FvH4_3g37931

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006436
Physical Location & Seq
Forward (+)
32485442 .. 32486409
968 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37931.t2

Sequence Viewer

Length: 564 bp
ATGACATACCAGGACCTAGCCACCAAGGAGCAGATTGGTGAAGGGTTTTATCTTAATGGTCTGTACTACCTCTCAAAGGATTTTAGAGTTCCAGAAGTCACCCAAGCTCATCTTAGTCTAGCTCAAGAGCATCAGCTATGGCATCAACGTCTAGCACATCCTTCAGACCATGTTTTATCTTCTGTTTTTCCAAATCTGTGTAAAGAATCTCTTCAATGTGAAATTTGTCATTTAGCTAAGTCTACTAGACTCCCTTTTGGCTCATCTGTATCTCGAGCTAGCAAGCCTTTTGACATTGTACACTCTGATATCTGGGGACCAGCTCCTCTAGATTCATTTGATGGTTATAAGTACTTTGTTACTTTTATTGATGATTTCTCTCGAGTCACTTGGTTATATCTTGTAAAGCTTAAGAGTGATCTTGTGTCTATTTTCAAAGATTTTTATAATCCGGTCACAAACATGTTTTCTGCTAAACTTCAAATTCTCAGATCAGATAATGGTGCCGAATATATGTCCAAAATCATGTCACAATTCCTAAGCTCAAATGGAATCCTACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

188

Amino Acids

21.45

Weight (kDa)

6.43

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
gag_pre-integrs PF13976 40 - 101 2.9e-09 GAG-pre-integrase domain
rve PF00665 114 - 207 1.1e-10 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 348, 447
AccB1I GGYRCC 1 cut(s) 503
AccI GTMKAC 1 cut(s) 242
AcsI RAATTY 2 cut(s) 222, 483
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 3 cut(s) 65, 300, 353
AfiI CCNNNNNNNGG 1 cut(s) 76
AflII CTTAAG 1 cut(s) 410
AflIII ACRYGT 1 cut(s) 462
AgsI TTSAA 3 cut(s) 215, 436, 482
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 8 cut(s) 107, 122, 136, 236, 278, 323, 409, 543
AluI AGCT 8 cut(s) 107, 122, 136, 236, 278, 323, 409, 543
Ama87I CYCGRG 2 cut(s) 273, 381
ApoI RAATTY 2 cut(s) 222, 483
Asp700I GAANNNNTTC 1 cut(s) 210
AspS9I GGNCC 2 cut(s) 13, 317
AsuHPI GGTGA 2 cut(s) 50, 91
AsuNHI GCTAGC 1 cut(s) 278
AvaI CYCGRG 2 cut(s) 273, 381
AvaII GGWCC 2 cut(s) 13, 317
BanI GGYRCC 1 cut(s) 503
BccI CCATC 1 cut(s) 335
BciT130I CCWGG 1 cut(s) 11
BfaI CTAG 6 cut(s) 17, 119, 152, 246, 279, 329
BfrI CTTAAG 1 cut(s) 410
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 2 cut(s) 13, 317
BmeT110I CYCGRG 2 cut(s) 273, 381
BmgT120I GGNCC 2 cut(s) 13, 317
BmiI GGNNCC 2 cut(s) 318, 505
BmrFI CCNGG 1 cut(s) 11
BmsI GCATC 2 cut(s) 139, 151
BmtI GCTAGC 1 cut(s) 282
Bpu10I CCTNAGC 1 cut(s) 539
BpuEI CTTGAG 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 24
BsaWI WCCGGW 1 cut(s) 451
Bsc4I CCNNNNNNNGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 502
BseRI GAGGAG 1 cut(s) 315
BshNI GGYRCC 1 cut(s) 503
BsiHKCI CYCGRG 2 cut(s) 273, 381
BsiSI CCGG 1 cut(s) 452
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 330
BsoBI CYCGRG 2 cut(s) 273, 381
Bsp1407I TGTACA 1 cut(s) 298
Bsp143I GATC 2 cut(s) 418, 491
BspCNI CTCAG 1 cut(s) 501
BspLI GGNNCC 2 cut(s) 318, 505
BspOI GCTAGC 1 cut(s) 282
BspT107I GGYRCC 1 cut(s) 503
BspTI CTTAAG 1 cut(s) 410
BsrGI TGTACA 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 2 cut(s) 418, 491
BssT1I CCWWGG 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 216
BstAFI CTTAAG 1 cut(s) 410
BstAUI TGTACA 1 cut(s) 298
BstC8I GCNNGC 2 cut(s) 280, 284
BstDEI CTNAG 4 cut(s) 113, 237, 488, 539
BstENI CCTNNNNNAGG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 2 cut(s) 421, 494
BstMBI GATC 2 cut(s) 418, 491
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 466
BstSCI CCNGG 1 cut(s) 9
BtsCI GGATG 1 cut(s) 157
Cac8I GCNNGC 2 cut(s) 280, 284
Cfr13I GGNCC 2 cut(s) 13, 317
Csp6I GTAC 3 cut(s) 64, 299, 352
CviAII CATG 3 cut(s) 170, 463, 526
CviQI GTAC 3 cut(s) 64, 299, 352
DdeI CTNAG 4 cut(s) 113, 237, 488, 539
DpnI GATC 2 cut(s) 420, 493
DpnII GATC 2 cut(s) 418, 491
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 24
Eco32I GATATC 1 cut(s) 310
Eco47I GGWCC 2 cut(s) 13, 317
Eco57I CTGAAG 1 cut(s) 147
Eco88I CYCGRG 2 cut(s) 273, 381
EcoNI CCTNNNNNAGG 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 9
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 3 cut(s) 173, 466, 529
FalI AAGNNNNNCTT 4 cut(s) 96, 128, 195, 227
FaqI GGGAC 1 cut(s) 330
FatI CATG 3 cut(s) 169, 462, 525
FblI GTMKAC 1 cut(s) 242
FokI GGATG 1 cut(s) 144
FspBI CTAG 6 cut(s) 17, 119, 152, 246, 279, 329
HapII CCGG 1 cut(s) 452
Hin1II CATG 3 cut(s) 173, 466, 529
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 5 cut(s) 206, 249, 332, 384, 552
HpaII CCGG 1 cut(s) 452
HphI GGTGA 2 cut(s) 50, 91
Hpy166II GTNNAC 2 cut(s) 243, 301
Hpy188I TCNGA 4 cut(s) 166, 307, 491, 496
Hpy188III TCNNGA 5 cut(s) 92, 125, 273, 329, 381
Hpy8I GTNNAC 2 cut(s) 243, 301
HpyAV CCTTC 2 cut(s) 35, 171
HpyCH4IV ACGT 1 cut(s) 148
HpyF3I CTNAG 4 cut(s) 113, 237, 488, 539
HpySE526I ACGT 1 cut(s) 148
Hsp92II CATG 3 cut(s) 173, 466, 529
Kzo9I GATC 2 cut(s) 418, 491
LmnI GCTCC 2 cut(s) 28, 328
LpnPI CCDG 5 cut(s) 23, 105, 298, 333, 465
LweI GCATC 2 cut(s) 139, 151
MaeI CTAG 6 cut(s) 17, 119, 152, 246, 279, 329
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 5 cut(s) 97, 358, 385, 454, 528
MalI GATC 2 cut(s) 420, 493
MboI GATC 2 cut(s) 418, 491
MboII GAAGA 2 cut(s) 171, 203
MluCI AATT 3 cut(s) 222, 483, 533
MlyI GAGTC 2 cut(s) 243, 393
MnlI CCTC 2 cut(s) 80, 336
MroXI GAANNNNTTC 1 cut(s) 210
MseI TTAA 2 cut(s) 54, 411
MslI CAYNNNNRTG 1 cut(s) 461
MspCI CTTAAG 1 cut(s) 410
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
NdeII GATC 2 cut(s) 418, 491
NheI GCTAGC 1 cut(s) 278
NlaIII CATG 3 cut(s) 173, 466, 529
NlaIV GGNNCC 2 cut(s) 318, 505
NmuCI GTSAC 4 cut(s) 97, 385, 454, 528
NspI RCATGY 1 cut(s) 466
PaeR7I CTCGAG 2 cut(s) 273, 381
PciI ACATGT 1 cut(s) 462
PdmI GAANNNNTTC 1 cut(s) 210
PfeI GAWTC 3 cut(s) 206, 332, 552
PleI GAGTC 2 cut(s) 243, 392
PpsI GAGTC 2 cut(s) 243, 392
PpuMI RGGWCCY 1 cut(s) 13
PscI ACATGT 1 cut(s) 462
PsiI TTATAA 2 cut(s) 348, 447
Psp5II RGGWCCY 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 2 cut(s) 318, 505
PspPI GGNCC 2 cut(s) 13, 317
PspPPI RGGWCCY 1 cut(s) 13
RsaI GTAC 3 cut(s) 65, 300, 353
RsaNI GTAC 3 cut(s) 64, 299, 352
RseI CAYNNNNRTG 1 cut(s) 461
SaqAI TTAA 2 cut(s) 54, 411
Sau3AI GATC 2 cut(s) 418, 491
Sau96I GGNCC 2 cut(s) 13, 317
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 2 cut(s) 243, 393
ScrFI CCNGG 1 cut(s) 11
SfaNI GCATC 2 cut(s) 139, 151
Sfr274I CTCGAG 2 cut(s) 273, 381
SinI GGWCC 2 cut(s) 13, 317
SlaI CTCGAG 2 cut(s) 273, 381
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 4 cut(s) 123, 273, 381, 410
SmoI CTYRAG 4 cut(s) 123, 273, 381, 410
Sse9I AATT 3 cut(s) 222, 483, 533
SspMI CTAG 6 cut(s) 17, 119, 152, 246, 279, 329
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 24
TaiI ACGT 1 cut(s) 151
TaqI TCGA 2 cut(s) 274, 382
TasI AATT 3 cut(s) 222, 483, 533
TatI WGTACW 3 cut(s) 63, 298, 351
TfiI GAWTC 3 cut(s) 206, 332, 552
Tru1I TTAA 2 cut(s) 54, 411
Tru9I TTAA 2 cut(s) 54, 411
TseFI GTSAC 4 cut(s) 97, 385, 454, 528
Tsp45I GTSAC 4 cut(s) 97, 385, 454, 528
TspDTI ATGAA 1 cut(s) 324
Vha464I CTTAAG 1 cut(s) 410
VpaK11BI GGWCC 2 cut(s) 13, 317
XagI CCTNNNNNAGG 1 cut(s) 74
XapI RAATTY 2 cut(s) 222, 483
XbaI TCTAGA 1 cut(s) 328
XceI RCATGY 1 cut(s) 466
XhoI CTCGAG 2 cut(s) 273, 381
XmiI GTMKAC 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 210
XspI CTAG 6 cut(s) 17, 119, 152, 246, 279, 329
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.