Leucine-rich repeat region
LRR_8 PF13855 359 - 418 6.6e-07 Leucine rich repeat
LRR_8 PF13855 383 - 442 5.4e-08 Leucine rich repeat
LRR_8 PF13855 407 - 467 1.4e-07 Leucine rich repeat
LRR_8 PF13855 594 - 634 9.3e-06 Leucine rich repeat
LRR_8 PF13855 650 - 707 1.2e-07 Leucine rich repeat
LRR_8 PF13855 803 - 861 1.5e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2710
Acc36I ACCTGC 3 cut(s) 742, 874, 1896
AccI GTMKAC 3 cut(s) 145, 1956, 2631
AccII CGCG 2 cut(s) 13, 2138
AciI CCGC 7 cut(s) 13, 688, 1891, 2107, 2138, 2268, 2667
AclWI GGATC 4 cut(s) 1339, 1711, 2085, 2571
AcoI YGGCCR 3 cut(s) 265, 1096, 2001
AcuI CTGAAG 3 cut(s) 124, 1064, 1391
AfaI GTAC 7 cut(s) 342, 1930, 2011, 2209, 2387, 2462, 2645
AfiI CCNNNNNNNGG 2 cut(s) 2260, 2723
AflII CTTAAG 1 cut(s) 1960
AjnI CCWGG 3 cut(s) 582, 1049, 2722
AjuI GAANNNNNNNTTGG 4 cut(s) 466, 498, 708, 740
Alw21I GWGCWC 3 cut(s) 351, 966, 1161
Alw26I GTCTC 4 cut(s) 254, 547, 1043, 2696
Alw44I GTGCAC 1 cut(s) 347
AlwI GGATC 4 cut(s) 1339, 1711, 2085, 2571
Ama87I CYCGRG 2 cut(s) 2153, 2656
ApaLI GTGCAC 1 cut(s) 347
ApeKI GCWGC 7 cut(s) 34, 228, 294, 327, 2212, 2851, 2890
ArsI GACNNNNNNTTYG 4 cut(s) 176, 208, 2141, 2173
AspLEI GCGC 1 cut(s) 2920
AspS9I GGNCC 5 cut(s) 1090, 1549, 1909, 2109, 2157
AsuC2I CCSGG 2 cut(s) 2657, 2658
AsuHPI GGTGA 6 cut(s) 55, 923, 1014, 1199, 2706, 2735
AvaI CYCGRG 2 cut(s) 2153, 2656
AvaII GGWCC 2 cut(s) 2109, 2157
BaeGI GKGCMC 1 cut(s) 351
BalI TGGCCA 3 cut(s) 267, 1098, 2003
BanII GRGCYC 3 cut(s) 113, 966, 1161
BarI GAAGNNNNNNTAC 2 cut(s) 2509, 2541
BbsI GAAGAC 1 cut(s) 1643
Bbv12I GWGCWC 3 cut(s) 351, 966, 1161
BbvI GCAGC 7 cut(s) 46, 215, 306, 339, 2199, 2863, 2902
BccI CCATC 7 cut(s) 233, 409, 423, 744, 946, 1204, 2586
BcgI CGANNNNNNTGC 2 cut(s) 2116, 2150
BciT130I CCWGG 3 cut(s) 584, 1051, 2724
BciVI GTATCC 2 cut(s) 1689, 2531
BclI TGATCA 1 cut(s) 541
BcnI CCSGG 2 cut(s) 2657, 2658
BcoDI GTCTC 4 cut(s) 254, 547, 1043, 2696
BfaI CTAG 5 cut(s) 692, 1151, 1523, 2018, 2606
BfmI CTRYAG 3 cut(s) 32, 2532, 2787
BfrI CTTAAG 1 cut(s) 1960
BfuAI ACCTGC 3 cut(s) 742, 874, 1896
BfuI GTATCC 2 cut(s) 1689, 2531
BglII AGATCT 1 cut(s) 2416
BisI GCNGC 8 cut(s) 35, 229, 295, 328, 2139, 2213, 2852, 2891
BlsI GCNGC 8 cut(s) 36, 230, 296, 329, 2140, 2214, 2853, 2892
BmcAI AGTACT 1 cut(s) 342
Bme1390I CCNGG 5 cut(s) 584, 1051, 2657, 2658, 2724
Bme18I GGWCC 2 cut(s) 2109, 2157
BmeT110I CYCGRG 2 cut(s) 2153, 2656
BmgT120I GGNCC 5 cut(s) 1090, 1549, 1909, 2109, 2157
BmiI GGNNCC 2 cut(s) 2142, 2158
BmrFI CCNGG 5 cut(s) 584, 1051, 2657, 2658, 2724
BmsI GCATC 9 cut(s) 167, 677, 738, 1068, 1787, 1858, 2064, 2184, 2476
BpiI GAAGAC 1 cut(s) 1643
BplI GAGNNNNNCTC 2 cut(s) 911, 943
BpmI CTGGAG 2 cut(s) 1895, 2706
BpuEI CTTGAG 5 cut(s) 1346, 1561, 1813, 1852, 2407
BpuMI CCSGG 2 cut(s) 2657, 2658
BsaAI YACGTR 1 cut(s) 2647
BsaJI CCNNGG 6 cut(s) 819, 1093, 1268, 1655, 2152, 2656
Bsc4I CCNNNNNNNGG 2 cut(s) 2260, 2723
Bse1I ACTGG 7 cut(s) 268, 561, 1189, 2084, 2249, 2546, 2551
Bse3DI GCAATG 2 cut(s) 259, 2861
BseBI CCWGG 3 cut(s) 584, 1051, 2724
BseDI CCNNGG 6 cut(s) 819, 1093, 1268, 1655, 2152, 2656
BseGI GGATG 2 cut(s) 244, 1572
BseLI CCNNNNNNNGG 2 cut(s) 2260, 2723
BseMI GCAATG 2 cut(s) 259, 2861
BseMII CTCAG 6 cut(s) 301, 405, 566, 1026, 2113, 2691
BseNI ACTGG 7 cut(s) 268, 561, 1189, 2084, 2249, 2546, 2551
BseRI GAGGAG 4 cut(s) 232, 272, 2896, 2899
BseSI GKGCMC 1 cut(s) 351
BseXI GCAGC 7 cut(s) 46, 215, 306, 339, 2199, 2863, 2902
BseYI CCCAGC 1 cut(s) 2825
BsgI GTGCAG 1 cut(s) 104
Bsh1236I CGCG 2 cut(s) 13, 2138
Bsh1285I CGRYCG 2 cut(s) 997, 1956
BsiEI CGRYCG 2 cut(s) 997, 1956
BsiHKAI GWGCWC 3 cut(s) 351, 966, 1161
BsiHKCI CYCGRG 2 cut(s) 2153, 2656
BsiSI CCGG 1 cut(s) 2657
BsiWI CGTACG 1 cut(s) 2643
BslFI GGGAC 1 cut(s) 801
BslI CCNNNNNNNGG 2 cut(s) 2260, 2723
BsmAI GTCTC 4 cut(s) 254, 547, 1043, 2696
BsmFI GGGAC 1 cut(s) 801
BsoBI CYCGRG 2 cut(s) 2153, 2656
Bsp1286I GDGCHC 4 cut(s) 113, 351, 966, 1161
Bsp19I CCATGG 1 cut(s) 1655
BspACI CCGC 7 cut(s) 13, 688, 1891, 2107, 2138, 2268, 2667
BspCNI CTCAG 6 cut(s) 300, 404, 567, 1025, 2112, 2692
BspFNI CGCG 2 cut(s) 13, 2138
BspLI GGNNCC 2 cut(s) 2142, 2158
BspMAI CTGCAG 2 cut(s) 36, 2791
BspMI ACCTGC 3 cut(s) 742, 874, 1896
BspPI GGATC 4 cut(s) 1339, 1711, 2085, 2571
BspQI GCTCTTC 2 cut(s) 1149, 2274
BspTI CTTAAG 1 cut(s) 1960
BsrDI GCAATG 2 cut(s) 259, 2861
BsrI ACTGG 7 cut(s) 268, 561, 1189, 2084, 2249, 2546, 2551
BssECI CCNNGG 6 cut(s) 819, 1093, 1268, 1655, 2152, 2656
BssNAI GTATAC 1 cut(s) 146
BssT1I CCWWGG 4 cut(s) 819, 1093, 1268, 1655
Bst1107I GTATAC 1 cut(s) 146
Bst2UI CCWGG 3 cut(s) 584, 1051, 2724
Bst4CI ACNGT 5 cut(s) 646, 701, 998, 1763, 2458
Bst6I CTCTTC 4 cut(s) 1149, 1233, 1410, 2274
BstAFI CTTAAG 1 cut(s) 1960
BstAPI GCANNNNNTGC 2 cut(s) 228, 2795
BstBAI YACGTR 1 cut(s) 2647
BstC8I GCNNGC 4 cut(s) 568, 572, 1713, 1985
BstDEI CTNAG 8 cut(s) 287, 391, 495, 575, 620, 1012, 2099, 2700
BstDSI CCRYGG 1 cut(s) 1655
BstEII GGTNACC 1 cut(s) 878
BstF5I GGATG 2 cut(s) 244, 1572
BstFNI CGCG 2 cut(s) 13, 2138
BstHHI GCGC 1 cut(s) 2920
BstMAI GTCTC 4 cut(s) 254, 547, 1043, 2696
BstMCI CGRYCG 2 cut(s) 997, 1956
BstMWI GCNNNNNNNGC 5 cut(s) 228, 1984, 2221, 2485, 2795
BstNI CCWGG 3 cut(s) 584, 1051, 2724
BstPI GGTNACC 1 cut(s) 878
BstSCI CCNGG 5 cut(s) 582, 1049, 2655, 2656, 2722
BstSFI CTRYAG 3 cut(s) 32, 2532, 2787
BstSLI GKGCMC 1 cut(s) 351
BstSNI TACGTA 1 cut(s) 2647
BstUI CGCG 2 cut(s) 13, 2138
BstV1I GCAGC 7 cut(s) 46, 215, 306, 339, 2199, 2863, 2902
BstV2I GAAGAC 1 cut(s) 1643
BstX2I RGATCY 3 cut(s) 2077, 2416, 2563
BstXI CCANNNNNNTGG 3 cut(s) 275, 1184, 2769
BstYI RGATCY 3 cut(s) 2077, 2416, 2563
BstZ17I GTATAC 1 cut(s) 146
BsuI GTATCC 2 cut(s) 1689, 2531
BtgI CCRYGG 1 cut(s) 1655
BtsCI GGATG 2 cut(s) 244, 1572
BtsI GCAGTG 1 cut(s) 1706
BtsIMutI CAGTG 5 cut(s) 537, 642, 1706, 1768, 2454
BveI ACCTGC 3 cut(s) 742, 874, 1896
Cac8I GCNNGC 4 cut(s) 568, 572, 1713, 1985
CfoI GCGC 1 cut(s) 2920
Cfr13I GGNCC 5 cut(s) 1090, 1549, 1909, 2109, 2157
Cfr9I CCCGGG 1 cut(s) 2656
CseI GACGC 2 cut(s) 180, 2907
Csp6I GTAC 7 cut(s) 341, 1929, 2010, 2208, 2386, 2461, 2644
CspCI CAANNNNNGTGG 6 cut(s) 1113, 1148, 1816, 1836, 1851, 1871
CviAII CATG 5 cut(s) 98, 269, 1200, 1467, 1656
CviQI GTAC 7 cut(s) 341, 1929, 2010, 2208, 2386, 2461, 2644
DdeI CTNAG 8 cut(s) 287, 391, 495, 575, 620, 1012, 2099, 2700
DraI TTTAAA 2 cut(s) 1497, 1948
DrdI GACNNNNNNGTC 1 cut(s) 2710
DseDI GACNNNNNNGTC 1 cut(s) 2710
EaeI YGGCCR 3 cut(s) 265, 1096, 2001
Eam1104I CTCTTC 4 cut(s) 1149, 1233, 1410, 2274
EarI CTCTTC 4 cut(s) 1149, 1233, 1410, 2274
EciI GGCGGA 1 cut(s) 677
Ecl136II GAGCTC 2 cut(s) 964, 1159
Eco105I TACGTA 1 cut(s) 2647
Eco130I CCWWGG 4 cut(s) 819, 1093, 1268, 1655
Eco24I GRGCYC 3 cut(s) 113, 966, 1161
Eco47I GGWCC 2 cut(s) 2109, 2157
Eco53kI GAGCTC 2 cut(s) 964, 1159
Eco57I CTGAAG 3 cut(s) 124, 1064, 1391
Eco88I CYCGRG 2 cut(s) 2153, 2656
Eco91I GGTNACC 1 cut(s) 878
EcoICRI GAGCTC 2 cut(s) 964, 1159
EcoO109I RGGNCCY 1 cut(s) 2157
EcoO65I GGTNACC 1 cut(s) 878
EcoRI GAATTC 1 cut(s) 716
EcoRII CCWGG 3 cut(s) 582, 1049, 2722
EcoT14I CCWWGG 4 cut(s) 819, 1093, 1268, 1655
EcoT22I ATGCAT 1 cut(s) 670
EcoT38I GRGCYC 3 cut(s) 113, 966, 1161
ErhI CCWWGG 4 cut(s) 819, 1093, 1268, 1655
FaeI CATG 5 cut(s) 101, 272, 1203, 1470, 1659
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FaqI GGGAC 1 cut(s) 801
FatI CATG 5 cut(s) 97, 268, 1199, 1466, 1655
FbaI TGATCA 1 cut(s) 541
FblI GTMKAC 3 cut(s) 145, 1956, 2631
Fnu4HI GCNGC 8 cut(s) 35, 229, 295, 328, 2139, 2213, 2852, 2891
FokI GGATG 2 cut(s) 251, 1579
FriOI GRGCYC 3 cut(s) 113, 966, 1161
Fsp4HI GCNGC 8 cut(s) 35, 229, 295, 328, 2139, 2213, 2852, 2891
FspBI CTAG 5 cut(s) 692, 1151, 1523, 2018, 2606
GlaI GCGC 1 cut(s) 2919
GluI GCNGC 8 cut(s) 35, 229, 295, 328, 2139, 2213, 2852, 2891
GsaI CCCAGC 1 cut(s) 2829
GsuI CTGGAG 2 cut(s) 1895, 2706
HapII CCGG 1 cut(s) 2657
HgaI GACGC 2 cut(s) 180, 2907
HhaI GCGC 1 cut(s) 2920
Hin1II CATG 5 cut(s) 101, 272, 1203, 1470, 1659
Hin6I GCGC 1 cut(s) 2918
HinP1I GCGC 1 cut(s) 2918
HincII GTYRAC 4 cut(s) 316, 631, 1957, 2632
HindII GTYRAC 4 cut(s) 316, 631, 1957, 2632
HindIII AAGCTT 3 cut(s) 136, 359, 1067
HpaI GTTAAC 1 cut(s) 631
HpaII CCGG 1 cut(s) 2657
HphI GGTGA 6 cut(s) 55, 923, 1014, 1199, 2706, 2735
HpyAV CCTTC 9 cut(s) 178, 649, 893, 944, 1105, 1247, 2432, 2535, 2907
HpyCH4III ACNGT 5 cut(s) 646, 701, 998, 1763, 2458
HpyCH4IV ACGT 4 cut(s) 1349, 2324, 2624, 2646
HpyF10VI GCNNNNNNNGC 5 cut(s) 228, 1984, 2221, 2485, 2795
HpyF3I CTNAG 8 cut(s) 287, 391, 495, 575, 620, 1012, 2099, 2700
HpySE526I ACGT 4 cut(s) 1349, 2324, 2624, 2646
Hsp92II CATG 5 cut(s) 101, 272, 1203, 1470, 1659
HspAI GCGC 1 cut(s) 2918
Ksp22I TGATCA 1 cut(s) 541
KspAI GTTAAC 1 cut(s) 631
LguI GCTCTTC 2 cut(s) 1149, 2274
LmnI GCTCC 5 cut(s) 219, 1259, 1441, 1720, 2146
Lsp1109I GCAGC 7 cut(s) 46, 215, 306, 339, 2199, 2863, 2902
LweI GCATC 9 cut(s) 167, 677, 738, 1068, 1787, 1858, 2064, 2184, 2476
MaeI CTAG 5 cut(s) 692, 1151, 1523, 2018, 2606
MaeII ACGT 4 cut(s) 1349, 2324, 2624, 2646
MfeI CAATTG 4 cut(s) 223, 2005, 2130, 2483
MflI RGATCY 3 cut(s) 2077, 2416, 2563
MhlI GDGCHC 4 cut(s) 113, 351, 966, 1161
MlsI TGGCCA 3 cut(s) 267, 1098, 2003
MluNI TGGCCA 3 cut(s) 267, 1098, 2003
MlyI GAGTC 2 cut(s) 433, 1138
MmeI TCCRAC 7 cut(s) 497, 1148, 1845, 2168, 2474, 2523, 2794
Mox20I TGGCCA 3 cut(s) 267, 1098, 2003
Mph1103I ATGCAT 1 cut(s) 670
MscI TGGCCA 3 cut(s) 267, 1098, 2003
MslI CAYNNNNRTG 3 cut(s) 102, 2232, 2767
Msp20I TGGCCA 3 cut(s) 267, 1098, 2003
MspA1I CMGCKG 2 cut(s) 297, 574
MspCI CTTAAG 1 cut(s) 1960
MspI CCGG 1 cut(s) 2657
MspR9I CCNGG 5 cut(s) 584, 1051, 2657, 2658, 2724
MunI CAATTG 4 cut(s) 223, 2005, 2130, 2483
MvaI CCWGG 3 cut(s) 584, 1051, 2724
MvnI CGCG 2 cut(s) 13, 2138
MwoI GCNNNNNNNGC 5 cut(s) 228, 1984, 2221, 2485, 2795
NciI CCSGG 2 cut(s) 2657, 2658
NcoI CCATGG 1 cut(s) 1655
NlaIII CATG 5 cut(s) 101, 272, 1203, 1470, 1659
NlaIV GGNNCC 2 cut(s) 2142, 2158
NmeAIII GCCGAG 1 cut(s) 1993
NmuCI GTSAC 4 cut(s) 61, 788, 1272, 2712
NsiI ATGCAT 1 cut(s) 670
PciSI GCTCTTC 2 cut(s) 1149, 2274
Pfl23II CGTACG 1 cut(s) 2643
PkrI GCNGC 8 cut(s) 36, 230, 296, 329, 2140, 2214, 2853, 2892
PleI GAGTC 2 cut(s) 432, 1138
PpsI GAGTC 2 cut(s) 432, 1138
Ppu21I YACGTR 1 cut(s) 2647
PpuMI RGGWCCY 1 cut(s) 2157
Psp124BI GAGCTC 2 cut(s) 966, 1161
Psp5II RGGWCCY 1 cut(s) 2157
Psp6I CCWGG 3 cut(s) 582, 1049, 2722
PspEI GGTNACC 1 cut(s) 878
PspFI CCCAGC 1 cut(s) 2825
PspGI CCWGG 3 cut(s) 582, 1049, 2722
PspLI CGTACG 1 cut(s) 2643
PspN4I GGNNCC 2 cut(s) 2142, 2158
PspPI GGNCC 5 cut(s) 1090, 1549, 1909, 2109, 2157
PspPPI RGGWCCY 1 cut(s) 2157
PsrI GAACNNNNNNTAC 2 cut(s) 871, 903
PstI CTGCAG 2 cut(s) 36, 2791
PsuI RGATCY 3 cut(s) 2077, 2416, 2563
PvuII CAGCTG 2 cut(s) 297, 574
RsaI GTAC 7 cut(s) 342, 1930, 2011, 2209, 2387, 2462, 2645
RsaNI GTAC 7 cut(s) 341, 1929, 2010, 2208, 2386, 2461, 2644
RseI CAYNNNNRTG 3 cut(s) 102, 2232, 2767
SacI GAGCTC 2 cut(s) 966, 1161
SalI GTCGAC 2 cut(s) 1955, 2630
SapI GCTCTTC 2 cut(s) 1149, 2274
SatI GCNGC 8 cut(s) 35, 229, 295, 328, 2139, 2213, 2852, 2891
Sau96I GGNCC 5 cut(s) 1090, 1549, 1909, 2109, 2157
SbfI CCTGCAGG 1 cut(s) 2791
ScaI AGTACT 1 cut(s) 342
SchI GAGTC 2 cut(s) 433, 1138
ScrFI CCNGG 5 cut(s) 584, 1051, 2657, 2658, 2724
SdaI CCTGCAGG 1 cut(s) 2791
SduI GDGCHC 4 cut(s) 113, 351, 966, 1161
SfaNI GCATC 9 cut(s) 167, 677, 738, 1068, 1787, 1858, 2064, 2184, 2476
SfcI CTRYAG 3 cut(s) 32, 2532, 2787
SinI GGWCC 2 cut(s) 2109, 2157
SmaI CCCGGG 1 cut(s) 2658
SmiMI CAYNNNNRTG 3 cut(s) 102, 2232, 2767
SmlI CTYRAG 6 cut(s) 1361, 1576, 1792, 1831, 1960, 2422
SmoI CTYRAG 6 cut(s) 1361, 1576, 1792, 1831, 1960, 2422
SnaBI TACGTA 1 cut(s) 2647
Sse8387I CCTGCAGG 1 cut(s) 2791
SsiI CCGC 7 cut(s) 13, 688, 1891, 2107, 2138, 2268, 2667
SspMI CTAG 5 cut(s) 692, 1151, 1523, 2018, 2606
SstI GAGCTC 2 cut(s) 966, 1161
StyD4I CCNGG 5 cut(s) 582, 1049, 2655, 2656, 2722
StyI CCWWGG 4 cut(s) 819, 1093, 1268, 1655
TaaI ACNGT 5 cut(s) 646, 701, 998, 1763, 2458
TaiI ACGT 4 cut(s) 1352, 2327, 2627, 2649
TaqI TCGA 5 cut(s) 993, 1956, 2256, 2342, 2631
TaqII GACCGA 2 cut(s) 1493, 1942
TatI WGTACW 2 cut(s) 340, 2009
TauI GCSGC 1 cut(s) 2141
TscAI CASTG 5 cut(s) 544, 649, 1713, 1768, 2461
TseFI GTSAC 4 cut(s) 61, 788, 1272, 2712
TseI GCWGC 7 cut(s) 34, 228, 294, 327, 2212, 2851, 2890
Tsp45I GTSAC 4 cut(s) 61, 788, 1272, 2712
TspDTI ATGAA 8 cut(s) 543, 605, 972, 1277, 1427, 1455, 2292, 2517
TspGWI ACGGA 2 cut(s) 159, 1950
TspMI CCCGGG 1 cut(s) 2656
TspRI CASTG 5 cut(s) 544, 649, 1713, 1768, 2461
Vha464I CTTAAG 1 cut(s) 1960
VneI GTGCAC 1 cut(s) 347
VpaK11BI GGWCC 2 cut(s) 2109, 2157
XbaI TCTAGA 2 cut(s) 1522, 2605
XcmI CCANNNNNNNNNTGG 2 cut(s) 1643, 2070
XmaI CCCGGG 1 cut(s) 2656
XmiI GTMKAC 3 cut(s) 145, 1956, 2631
XspI CTAG 5 cut(s) 692, 1151, 1523, 2018, 2606
ZrmI AGTACT 1 cut(s) 342
Zsp2I ATGCAT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.