Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004701.1

Orthogroup ID

OG0006878

Physical Location & Seq

Genomic Coordinates Reverse (-)

10805 .. 12212

Gene Structure 1408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004701.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atggagggtaggatgaaaaagtatagacaagtgagtcctgagagggctaaagtgtggaccgagaagtcgccgaaataccaccagaatcggaaagttccggtggtttattacctctgccggaaccgacagcttgaacaccctcatttcatggaggttactgtaagctcttctcaaggtctctacctcagagatgtgattaataagcttaatgctctgaggggcagagggatagcatccatgtattcatggtcttctaagagaagctataagaatgggtatgtttggcatgatctcagtgacgatgatgtgattcttccagcccacggagacgagtacgtcctcaaaggttctgagatctttgatgaatccaattcagatcgattcagtccgatagcaaatgtcaaaatccagaacttgaaacaattaccggaaccaacatcttctagaagccaaggtgattcttcatcgtcttccagtttgaatggaaaggagacaaagcagtcccatgaagatgagatctctcctccagttgaacgaccaggaggctcttccagtgtgtcttcagagtctggaaagaattcttcttggggtggttctctgagcttgacagagtacaaggtttacaagagtgatggtttagctgatgcttctacacagactgaagaaaatgtgaacaaacttaaagctctagaaacatgtacaaggggtgtttccacagatgatgggtcactagaacctgattgcagttattaccaagaccgaattccatgtttgaaagagaattctgagatttgcagtgattctgtttcccctcctccatcttcctcaagtgcatcttcatcgggtgggaagactgaaactttagaatcacttattagggctgatgttagtaaaattaacagttttagaattcttgaagaggaagagcttcgaatgccaaacaatgcaaggctcaaggctagtaatgtacttatgcaactcatttcatgtgggtcaatatcagtgaaggtagaaagaaacagaaactggatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF966

Protein Analysis

344

Amino Acids

38.32

Weight (kDa)

6.63

Isoelectric Point (pI)

57.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28150 AT2G28150 AT2G28150
fragaria_vesca	FvH4_3g30680 FvH4_3g30680 FvH4_3g30680 FvH4_3g30680 FvH4_3g30680
malus_domestica	MD00G1165800.v1.1 MD03G1127100.v1.1 MD11G1147800.v1.1
prunus_persica	Prupe.6G112400_v2.0.a1 Prupe.6G112400_v2.0.a1
pyrus_communis	pycom11g12100
rosa_chinensis	RchiOBHm_Chr5g0056921
rosa_laevigata	RLG00000035137
rosa_multiflora	Rmu_sc0001460.1_g000002 Rmu_sc0004701.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023350
rosa_rugosa	Rorug05G0303700 Rorug05G0303800
rosa_samantha	Rh5AG373600 Rh5BG384500 Rh5CG407900 Rh5DG398000
rosa_wichuraiana	Rw5G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	4 cut(s)	33, 64, 335, 499
AcsI	RAATTY	4 cut(s)	577, 762, 781, 909
AcuI	CTGAAG	2 cut(s)	546, 681
AfaI	GTAC	4 cut(s)	335, 614, 700, 969
AfiI	CCNNNNNNNGG	1 cut(s)	323
AflIII	ACRYGT	1 cut(s)	695
AgsI	TTSAA	6 cut(s)	134, 418, 481, 533, 775, 917
AjnI	CCWGG	1 cut(s)	538
AjuI	GAANNNNNNNTTGG	2 cut(s)	747, 779
AluBI	AGCT	8 cut(s)	130, 165, 205, 264, 603, 641, 686, 928
AluI	AGCT	8 cut(s)	130, 165, 205, 264, 603, 641, 686, 928
Alw26I	GTCTC	3 cut(s)	182, 321, 485
AlwNI	CAGNNNCTG	2 cut(s)	569, 1026
ApoI	RAATTY	4 cut(s)	577, 762, 781, 909
AseI	ATTAAT	1 cut(s)	198
Asp700I	GAANNNNTTC	2 cut(s)	577, 927
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	467
AsuII	TTCGAA	1 cut(s)	931
AvaII	GGWCC	1 cut(s)	57
BbsI	GAAGAC	4 cut(s)	243, 462, 552, 857
BccI	CCATC	3 cut(s)	626, 716, 826
BcgI	CGANNNNNNTGC	2 cut(s)	822, 856
BciT130I	CCWGG	1 cut(s)	540
BcoDI	GTCTC	3 cut(s)	182, 321, 485
BfaI	CTAG	4 cut(s)	444, 689, 731, 960
BglII	AGATCT	2 cut(s)	354, 516
Bme1390I	CCNGG	1 cut(s)	540
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	122, 432
BmrFI	CCNGG	1 cut(s)	540
BmsI	GCATC	3 cut(s)	242, 634, 842
BpiI	GAAGAC	4 cut(s)	243, 462, 552, 857
BpmI	CTGGAG	1 cut(s)	510
Bpu14I	TTCGAA	1 cut(s)	931
BpuEI	CTTGAG	3 cut(s)	156, 811, 938
Bsa29I	ATCGAT	1 cut(s)	379
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	322, 451
BsaWI	WCCGGW	2 cut(s)	97, 427
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse1I	ACTGG	4 cut(s)	474, 527, 552, 1031
BseBI	CCWGG	1 cut(s)	540
BseCI	ATCGAT	1 cut(s)	379
BseDI	CCNNGG	2 cut(s)	322, 451
BseGI	GGATG	2 cut(s)	18, 233
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	7 cut(s)	30, 199, 206, 307, 342, 590, 777
BseNI	ACTGG	4 cut(s)	474, 527, 552, 1031
BseRI	GAGGAG	2 cut(s)	513, 804
BshVI	ATCGAT	1 cut(s)	379
BsiSI	CCGG	3 cut(s)	98, 118, 428
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	3 cut(s)	182, 321, 485
BsmBI	CGTCTC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	487
BsmI	GAATGC	1 cut(s)	939
Bso31I	GGTCTC	1 cut(s)	182
Bsp119I	TTCGAA	1 cut(s)	931
Bsp1407I	TGTACA	1 cut(s)	698
Bsp143I	GATC	4 cut(s)	289, 354, 376, 516
BspCNI	CTCAG	7 cut(s)	31, 198, 207, 306, 343, 591, 778
BspDI	ATCGAT	1 cut(s)	379
BspLI	GGNNCC	2 cut(s)	122, 432
BspQI	GCTCTTC	3 cut(s)	172, 553, 918
BspT104I	TTCGAA	1 cut(s)	931
BspTNI	GGTCTC	1 cut(s)	182
BsrGI	TGTACA	1 cut(s)	698
BsrI	ACTGG	4 cut(s)	474, 527, 552, 1031
BssECI	CCNNGG	2 cut(s)	322, 451
BssMI	GATC	4 cut(s)	289, 354, 376, 516
BssT1I	CCWWGG	1 cut(s)	451
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	2 cut(s)	160, 902
Bst6I	CTCTTC	4 cut(s)	172, 553, 912, 918
BstAUI	TGTACA	1 cut(s)	698
BstBI	TTCGAA	1 cut(s)	931
BstDEI	CTNAG	8 cut(s)	39, 185, 215, 255, 293, 351, 599, 786
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	2 cut(s)	18, 233
BstKTI	GATC	4 cut(s)	292, 357, 379, 519
BstMAI	GTCTC	3 cut(s)	182, 321, 485
BstMBI	GATC	4 cut(s)	289, 354, 376, 516
BstMWI	GCNNNNNNNGC	1 cut(s)	934
BstNI	CCWGG	1 cut(s)	540
BstNSI	RCATGY	1 cut(s)	699
BstSCI	CCNGG	1 cut(s)	538
BstV2I	GAAGAC	4 cut(s)	243, 462, 552, 857
BstX2I	RGATCY	2 cut(s)	354, 516
BstYI	RGATCY	2 cut(s)	354, 516
Bsu15I	ATCGAT	1 cut(s)	379
BsuTUI	ATCGAT	1 cut(s)	379
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	18, 233
BtsI	GCAGTG	1 cut(s)	802
BtsIMutI	CAGTG	4 cut(s)	301, 559, 802, 1008
CaiI	CAGNNNCTG	2 cut(s)	569, 1026
Cfr13I	GGNCC	1 cut(s)	57
ClaI	ATCGAT	1 cut(s)	379
Csp6I	GTAC	4 cut(s)	334, 613, 699, 968
CviAII	CATG	8 cut(s)	148, 238, 246, 287, 506, 696, 768, 987
CviQI	GTAC	4 cut(s)	334, 613, 699, 968
DdeI	CTNAG	8 cut(s)	39, 185, 215, 255, 293, 351, 599, 786
DpnI	GATC	4 cut(s)	291, 356, 378, 518
DpnII	GATC	4 cut(s)	289, 354, 376, 516
DrdI	GACNNNNNNGTC	4 cut(s)	33, 64, 335, 499
DseDI	GACNNNNNNGTC	4 cut(s)	33, 64, 335, 499
Eam1104I	CTCTTC	4 cut(s)	172, 553, 912, 918
EarI	CTCTTC	4 cut(s)	172, 553, 912, 918
Eco130I	CCWWGG	1 cut(s)	451
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	57
Eco57I	CTGAAG	2 cut(s)	546, 681
EcoRI	GAATTC	4 cut(s)	577, 762, 781, 909
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	451
Esp3I	CGTCTC	1 cut(s)	321
FaeI	CATG	8 cut(s)	151, 241, 249, 290, 509, 699, 771, 990
FalI	AAGNNNNNCTT	2 cut(s)	820, 852
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	8 cut(s)	147, 237, 245, 286, 505, 695, 767, 986
FokI	GGATG	2 cut(s)	25, 220
FspBI	CTAG	4 cut(s)	444, 689, 731, 960
GsuI	CTGGAG	1 cut(s)	510
HapII	CCGG	3 cut(s)	98, 118, 428
Hin1II	CATG	8 cut(s)	151, 241, 249, 290, 509, 699, 771, 990
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	9 cut(s)	34, 85, 310, 365, 381, 458, 566, 800, 866
HpaII	CCGG	3 cut(s)	98, 118, 428
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	3 cut(s)	57, 622, 673
Hpy188I	TCNGA	9 cut(s)	90, 188, 216, 352, 376, 390, 565, 600, 787
Hpy188III	TCNNGA	6 cut(s)	38, 409, 444, 570, 689, 914
Hpy8I	GTNNAC	3 cut(s)	57, 622, 673
HpyAV	CCTTC	1 cut(s)	1000
HpyCH4III	ACNGT	2 cut(s)	160, 902
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	5 cut(s)	744, 795, 833, 947, 976
HpyF10VI	GCNNNNNNNGC	1 cut(s)	934
HpyF3I	CTNAG	8 cut(s)	39, 185, 215, 255, 293, 351, 599, 786
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	8 cut(s)	151, 241, 249, 290, 509, 699, 771, 990
Kzo9I	GATC	4 cut(s)	289, 354, 376, 516
LguI	GCTCTTC	3 cut(s)	172, 553, 918
LweI	GCATC	3 cut(s)	242, 634, 842
MaeI	CTAG	4 cut(s)	444, 689, 731, 960
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	3 cut(s)	154, 296, 726
MalI	GATC	4 cut(s)	291, 356, 378, 518
MboI	GATC	4 cut(s)	289, 354, 376, 516
MflI	RGATCY	2 cut(s)	354, 516
MluCI	AATT	7 cut(s)	370, 422, 577, 762, 781, 894, 909
MlyI	GAGTC	2 cut(s)	43, 575
MroXI	GAANNNNTTC	2 cut(s)	577, 927
MseI	TTAA	4 cut(s)	198, 207, 681, 897
MslI	CAYNNNNRTG	1 cut(s)	510
MspI	CCGG	3 cut(s)	98, 118, 428
MspR9I	CCNGG	1 cut(s)	540
Mva1269I	GAATGC	1 cut(s)	939
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	1 cut(s)	934
NdeII	GATC	4 cut(s)	289, 354, 376, 516
NlaIII	CATG	8 cut(s)	151, 241, 249, 290, 509, 699, 771, 990
NlaIV	GGNNCC	2 cut(s)	122, 432
NmuCI	GTSAC	2 cut(s)	296, 726
NspI	RCATGY	1 cut(s)	699
NspV	TTCGAA	1 cut(s)	931
PciI	ACATGT	1 cut(s)	695
PciSI	GCTCTTC	3 cut(s)	172, 553, 918
PctI	GAATGC	1 cut(s)	939
PdmI	GAANNNNTTC	2 cut(s)	577, 927
PfeI	GAWTC	7 cut(s)	85, 310, 365, 381, 458, 800, 866
PleI	GAGTC	2 cut(s)	42, 574
PpsI	GAGTC	2 cut(s)	42, 574
PscI	ACATGT	1 cut(s)	695
PshBI	ATTAAT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	2 cut(s)	122, 432
PspPI	GGNCC	1 cut(s)	57
PstNI	CAGNNNCTG	2 cut(s)	569, 1026
PsuI	RGATCY	2 cut(s)	354, 516
RsaI	GTAC	4 cut(s)	335, 614, 700, 969
RsaNI	GTAC	4 cut(s)	334, 613, 699, 968
RseI	CAYNNNNRTG	1 cut(s)	510
SapI	GCTCTTC	3 cut(s)	172, 553, 918
SaqAI	TTAA	4 cut(s)	198, 207, 681, 897
Sau3AI	GATC	4 cut(s)	289, 354, 376, 516
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	2 cut(s)	43, 575
ScrFI	CCNGG	1 cut(s)	540
SfaNI	GCATC	3 cut(s)	242, 634, 842
SfuI	TTCGAA	1 cut(s)	931
SinI	GGWCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	3 cut(s)	171, 826, 953
SmoI	CTYRAG	3 cut(s)	171, 826, 953
Sse9I	AATT	7 cut(s)	370, 422, 577, 762, 781, 894, 909
SspMI	CTAG	4 cut(s)	444, 689, 731, 960
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	1 cut(s)	451
TaaI	ACNGT	2 cut(s)	160, 902
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	2 cut(s)	379, 931
TaqII	GACCGA	2 cut(s)	74, 774
TasI	AATT	7 cut(s)	370, 422, 577, 762, 781, 894, 909
TatI	WGTACW	3 cut(s)	612, 698, 967
TfiI	GAWTC	7 cut(s)	85, 310, 365, 381, 458, 800, 866
Tru1I	TTAA	4 cut(s)	198, 207, 681, 897
Tru9I	TTAA	4 cut(s)	198, 207, 681, 897
TscAI	CASTG	4 cut(s)	301, 559, 802, 1008
TseFI	GTSAC	2 cut(s)	296, 726
Tsp45I	GTSAC	2 cut(s)	296, 726
TspDTI	ATGAA	8 cut(s)	29, 136, 234, 378, 453, 522, 828, 975
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	4 cut(s)	301, 559, 802, 1008
VpaK11BI	GGWCC	1 cut(s)	57
VspI	ATTAAT	1 cut(s)	198
XapI	RAATTY	4 cut(s)	577, 762, 781, 909
XbaI	TCTAGA	2 cut(s)	443, 688
XceI	RCATGY	1 cut(s)	699
XmnI	GAANNNNTTC	2 cut(s)	577, 927
XspI	CTAG	4 cut(s)	444, 689, 731, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.