Protein UPSTREAM OF FLC isoform X1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G28150 AT2G28150 AT2G28150 |
| fragaria_vesca | FvH4_3g30680 FvH4_3g30680 FvH4_3g30680 FvH4_3g30680 FvH4_3g30680 |
| malus_domestica | MD00G1165800.v1.1 MD03G1127100.v1.1 MD11G1147800.v1.1 |
| prunus_persica | Prupe.6G112400_v2.0.a1 Prupe.6G112400_v2.0.a1 |
| pyrus_communis | pycom11g12100 |
| rosa_chinensis | RchiOBHm_Chr5g0056921 |
| rosa_laevigata | RLG00000035137 |
| rosa_multiflora | Rmu_sc0001460.1_g000002 Rmu_sc0004701.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00023350 |
| rosa_rugosa | Rorug05G0303700 Rorug05G0303800 |
| rosa_samantha | Rh5AG373600 Rh5BG384500 Rh5CG407900 Rh5DG398000 |
| rosa_wichuraiana | Rw5G035140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1591 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 64 |
| Acc36I | ACCTGC | 1 cut(s) | 442 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 148 |
| AccI | GTMKAC | 2 cut(s) | 569, 1301 |
| AccIII | TCCGGA | 1 cut(s) | 37 |
| AciI | CCGC | 2 cut(s) | 88, 597 |
| AclWI | GGATC | 1 cut(s) | 1023 |
| AcsI | RAATTY | 2 cut(s) | 370, 583 |
| AcuI | CTGAAG | 3 cut(s) | 318, 687, 1559 |
| AdeI | CACNNNGTG | 1 cut(s) | 1367 |
| AfaI | GTAC | 8 cut(s) | 23, 77, 335, 339, 620, 706, 936, 975 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 148, 323, 822, 882, 883 |
| AflIII | ACRYGT | 1 cut(s) | 701 |
| AgsI | TTSAA | 7 cut(s) | 134, 362, 418, 481, 533, 923, 1002 |
| Alw21I | GWGCWC | 3 cut(s) | 519, 1432, 1584 |
| Alw26I | GTCTC | 2 cut(s) | 542, 1184 |
| Alw44I | GTGCAC | 1 cut(s) | 1428 |
| AlwI | GGATC | 1 cut(s) | 1023 |
| Ama87I | CYCGRG | 1 cut(s) | 1583 |
| Aor13HI | TCCGGA | 1 cut(s) | 37 |
| AoxI | GGCC | 2 cut(s) | 318, 1047 |
| ApaLI | GTGCAC | 1 cut(s) | 1428 |
| ApeKI | GCWGC | 2 cut(s) | 127, 1223 |
| ApoI | RAATTY | 2 cut(s) | 370, 583 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 850, 882 |
| AseI | ATTAAT | 1 cut(s) | 198 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 583 |
| AspS9I | GGNCC | 2 cut(s) | 319, 1048 |
| AsuHPI | GGTGA | 1 cut(s) | 1561 |
| AsuII | TTCGAA | 1 cut(s) | 1316 |
| AvaI | CYCGRG | 1 cut(s) | 1583 |
| BaeGI | GKGCMC | 1 cut(s) | 1432 |
| BanII | GRGCYC | 3 cut(s) | 180, 519, 1584 |
| BauI | CACGAG | 1 cut(s) | 991 |
| BbsI | GAAGAC | 4 cut(s) | 243, 863, 936, 1233 |
| Bbv12I | GWGCWC | 3 cut(s) | 519, 1432, 1584 |
| BbvI | GCAGC | 2 cut(s) | 139, 1235 |
| BccI | CCATC | 5 cut(s) | 632, 722, 847, 1208, 1418 |
| BciVI | GTATCC | 1 cut(s) | 1462 |
| BclI | TGATCA | 1 cut(s) | 1551 |
| BcoDI | GTCTC | 2 cut(s) | 542, 1184 |
| BfaI | CTAG | 1 cut(s) | 444 |
| BfuAI | ACCTGC | 1 cut(s) | 442 |
| BfuI | GTATCC | 1 cut(s) | 1462 |
| BisI | GCNGC | 2 cut(s) | 128, 1224 |
| BlsI | GCNGC | 2 cut(s) | 129, 1225 |
| BmeT110I | CYCGRG | 1 cut(s) | 1583 |
| BmgT120I | GGNCC | 2 cut(s) | 319, 1048 |
| BmiI | GGNNCC | 3 cut(s) | 156, 432, 741 |
| BmrI | ACTGGG | 1 cut(s) | 1045 |
| BmsI | GCATC | 6 cut(s) | 446, 566, 640, 701, 930, 1366 |
| BmuI | ACTGGG | 1 cut(s) | 1045 |
| BpiI | GAAGAC | 4 cut(s) | 243, 863, 936, 1233 |
| BpmI | CTGGAG | 1 cut(s) | 546 |
| Bpu14I | TTCGAA | 1 cut(s) | 1316 |
| BpuEI | CTTGAG | 3 cut(s) | 156, 489, 1187 |
| BsaAI | YACGTR | 1 cut(s) | 337 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1556 |
| BsaJI | CCNNGG | 5 cut(s) | 322, 821, 953, 1133, 1400 |
| BsaWI | WCCGGW | 4 cut(s) | 37, 427, 526, 742 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 1571 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 148, 323, 822, 882, 883 |
| Bse1I | ACTGG | 2 cut(s) | 552, 1051 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1556 |
| BseAI | TCCGGA | 1 cut(s) | 37 |
| BseDI | CCNNGG | 5 cut(s) | 322, 821, 953, 1133, 1400 |
| BseGI | GGATG | 5 cut(s) | 18, 945, 1223, 1357, 1466 |
| BseJI | GATNNNNATC | 1 cut(s) | 1556 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 148, 323, 822, 882, 883 |
| BseMII | CTCAG | 8 cut(s) | 51, 199, 206, 342, 596, 783, 1137, 1425 |
| BseNI | ACTGG | 2 cut(s) | 552, 1051 |
| BseRI | GAGGAG | 5 cut(s) | 159, 513, 810, 1310, 1399 |
| BseSI | GKGCMC | 1 cut(s) | 1432 |
| BseXI | GCAGC | 2 cut(s) | 139, 1235 |
| BseYI | CCCAGC | 2 cut(s) | 833, 1102 |
| BsgI | GTGCAG | 1 cut(s) | 1242 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1238 |
| BshFI | GGCC | 2 cut(s) | 320, 1049 |
| BsiEI | CGRYCG | 1 cut(s) | 1238 |
| BsiHKAI | GWGCWC | 3 cut(s) | 519, 1432, 1584 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1583 |
| BsiSI | CCGG | 5 cut(s) | 38, 317, 428, 527, 743 |
| BsiWI | CGTACG | 1 cut(s) | 934 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 148, 323, 822, 882, 883 |
| BsmAI | GTCTC | 2 cut(s) | 542, 1184 |
| BsmBI | CGTCTC | 1 cut(s) | 542 |
| BsmI | GAATGC | 2 cut(s) | 499, 1323 |
| BsnI | GGCC | 2 cut(s) | 320, 1049 |
| BsoBI | CYCGRG | 1 cut(s) | 1583 |
| Bsp119I | TTCGAA | 1 cut(s) | 1316 |
| Bsp1286I | GDGCHC | 4 cut(s) | 180, 519, 1432, 1584 |
| Bsp13I | TCCGGA | 1 cut(s) | 37 |
| Bsp1407I | TGTACA | 1 cut(s) | 704 |
| Bsp143I | GATC | 6 cut(s) | 289, 304, 1015, 1235, 1331, 1551 |
| Bsp19I | CCATGG | 1 cut(s) | 322 |
| BspACI | CCGC | 2 cut(s) | 88, 597 |
| BspANI | GGCC | 2 cut(s) | 320, 1049 |
| BspCNI | CTCAG | 8 cut(s) | 52, 198, 207, 343, 597, 784, 1136, 1424 |
| BspEI | TCCGGA | 1 cut(s) | 37 |
| BspLI | GGNNCC | 3 cut(s) | 156, 432, 741 |
| BspMI | ACCTGC | 1 cut(s) | 442 |
| BspPI | GGATC | 1 cut(s) | 1023 |
| BspQI | GCTCTTC | 1 cut(s) | 553 |
| BspT104I | TTCGAA | 1 cut(s) | 1316 |
| BsrGI | TGTACA | 1 cut(s) | 704 |
| BsrI | ACTGG | 2 cut(s) | 552, 1051 |
| BssECI | CCNNGG | 5 cut(s) | 322, 821, 953, 1133, 1400 |
| BssMI | GATC | 6 cut(s) | 289, 304, 1015, 1235, 1331, 1551 |
| BssSI | CACGAG | 1 cut(s) | 991 |
| BssT1I | CCWWGG | 4 cut(s) | 322, 953, 1133, 1400 |
| Bst2BI | CACGAG | 1 cut(s) | 991 |
| Bst4CI | ACNGT | 2 cut(s) | 574, 1022 |
| Bst6I | CTCTTC | 2 cut(s) | 553, 1524 |
| BstAUI | TGTACA | 1 cut(s) | 704 |
| BstBAI | YACGTR | 1 cut(s) | 337 |
| BstBI | TTCGAA | 1 cut(s) | 1316 |
| BstC8I | GCNNGC | 1 cut(s) | 1571 |
| BstDEI | CTNAG | 9 cut(s) | 60, 185, 215, 255, 351, 605, 792, 1123, 1411 |
| BstDSI | CCRYGG | 1 cut(s) | 322 |
| BstF5I | GGATG | 5 cut(s) | 18, 945, 1223, 1357, 1466 |
| BstKTI | GATC | 6 cut(s) | 292, 307, 1018, 1238, 1334, 1554 |
| BstMAI | GTCTC | 2 cut(s) | 542, 1184 |
| BstMBI | GATC | 6 cut(s) | 289, 304, 1015, 1235, 1331, 1551 |
| BstMCI | CGRYCG | 1 cut(s) | 1238 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1108, 1354, 1579 |
| BstNSI | RCATGY | 1 cut(s) | 705 |
| BstSLI | GKGCMC | 1 cut(s) | 1432 |
| BstSNI | TACGTA | 1 cut(s) | 337 |
| BstV1I | GCAGC | 2 cut(s) | 139, 1235 |
| BstV2I | GAAGAC | 4 cut(s) | 243, 863, 936, 1233 |
| BsuI | GTATCC | 1 cut(s) | 1462 |
| BsuRI | GGCC | 2 cut(s) | 320, 1049 |
| BtgI | CCRYGG | 1 cut(s) | 322 |
| BtsCI | GGATG | 5 cut(s) | 18, 945, 1223, 1357, 1466 |
| BtsI | GCAGTG | 1 cut(s) | 808 |
| BtsIMutI | CAGTG | 4 cut(s) | 559, 602, 808, 1014 |
| BveI | ACCTGC | 1 cut(s) | 442 |
| Cac8I | GCNNGC | 1 cut(s) | 1571 |
| Cfr13I | GGNCC | 2 cut(s) | 319, 1048 |
| Csp6I | GTAC | 8 cut(s) | 22, 76, 334, 338, 619, 705, 935, 974 |
| CviAII | CATG | 7 cut(s) | 148, 229, 238, 246, 287, 323, 702 |
| CviQI | GTAC | 8 cut(s) | 22, 76, 334, 338, 619, 705, 935, 974 |
| DdeI | CTNAG | 9 cut(s) | 60, 185, 215, 255, 351, 605, 792, 1123, 1411 |
| DpnI | GATC | 6 cut(s) | 291, 306, 1017, 1237, 1333, 1553 |
| DpnII | GATC | 6 cut(s) | 289, 304, 1015, 1235, 1331, 1551 |
| DraI | TTTAAA | 1 cut(s) | 1230 |
| DraIII | CACNNNGTG | 1 cut(s) | 1367 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 64 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 64 |
| Eam1104I | CTCTTC | 2 cut(s) | 553, 1524 |
| EarI | CTCTTC | 2 cut(s) | 553, 1524 |
| Ecl136II | GAGCTC | 2 cut(s) | 517, 1582 |
| Eco105I | TACGTA | 1 cut(s) | 337 |
| Eco130I | CCWWGG | 4 cut(s) | 322, 953, 1133, 1400 |
| Eco24I | GRGCYC | 3 cut(s) | 180, 519, 1584 |
| Eco53kI | GAGCTC | 2 cut(s) | 517, 1582 |
| Eco57I | CTGAAG | 3 cut(s) | 318, 687, 1559 |
| Eco88I | CYCGRG | 1 cut(s) | 1583 |
| EcoICRI | GAGCTC | 2 cut(s) | 517, 1582 |
| EcoRI | GAATTC | 2 cut(s) | 370, 583 |
| EcoT14I | CCWWGG | 4 cut(s) | 322, 953, 1133, 1400 |
| EcoT22I | ATGCAT | 1 cut(s) | 1325 |
| EcoT38I | GRGCYC | 3 cut(s) | 180, 519, 1584 |
| ErhI | CCWWGG | 4 cut(s) | 322, 953, 1133, 1400 |
| Esp3I | CGTCTC | 1 cut(s) | 542 |
| FaeI | CATG | 7 cut(s) | 151, 232, 241, 249, 290, 326, 705 |
| FatI | CATG | 7 cut(s) | 147, 228, 237, 245, 286, 322, 701 |
| FbaI | TGATCA | 1 cut(s) | 1551 |
| FblI | GTMKAC | 2 cut(s) | 569, 1301 |
| Fnu4HI | GCNGC | 2 cut(s) | 128, 1224 |
| FokI | GGATG | 5 cut(s) | 25, 952, 1230, 1344, 1473 |
| FriOI | GRGCYC | 3 cut(s) | 180, 519, 1584 |
| Fsp4HI | GCNGC | 2 cut(s) | 128, 1224 |
| FspBI | CTAG | 1 cut(s) | 444 |
| GluI | GCNGC | 2 cut(s) | 128, 1224 |
| GsaI | CCCAGC | 2 cut(s) | 837, 1106 |
| GsuI | CTGGAG | 1 cut(s) | 546 |
| HaeIII | GGCC | 2 cut(s) | 320, 1049 |
| HapII | CCGG | 5 cut(s) | 38, 317, 428, 527, 743 |
| Hin1II | CATG | 7 cut(s) | 151, 232, 241, 249, 290, 326, 705 |
| HindIII | AAGCTT | 2 cut(s) | 1341, 1567 |
| HpaII | CCGG | 5 cut(s) | 38, 317, 428, 527, 743 |
| HphI | GGTGA | 1 cut(s) | 1561 |
| Hpy166II | GTNNAC | 8 cut(s) | 57, 106, 570, 602, 628, 899, 1302, 1430 |
| Hpy188III | TCNNGA | 9 cut(s) | 38, 117, 409, 444, 506, 539, 563, 1308, 1577 |
| Hpy8I | GTNNAC | 8 cut(s) | 57, 106, 570, 602, 628, 899, 1302, 1430 |
| Hpy99I | CGWCG | 1 cut(s) | 472 |
| HpyAV | CCTTC | 9 cut(s) | 481, 536, 917, 1006, 1264, 1494, 1528, 1534, 1540 |
| HpyCH4III | ACNGT | 2 cut(s) | 574, 1022 |
| HpyCH4IV | ACGT | 4 cut(s) | 336, 535, 933, 1312 |
| HpyCH4V | TGCA | 9 cut(s) | 437, 557, 750, 801, 943, 982, 1223, 1323, 1430 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1108, 1354, 1579 |
| HpyF3I | CTNAG | 9 cut(s) | 60, 185, 215, 255, 351, 605, 792, 1123, 1411 |
| HpySE526I | ACGT | 4 cut(s) | 336, 535, 933, 1312 |
| Hsp92II | CATG | 7 cut(s) | 151, 232, 241, 249, 290, 326, 705 |
| Kpn2I | TCCGGA | 1 cut(s) | 37 |
| Ksp22I | TGATCA | 1 cut(s) | 1551 |
| Kzo9I | GATC | 6 cut(s) | 289, 304, 1015, 1235, 1331, 1551 |
| LguI | GCTCTTC | 1 cut(s) | 553 |
| LmnI | GCTCC | 3 cut(s) | 1079, 1179, 1579 |
| Lsp1109I | GCAGC | 2 cut(s) | 139, 1235 |
| LweI | GCATC | 6 cut(s) | 446, 566, 640, 701, 930, 1366 |
| MaeI | CTAG | 1 cut(s) | 444 |
| MaeII | ACGT | 4 cut(s) | 336, 535, 933, 1312 |
| MaeIII | GTNAC | 1 cut(s) | 160 |
| MalI | GATC | 6 cut(s) | 291, 306, 1017, 1237, 1333, 1553 |
| MboI | GATC | 6 cut(s) | 289, 304, 1015, 1235, 1331, 1551 |
| MhlI | GDGCHC | 4 cut(s) | 180, 519, 1432, 1584 |
| MluCI | AATT | 4 cut(s) | 370, 422, 583, 1066 |
| MlyI | GAGTC | 3 cut(s) | 43, 575, 1307 |
| MmeI | TCCRAC | 3 cut(s) | 556, 717, 1061 |
| Mph1103I | ATGCAT | 1 cut(s) | 1325 |
| MroI | TCCGGA | 1 cut(s) | 37 |
| MroXI | GAANNNNTTC | 1 cut(s) | 583 |
| MseI | TTAA | 5 cut(s) | 198, 207, 960, 1229, 1494 |
| MslI | CAYNNNNRTG | 1 cut(s) | 327 |
| MspI | CCGG | 5 cut(s) | 38, 317, 428, 527, 743 |
| Mva1269I | GAATGC | 2 cut(s) | 499, 1323 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1108, 1354, 1579 |
| NcoI | CCATGG | 1 cut(s) | 322 |
| NdeII | GATC | 6 cut(s) | 289, 304, 1015, 1235, 1331, 1551 |
| NlaIII | CATG | 7 cut(s) | 151, 232, 241, 249, 290, 326, 705 |
| NlaIV | GGNNCC | 3 cut(s) | 156, 432, 741 |
| NsiI | ATGCAT | 1 cut(s) | 1325 |
| NspI | RCATGY | 1 cut(s) | 705 |
| NspV | TTCGAA | 1 cut(s) | 1316 |
| PciI | ACATGT | 1 cut(s) | 701 |
| PciSI | GCTCTTC | 1 cut(s) | 553 |
| PctI | GAATGC | 2 cut(s) | 499, 1323 |
| PdmI | GAANNNNTTC | 1 cut(s) | 583 |
| Pfl23II | CGTACG | 1 cut(s) | 934 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 148 |
| PkrI | GCNGC | 2 cut(s) | 129, 1225 |
| Ple19I | CGATCG | 1 cut(s) | 1238 |
| PleI | GAGTC | 3 cut(s) | 42, 574, 1306 |
| PpsI | GAGTC | 3 cut(s) | 42, 574, 1306 |
| Ppu21I | YACGTR | 1 cut(s) | 337 |
| PscI | ACATGT | 1 cut(s) | 701 |
| PshBI | ATTAAT | 1 cut(s) | 198 |
| PsiI | TTATAA | 1 cut(s) | 1591 |
| Psp124BI | GAGCTC | 2 cut(s) | 519, 1584 |
| PspFI | CCCAGC | 2 cut(s) | 833, 1102 |
| PspLI | CGTACG | 1 cut(s) | 934 |
| PspN4I | GGNNCC | 3 cut(s) | 156, 432, 741 |
| PspPI | GGNCC | 2 cut(s) | 319, 1048 |
| PvuI | CGATCG | 1 cut(s) | 1238 |
| RsaI | GTAC | 8 cut(s) | 23, 77, 335, 339, 620, 706, 936, 975 |
| RsaNI | GTAC | 8 cut(s) | 22, 76, 334, 338, 619, 705, 935, 974 |
| RseI | CAYNNNNRTG | 1 cut(s) | 327 |
| SacI | GAGCTC | 2 cut(s) | 519, 1584 |
| SapI | GCTCTTC | 1 cut(s) | 553 |
| SaqAI | TTAA | 5 cut(s) | 198, 207, 960, 1229, 1494 |
| SatI | GCNGC | 2 cut(s) | 128, 1224 |
| Sau3AI | GATC | 6 cut(s) | 289, 304, 1015, 1235, 1331, 1551 |
| Sau96I | GGNCC | 2 cut(s) | 319, 1048 |
| SchI | GAGTC | 3 cut(s) | 43, 575, 1307 |
| SduI | GDGCHC | 4 cut(s) | 180, 519, 1432, 1584 |
| SfaNI | GCATC | 6 cut(s) | 446, 566, 640, 701, 930, 1366 |
| SfuI | TTCGAA | 1 cut(s) | 1316 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 327 |
| SmlI | CTYRAG | 3 cut(s) | 171, 504, 1202 |
| SmoI | CTYRAG | 3 cut(s) | 171, 504, 1202 |
| SnaBI | TACGTA | 1 cut(s) | 337 |
| Sse9I | AATT | 4 cut(s) | 370, 422, 583, 1066 |
| SsiI | CCGC | 2 cut(s) | 88, 597 |
| SspI | AATATT | 1 cut(s) | 1169 |
| SspMI | CTAG | 1 cut(s) | 444 |
| SstI | GAGCTC | 2 cut(s) | 519, 1584 |
| StyI | CCWWGG | 4 cut(s) | 322, 953, 1133, 1400 |
| TaaI | ACNGT | 2 cut(s) | 574, 1022 |
| TaiI | ACGT | 4 cut(s) | 339, 538, 936, 1315 |
| TaqI | TCGA | 7 cut(s) | 118, 368, 540, 766, 1316, 1505, 1560 |
| TasI | AATT | 4 cut(s) | 370, 422, 583, 1066 |
| TatI | WGTACW | 4 cut(s) | 21, 618, 704, 973 |
| Tru1I | TTAA | 5 cut(s) | 198, 207, 960, 1229, 1494 |
| Tru9I | TTAA | 5 cut(s) | 198, 207, 960, 1229, 1494 |
| TscAI | CASTG | 4 cut(s) | 559, 609, 808, 1014 |
| TseI | GCWGC | 2 cut(s) | 127, 1223 |
| TspDTI | ATGAA | 7 cut(s) | 29, 136, 234, 453, 834, 1233, 1476 |
| TspGWI | ACGGA | 1 cut(s) | 952 |
| TspRI | CASTG | 4 cut(s) | 559, 609, 808, 1014 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 148 |
| VneI | GTGCAC | 1 cut(s) | 1428 |
| VspI | ATTAAT | 1 cut(s) | 198 |
| XapI | RAATTY | 2 cut(s) | 370, 583 |
| XbaI | TCTAGA | 1 cut(s) | 443 |
| XceI | RCATGY | 1 cut(s) | 705 |
| XmiI | GTMKAC | 2 cut(s) | 569, 1301 |
| XmnI | GAANNNNTTC | 1 cut(s) | 583 |
| XspI | CTAG | 1 cut(s) | 444 |
| Zsp2I | ATGCAT | 1 cut(s) | 1325 |