Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006878

Physical Location & Seq

Genomic Coordinates Forward (+)

8091949 .. 8096974

Gene Structure 5026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G112400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGGAGGGTAGGATGAAGAAGTACTCACAAGTGAGTCCTGAGAGGGCTAAAGTGTGGACTGAGAAGTCGCCGAAATACCATCAGAATCGCAAAGTCCCTGTGGTTTACTATCTCTCTCGAAATCGACAGCTTGAACACCCTCATTTCATGGAGGTTCCTGTAACCTCTCCTCAAGGGCTCTACCTCAGAGATGTGATTAATAGGCTTAATGCTCTGAGGGGCAGAGGCATGGCTTCCATGTATTCATGGTCTTCTAAGAGAAGCTATAAGAATGGGTTCGTTTGGCATGATCTCTCTGAAGATGATCTGATTCTTCCGGCCCATGGAAATGAATACGTCCTCAAAGGTTCTGAGCTCTTTGAAGAATCTAATTCAGATCGTTTTAGCCCCGTGGCAAATATAAAAATCCAGAACTTGAAACAACTACCAGAGCCAGCATCTTCTAGAAGCCAAGATGATTCTTCATCCTCTTCGAGTTTGAATGGAAAGGAAACAAAGCATTCTCAAGAAGATGAGCTCTCTCCTCCAGTTCAACGTCCTGAAGGCTCTTCCAGTGCGTCTCCTGAGTCTACAGTTGGAAAGAATTCTTCTTGGGGGGGTTCTCTGAGCTTGACAGAGTACAAGGTTTACAAGAGTGACGGTTTAGCTGATGCTTCTACGCAGACTGAAGAAAATGTGAACAAACCTAAAGCTCAAGAAACATGTACAAGGGGTGTTTCCACTGATGATGGGTCATTAGAACCTGATAGTAGTTATTACCAAAACAGAGTTCCATGTGAGAAAGAGAACTCTGAGATTTGCAGTGATTCAGTTTCTCCTCCTCCATCTTCCTCTAGTGCATCTTCATCGGGTGGGAAGACTGAAACTCTGGAATCACTTATTAGGGCTGATGCTAGTAAAATTAACAGTTTTAGAATTCTTGAAGAGGAAGACATTCGAATGACAAACTATCCAAGGGCCAAGGCTACTAATGTACTTATGCAACTCATCTCATGTGGGTCAATATCAGTGAAGGATCACCGTTTTGGTCTTATTCCAACATACAAGCCCAGGTTTTCCCATTCCAAATTTCACTCCCCATTATTCTCCACTAAGGTAATGTTGGGAGAGCTAGACTGCCTATCAGACAATCCAAGGCTAAGGGGTTCGAGATTGGAAGAGAAAGAATATTTTAGTGGGAGCTTGATTGAGACTAAAATGCTCAAGGACGAAGATGGATGCTCAACTCTAAAGCGATCATCTTCATACAATGCTGACAGGAGTTGTAGGAAGGCAGATTCAGTAGAGGACAAAGAGGACAAAGAGGATTCTACCTCAGGACGTTCAAAATGCATCCCAAGATCAATCAAGGCGTCACTCAATAAGCAACAACGAGGTGAATCTATGAGATCACCTATTTCTGACAAACCAAGGAACTCCTCAGATGGAGTTGATGGTGCACAAATCAATACCCACTGTGCATCCAATGGAGCTAGTAAAAGAATCACAGGGCCTTCATCTCTTAAAAAGCAATCAAACAGGTTAGATTCTTTTAGAGAAGAGAAGGAGAAGGTGATCAAAATCGAAGAAAGCTTGCTTCAGGAGCTCGGGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF966

Protein Analysis

532

Amino Acids

59.18

Weight (kDa)

8.19

Isoelectric Point (pI)

60.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28150 AT2G28150 AT2G28150
fragaria_vesca	FvH4_3g30680 FvH4_3g30680 FvH4_3g30680 FvH4_3g30680 FvH4_3g30680
malus_domestica	MD00G1165800.v1.1 MD03G1127100.v1.1 MD11G1147800.v1.1
prunus_persica	Prupe.6G112400_v2.0.a1 Prupe.6G112400_v2.0.a1
pyrus_communis	pycom11g12100
rosa_chinensis	RchiOBHm_Chr5g0056921
rosa_laevigata	RLG00000035137
rosa_multiflora	Rmu_sc0001460.1_g000002 Rmu_sc0004701.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023350
rosa_rugosa	Rorug05G0303700 Rorug05G0303800
rosa_samantha	Rh5AG373600 Rh5BG384500 Rh5CG407900 Rh5DG398000
rosa_wichuraiana	Rw5G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1594
AasI	GACNNNNNNGTC	1 cut(s)	64
AccI	GTMKAC	1 cut(s)	569
AclWI	GGATC	1 cut(s)	1023
AcsI	RAATTY	3 cut(s)	583, 915, 1067
AcuI	CTGAAG	4 cut(s)	318, 561, 687, 1562
AcyI	GRCGYC	1 cut(s)	1352
AfaI	GTAC	4 cut(s)	23, 620, 706, 975
AfiI	CCNNNNNNNGG	1 cut(s)	323
AflIII	ACRYGT	1 cut(s)	701
AgsI	TTSAA	7 cut(s)	134, 362, 418, 481, 533, 923, 1326
AjnI	CCWGG	1 cut(s)	1049
AjuI	GAANNNNNNNTTGG	2 cut(s)	753, 785
Alw21I	GWGCWC	4 cut(s)	357, 519, 1441, 1587
Alw26I	GTCTC	2 cut(s)	564, 1184
Alw44I	GTGCAC	1 cut(s)	1437
AlwI	GGATC	1 cut(s)	1023
Ama87I	CYCGRG	1 cut(s)	1586
AoxI	GGCC	3 cut(s)	318, 957, 1490
ApaLI	GTGCAC	1 cut(s)	1437
ApoI	RAATTY	3 cut(s)	583, 915, 1067
AseI	ATTAAT	1 cut(s)	198
Asp700I	GAANNNNTTC	3 cut(s)	275, 583, 933
AspS9I	GGNCC	3 cut(s)	319, 957, 1490
AsuHPI	GGTGA	4 cut(s)	1010, 1383, 1388, 1564
AsuII	TTCGAA	1 cut(s)	937
AvaI	CYCGRG	1 cut(s)	1586
AxyI	CCTNAGG	1 cut(s)	1315
BaeGI	GKGCMC	1 cut(s)	1441
BanII	GRGCYC	4 cut(s)	180, 357, 519, 1587
BbsI	GAAGAC	3 cut(s)	243, 863, 936
Bbv12I	GWGCWC	4 cut(s)	357, 519, 1441, 1587
BccI	CCATC	6 cut(s)	87, 722, 832, 1208, 1418, 1427
BcgI	CGANNNNNNTGC	2 cut(s)	828, 862
BciT130I	CCWGG	1 cut(s)	1051
BclI	TGATCA	1 cut(s)	1554
BcoDI	GTCTC	2 cut(s)	564, 1184
BfaI	CTAG	5 cut(s)	444, 834, 894, 1112, 1473
BfmI	CTRYAG	1 cut(s)	570
BmcAI	AGTACT	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	1051
BmeT110I	CYCGRG	1 cut(s)	1586
BmgT120I	GGNCC	3 cut(s)	319, 957, 1490
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	1051
BmsI	GCATC	7 cut(s)	446, 640, 848, 880, 1208, 1341, 1469
BpiI	GAAGAC	3 cut(s)	243, 863, 936
BpmI	CTGGAG	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	1139
Bpu14I	TTCGAA	1 cut(s)	937
BpuEI	CTTGAG	4 cut(s)	156, 489, 678, 1187
BsaBI	GATNNNNATC	1 cut(s)	1559
BsaHI	GRCGYC	1 cut(s)	1352
BsaJI	CCNNGG	7 cut(s)	322, 390, 953, 960, 1049, 1133, 1409
BsaXI	ACNNNNNCTCC	1 cut(s)	1574
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse1I	ACTGG	2 cut(s)	527, 552
Bse21I	CCTNAGG	1 cut(s)	1315
Bse8I	GATNNNNATC	1 cut(s)	1559
BseBI	CCWGG	1 cut(s)	1051
BseDI	CCNNGG	7 cut(s)	322, 390, 953, 960, 1049, 1133, 1409
BseGI	GGATG	5 cut(s)	18, 464, 1223, 1332, 1460
BseJI	GATNNNNATC	1 cut(s)	1559
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseNI	ACTGG	2 cut(s)	527, 552
BseRI	GAGGAG	5 cut(s)	159, 513, 807, 810, 1408
BseSI	GKGCMC	1 cut(s)	1441
BshFI	GGCC	3 cut(s)	320, 959, 1492
BsiHKAI	GWGCWC	4 cut(s)	357, 519, 1441, 1587
BsiHKCI	CYCGRG	1 cut(s)	1586
BsiSI	CCGG	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	2 cut(s)	564, 1184
BsmBI	CGTCTC	1 cut(s)	564
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	3 cut(s)	320, 959, 1492
BsoBI	CYCGRG	1 cut(s)	1586
Bsp119I	TTCGAA	1 cut(s)	937
Bsp1286I	GDGCHC	5 cut(s)	180, 357, 519, 1441, 1587
Bsp1407I	TGTACA	1 cut(s)	704
Bsp143I	GATC	8 cut(s)	289, 304, 376, 1015, 1235, 1340, 1388, 1554
Bsp19I	CCATGG	1 cut(s)	322
BspANI	GGCC	3 cut(s)	320, 959, 1492
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	1023
BspQI	GCTCTTC	1 cut(s)	553
BspT104I	TTCGAA	1 cut(s)	937
BsrGI	TGTACA	1 cut(s)	704
BsrI	ACTGG	2 cut(s)	527, 552
BssECI	CCNNGG	7 cut(s)	322, 390, 953, 960, 1049, 1133, 1409
BssMI	GATC	8 cut(s)	289, 304, 376, 1015, 1235, 1340, 1388, 1554
BssNI	GRCGYC	1 cut(s)	1352
BssT1I	CCWWGG	5 cut(s)	322, 953, 960, 1133, 1409
Bst2UI	CCWGG	1 cut(s)	1051
Bst4CI	ACNGT	5 cut(s)	574, 641, 908, 1022, 1457
Bst6I	CTCTTC	5 cut(s)	475, 553, 918, 1152, 1533
BstACI	GRCGYC	1 cut(s)	1352
BstAUI	TGTACA	1 cut(s)	704
BstBI	TTCGAA	1 cut(s)	937
BstC8I	GCNNGC	2 cut(s)	435, 1574
BstDSI	CCRYGG	2 cut(s)	322, 390
BstF5I	GGATG	5 cut(s)	18, 464, 1223, 1332, 1460
BstKTI	GATC	8 cut(s)	292, 307, 379, 1018, 1238, 1343, 1391, 1557
BstMAI	GTCTC	2 cut(s)	564, 1184
BstMBI	GATC	8 cut(s)	289, 304, 376, 1015, 1235, 1340, 1388, 1554
BstMWI	GCNNNNNNNGC	1 cut(s)	1582
BstNI	CCWGG	1 cut(s)	1051
BstNSI	RCATGY	1 cut(s)	705
BstSCI	CCNGG	1 cut(s)	1049
BstSFI	CTRYAG	1 cut(s)	570
BstSLI	GKGCMC	1 cut(s)	1441
BstV2I	GAAGAC	3 cut(s)	243, 863, 936
Bsu36I	CCTNAGG	1 cut(s)	1315
BsuRI	GGCC	3 cut(s)	320, 959, 1492
BtgI	CCRYGG	2 cut(s)	322, 390
BtsCI	GGATG	5 cut(s)	18, 464, 1223, 1332, 1460
BtsI	GCAGTG	1 cut(s)	808
BtsIMutI	CAGTG	5 cut(s)	559, 720, 808, 1014, 1453
Cac8I	GCNNGC	2 cut(s)	435, 1574
Cfr13I	GGNCC	3 cut(s)	319, 957, 1490
CseI	GACGC	2 cut(s)	546, 1341
Csp6I	GTAC	4 cut(s)	22, 619, 705, 974
CviAII	CATG	9 cut(s)	148, 229, 238, 246, 287, 323, 702, 774, 993
CviQI	GTAC	4 cut(s)	22, 619, 705, 974
DpnI	GATC	8 cut(s)	291, 306, 378, 1017, 1237, 1342, 1390, 1556
DpnII	GATC	8 cut(s)	289, 304, 376, 1015, 1235, 1340, 1388, 1554
DrdI	GACNNNNNNGTC	1 cut(s)	64
DseDI	GACNNNNNNGTC	1 cut(s)	64
Eam1104I	CTCTTC	5 cut(s)	475, 553, 918, 1152, 1533
EarI	CTCTTC	5 cut(s)	475, 553, 918, 1152, 1533
Ecl136II	GAGCTC	3 cut(s)	355, 517, 1585
Eco130I	CCWWGG	5 cut(s)	322, 953, 960, 1133, 1409
Eco24I	GRGCYC	4 cut(s)	180, 357, 519, 1587
Eco53kI	GAGCTC	3 cut(s)	355, 517, 1585
Eco57I	CTGAAG	4 cut(s)	318, 561, 687, 1562
Eco81I	CCTNAGG	1 cut(s)	1315
Eco88I	CYCGRG	1 cut(s)	1586
EcoICRI	GAGCTC	3 cut(s)	355, 517, 1585
EcoO109I	RGGNCCY	1 cut(s)	1490
EcoRI	GAATTC	2 cut(s)	583, 915
EcoRII	CCWGG	1 cut(s)	1049
EcoT14I	CCWWGG	5 cut(s)	322, 953, 960, 1133, 1409
EcoT22I	ATGCAT	1 cut(s)	1334
EcoT38I	GRGCYC	4 cut(s)	180, 357, 519, 1587
ErhI	CCWWGG	5 cut(s)	322, 953, 960, 1133, 1409
Esp3I	CGTCTC	1 cut(s)	564
FaeI	CATG	9 cut(s)	151, 232, 241, 249, 290, 326, 705, 777, 996
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	9 cut(s)	147, 228, 237, 245, 286, 322, 701, 773, 992
FbaI	TGATCA	1 cut(s)	1554
FblI	GTMKAC	1 cut(s)	569
FokI	GGATG	5 cut(s)	25, 451, 1230, 1319, 1447
FriOI	GRGCYC	4 cut(s)	180, 357, 519, 1587
FspBI	CTAG	5 cut(s)	444, 834, 894, 1112, 1473
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	3 cut(s)	320, 959, 1492
HapII	CCGG	1 cut(s)	317
HgaI	GACGC	2 cut(s)	546, 1341
Hin1I	GRCGYC	1 cut(s)	1352
Hin1II	CATG	9 cut(s)	151, 232, 241, 249, 290, 326, 705, 777, 996
HindIII	AAGCTT	1 cut(s)	1570
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	4 cut(s)	1010, 1383, 1388, 1564
Hpy166II	GTNNAC	6 cut(s)	57, 106, 570, 628, 679, 1439
Hpy8I	GTNNAC	6 cut(s)	57, 106, 570, 628, 679, 1439
HpyAV	CCTTC	6 cut(s)	536, 1006, 1264, 1503, 1537, 1543
HpyCH4III	ACNGT	5 cut(s)	574, 641, 908, 1022, 1457
HpyCH4IV	ACGT	3 cut(s)	336, 535, 1321
HpyCH4V	TGCA	6 cut(s)	801, 839, 982, 1332, 1439, 1460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1582
HpySE526I	ACGT	3 cut(s)	336, 535, 1321
Hsp92I	GRCGYC	1 cut(s)	1352
Hsp92II	CATG	9 cut(s)	151, 232, 241, 249, 290, 326, 705, 777, 996
Ksp22I	TGATCA	1 cut(s)	1554
Kzo9I	GATC	8 cut(s)	289, 304, 376, 1015, 1235, 1340, 1388, 1554
LguI	GCTCTTC	1 cut(s)	553
LmnI	GCTCC	3 cut(s)	1179, 1469, 1582
LweI	GCATC	7 cut(s)	446, 640, 848, 880, 1208, 1341, 1469
MaeI	CTAG	5 cut(s)	444, 834, 894, 1112, 1473
MaeII	ACGT	3 cut(s)	336, 535, 1321
MaeIII	GTNAC	3 cut(s)	160, 635, 1353
MalI	GATC	8 cut(s)	291, 306, 378, 1017, 1237, 1342, 1390, 1556
MboI	GATC	8 cut(s)	289, 304, 376, 1015, 1235, 1340, 1388, 1554
MhlI	GDGCHC	5 cut(s)	180, 357, 519, 1441, 1587
MluCI	AATT	5 cut(s)	370, 583, 900, 915, 1067
MlyI	GAGTC	2 cut(s)	43, 575
MmeI	TCCRAC	2 cut(s)	556, 1061
Mph1103I	ATGCAT	1 cut(s)	1334
MroXI	GAANNNNTTC	3 cut(s)	275, 583, 933
MseI	TTAA	4 cut(s)	198, 207, 903, 1503
MslI	CAYNNNNRTG	2 cut(s)	327, 938
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	1051
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	1051
MwoI	GCNNNNNNNGC	1 cut(s)	1582
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	8 cut(s)	289, 304, 376, 1015, 1235, 1340, 1388, 1554
NlaIII	CATG	9 cut(s)	151, 232, 241, 249, 290, 326, 705, 777, 996
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	2 cut(s)	635, 1353
NsiI	ATGCAT	1 cut(s)	1334
NspI	RCATGY	1 cut(s)	705
NspV	TTCGAA	1 cut(s)	937
PciI	ACATGT	1 cut(s)	701
PciSI	GCTCTTC	1 cut(s)	553
PctI	GAATGC	1 cut(s)	499
PdmI	GAANNNNTTC	3 cut(s)	275, 583, 933
PleI	GAGTC	2 cut(s)	42, 574
PpsI	GAGTC	2 cut(s)	42, 574
PscI	ACATGT	1 cut(s)	701
PshBI	ATTAAT	1 cut(s)	198
PsiI	TTATAA	1 cut(s)	1594
Psp124BI	GAGCTC	3 cut(s)	357, 519, 1587
Psp6I	CCWGG	1 cut(s)	1049
PspGI	CCWGG	1 cut(s)	1049
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	3 cut(s)	319, 957, 1490
RsaI	GTAC	4 cut(s)	23, 620, 706, 975
RsaNI	GTAC	4 cut(s)	22, 619, 705, 974
RseI	CAYNNNNRTG	2 cut(s)	327, 938
SacI	GAGCTC	3 cut(s)	357, 519, 1587
SapI	GCTCTTC	1 cut(s)	553
SaqAI	TTAA	4 cut(s)	198, 207, 903, 1503
Sau3AI	GATC	8 cut(s)	289, 304, 376, 1015, 1235, 1340, 1388, 1554
Sau96I	GGNCC	3 cut(s)	319, 957, 1490
ScaI	AGTACT	1 cut(s)	23
SchI	GAGTC	2 cut(s)	43, 575
ScrFI	CCNGG	1 cut(s)	1051
SduI	GDGCHC	5 cut(s)	180, 357, 519, 1441, 1587
SfaNI	GCATC	7 cut(s)	446, 640, 848, 880, 1208, 1341, 1469
SfcI	CTRYAG	1 cut(s)	570
SfuI	TTCGAA	1 cut(s)	937
SmiMI	CAYNNNNRTG	2 cut(s)	327, 938
SmlI	CTYRAG	4 cut(s)	171, 504, 693, 1202
SmoI	CTYRAG	4 cut(s)	171, 504, 693, 1202
Sse9I	AATT	5 cut(s)	370, 583, 900, 915, 1067
SspI	AATATT	1 cut(s)	1169
SspMI	CTAG	5 cut(s)	444, 834, 894, 1112, 1473
SstI	GAGCTC	3 cut(s)	357, 519, 1587
StyD4I	CCNGG	1 cut(s)	1049
StyI	CCWWGG	5 cut(s)	322, 953, 960, 1133, 1409
TaaI	ACNGT	5 cut(s)	574, 641, 908, 1022, 1457
TaiI	ACGT	3 cut(s)	339, 538, 1324
TaqI	TCGA	6 cut(s)	118, 124, 473, 937, 1148, 1563
TasI	AATT	5 cut(s)	370, 583, 900, 915, 1067
TatI	WGTACW	4 cut(s)	21, 618, 704, 973
Tru1I	TTAA	4 cut(s)	198, 207, 903, 1503
Tru9I	TTAA	4 cut(s)	198, 207, 903, 1503
TscAI	CASTG	5 cut(s)	559, 727, 808, 1014, 1460
TseFI	GTSAC	2 cut(s)	635, 1353
Tsp45I	GTSAC	2 cut(s)	635, 1353
TspDTI	ATGAA	8 cut(s)	29, 136, 234, 345, 453, 834, 1233, 1485
TspRI	CASTG	5 cut(s)	559, 727, 808, 1014, 1460
VneI	GTGCAC	1 cut(s)	1437
VspI	ATTAAT	1 cut(s)	198
XapI	RAATTY	3 cut(s)	583, 915, 1067
XbaI	TCTAGA	1 cut(s)	443
XceI	RCATGY	1 cut(s)	705
XmiI	GTMKAC	1 cut(s)	569
XmnI	GAANNNNTTC	3 cut(s)	275, 583, 933
XspI	CTAG	5 cut(s)	444, 834, 894, 1112, 1473
ZrmI	AGTACT	1 cut(s)	23
Zsp2I	ATGCAT	1 cut(s)	1334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.